View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15594_high_3 (Length: 425)
Name: NF15594_high_3
Description: NF15594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15594_high_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 19 - 425
Target Start/End: Original strand, 35872695 - 35873101
Alignment:
| Q |
19 |
caaggttcaccacctttcttcaatattactctctcatagtactttgatatcaattctgtgtacctgttaggatttagatgatatacttatccctatgtat |
118 |
Q |
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| T |
35872695 |
caaggttcaccacctttcttcaatattactctctcatagtactttgatatcaattctgtgtacctgttaggatttagatgatatacttatccctatgtat |
35872794 |
T |
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| Q |
119 |
cnnnnnnnnnnnnagttgcgatttgtgattttcagttaattactatcaatctgaccttttcatgctcattacaggaagttcaagaggctgtccacaattg |
218 |
Q |
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| T |
35872795 |
ctttttgttttttagttgcgatttgtgattttcagttaattactatcaatctgaccttttcatgctcattacaggaagttcaagaggctgtccacaatcg |
35872894 |
T |
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| Q |
219 |
agttgtcggactttggctgttttataattgtggcttgtggaatcaccgttttgcagcaaataggtatagttataatctgcttccattgtcgtatcttaca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35872895 |
agttgtcggactttggctgttttataattgtggcttgtggaatcaccgttttgcagcaaataggtatagttataatctgcttccattgtcgtatcttaca |
35872994 |
T |
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| Q |
319 |
catttcctttttgtggtgatcaggttctgtttctttatactgaaatttgtgttatgctcagcactcgtaattttatcgttgttttagatatcagcttaat |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35872995 |
catttcctttttgtggtgatcaggttctgtttctttatactgaaatttgtgttatgctcagcactcgtaattttatcgttgttttagatatcagcttaat |
35873094 |
T |
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| Q |
419 |
atatcac |
425 |
Q |
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| T |
35873095 |
atatcac |
35873101 |
T |
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