View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15594_high_7 (Length: 241)

Name: NF15594_high_7
Description: NF15594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15594_high_7
NF15594_high_7
[»] chr4 (31 HSPs)
chr4 (7-227)||(11601579-11601799)
chr4 (7-115)||(41761741-41761849)
chr4 (8-132)||(51011929-51012054)
chr4 (14-114)||(49523146-49523246)
chr4 (8-116)||(41781559-41781667)
chr4 (7-115)||(48646742-48646850)
chr4 (8-115)||(35404441-35404548)
chr4 (28-115)||(52868165-52868252)
chr4 (8-115)||(48813808-48813915)
chr4 (10-135)||(2693251-2693376)
chr4 (59-115)||(48645276-48645332)
chr4 (46-116)||(2691393-2691463)
chr4 (8-93)||(42980678-42980763)
chr4 (30-115)||(43519445-43519530)
chr4 (14-93)||(2350509-2350588)
chr4 (47-140)||(49524733-49524827)
chr4 (46-115)||(20820006-20820075)
chr4 (20-93)||(44794768-44794841)
chr4 (47-115)||(39345585-39345653)
chr4 (14-93)||(35996106-35996185)
chr4 (14-115)||(7149560-7149661)
chr4 (20-93)||(47941854-47941927)
chr4 (59-115)||(35401770-35401826)
chr4 (67-115)||(42982472-42982520)
chr4 (65-115)||(319294-319344)
chr4 (47-132)||(33266010-33266096)
chr4 (20-93)||(10372714-10372787)
chr4 (47-115)||(4173740-4173808)
chr4 (47-115)||(43507188-43507256)
chr4 (47-115)||(43508653-43508721)
chr4 (29-93)||(44558510-44558574)
[»] chr8 (34 HSPs)
chr8 (8-116)||(26242330-26242438)
chr8 (8-116)||(8609803-8609911)
chr8 (8-115)||(41825660-41825767)
chr8 (8-115)||(13282499-13282606)
chr8 (8-115)||(13486115-13486222)
chr8 (14-115)||(42941795-42941896)
chr8 (7-115)||(13108351-13108459)
chr8 (20-104)||(22272368-22272452)
chr8 (20-132)||(7745140-7745253)
chr8 (7-115)||(9673180-9673288)
chr8 (8-115)||(41042600-41042707)
chr8 (20-137)||(38547226-38547344)
chr8 (14-111)||(5036470-5036567)
chr8 (30-115)||(27691175-27691260)
chr8 (59-115)||(26238747-26238803)
chr8 (59-111)||(43262149-43262201)
chr8 (59-115)||(34681078-34681134)
chr8 (59-115)||(41823911-41823967)
chr8 (47-115)||(42943426-42943494)
chr8 (47-120)||(5038062-5038135)
chr8 (47-140)||(33761064-33761158)
chr8 (59-135)||(9671977-9672054)
chr8 (14-115)||(15305818-15305919)
chr8 (14-115)||(15486187-15486288)
chr8 (20-93)||(31201151-31201224)
chr8 (30-115)||(33708842-33708926)
chr8 (47-115)||(35509235-35509303)
chr8 (21-72)||(40339709-40339760)
chr8 (68-114)||(13484567-13484613)
chr8 (47-115)||(8608258-8608327)
chr8 (47-115)||(22273891-22273959)
chr8 (47-115)||(29239187-29239255)
chr8 (14-90)||(31821464-31821540)
chr8 (47-115)||(38548831-38548899)
[»] chr7 (40 HSPs)
chr7 (8-115)||(37796177-37796284)
chr7 (8-114)||(37115522-37115628)
chr7 (8-116)||(24228405-24228513)
chr7 (8-115)||(6602356-6602463)
chr7 (8-115)||(39859225-39859332)
chr7 (28-111)||(47386225-47386308)
chr7 (20-113)||(45359359-45359452)
chr7 (8-112)||(38474139-38474243)
chr7 (46-128)||(13039641-13039724)
chr7 (14-93)||(34776917-34776996)
chr7 (8-116)||(30940421-30940529)
chr7 (8-114)||(13168142-13168251)
chr7 (20-115)||(29996522-29996617)
chr7 (31-115)||(56351-56435)
chr7 (14-115)||(13018054-13018157)
chr7 (30-115)||(27666083-27666168)
chr7 (8-81)||(48852343-48852416)
chr7 (47-115)||(13169683-13169751)
chr7 (59-115)||(39857666-39857722)
chr7 (60-115)||(35691448-35691503)
chr7 (14-115)||(20478063-20478164)
chr7 (20-93)||(35693378-35693453)
chr7 (59-115)||(38549568-38549624)
chr7 (14-93)||(33038799-33038878)
chr7 (47-132)||(35401972-35402058)
chr7 (20-93)||(35344298-35344371)
chr7 (47-139)||(48227941-48228034)
chr7 (47-115)||(6605397-6605465)
chr7 (59-115)||(37113962-37114018)
chr7 (46-133)||(37791656-37791744)
chr7 (14-90)||(46996704-46996780)
chr7 (63-115)||(48311749-48311801)
chr7 (60-115)||(24226602-24226657)
chr7 (60-115)||(46437128-46437183)
chr7 (47-132)||(22155847-22155933)
chr7 (47-132)||(22211762-22211848)
chr7 (30-100)||(27955406-27955476)
chr7 (20-93)||(8423289-8423362)
chr7 (47-115)||(35403619-35403687)
chr7 (63-115)||(47384315-47384367)
[»] chr1 (31 HSPs)
chr1 (8-115)||(2869600-2869707)
chr1 (8-111)||(51896148-51896251)
chr1 (8-132)||(50556093-50556218)
chr1 (8-115)||(31238491-31238598)
chr1 (8-115)||(37344363-37344470)
chr1 (34-139)||(25278975-25279081)
chr1 (8-115)||(25278364-25278471)
chr1 (8-115)||(4855962-4856069)
chr1 (8-115)||(3013466-3013579)
chr1 (8-93)||(15104484-15104569)
chr1 (8-139)||(6818674-6818806)
chr1 (28-111)||(27087308-27087391)
chr1 (8-115)||(34778134-34778241)
chr1 (14-115)||(33602646-33602747)
chr1 (14-115)||(46583558-46583659)
chr1 (45-111)||(52643648-52643714)
chr1 (14-115)||(9121670-9121771)
chr1 (47-111)||(3011880-3011944)
chr1 (59-115)||(25278875-25278931)
chr1 (59-115)||(52641909-52641965)
chr1 (47-132)||(2871076-2871162)
chr1 (14-115)||(47013084-47013185)
chr1 (59-115)||(31236840-31236896)
chr1 (47-115)||(33599239-33599307)
chr1 (20-93)||(27940651-27940724)
chr1 (47-115)||(26223608-26223676)
chr1 (29-115)||(35479992-35480078)
chr1 (47-116)||(51894587-51894656)
chr1 (14-86)||(42134532-42134604)
chr1 (47-115)||(46582031-46582099)
chr1 (59-115)||(50554184-50554240)
[»] chr2 (31 HSPs)
chr2 (14-114)||(40560245-40560345)
chr2 (14-115)||(16763097-16763198)
chr2 (8-139)||(2766930-2767062)
chr2 (8-139)||(39664764-39664896)
chr2 (14-114)||(14389106-14389206)
chr2 (7-115)||(44709760-44709868)
chr2 (8-114)||(6797529-6797635)
chr2 (8-93)||(19908262-19908347)
chr2 (8-115)||(17696227-17696334)
chr2 (8-115)||(37645508-37645615)
chr2 (28-115)||(39455190-39455277)
chr2 (8-93)||(16377213-16377298)
chr2 (46-136)||(31475079-31475170)
chr2 (46-116)||(37646477-37646547)
chr2 (20-78)||(42519233-42519291)
chr2 (59-120)||(162087-162148)
chr2 (14-115)||(24208064-24208165)
chr2 (59-115)||(19906703-19906759)
chr2 (47-132)||(39663157-39663243)
chr2 (14-115)||(6786003-6786104)
chr2 (29-93)||(15432371-15432435)
chr2 (47-114)||(16376758-16376825)
chr2 (14-115)||(37020529-37020630)
chr2 (59-111)||(19581439-19581491)
chr2 (47-115)||(39456780-39456848)
chr2 (60-115)||(34400335-34400390)
chr2 (20-93)||(15372542-15372615)
chr2 (14-87)||(29909662-29909735)
chr2 (20-93)||(41706582-41706655)
chr2 (47-116)||(42003492-42003561)
chr2 (29-93)||(37417316-37417380)
[»] chr6 (26 HSPs)
chr6 (14-114)||(32439093-32439193)
chr6 (8-115)||(10568420-10568527)
chr6 (14-112)||(20523390-20523488)
chr6 (8-115)||(6899506-6899613)
chr6 (14-115)||(13613584-13613685)
chr6 (8-114)||(7372954-7373060)
chr6 (8-115)||(11355243-11355350)
chr6 (20-115)||(14338483-14338578)
chr6 (8-115)||(32516898-32517005)
chr6 (14-115)||(32455893-32455994)
chr6 (59-115)||(6902910-6902965)
chr6 (14-80)||(9398716-9398782)
chr6 (14-115)||(3456769-3456870)
chr6 (59-115)||(33276822-33276878)
chr6 (59-114)||(7051257-7051312)
chr6 (59-135)||(21068625-21068702)
chr6 (29-93)||(2968182-2968246)
chr6 (8-54)||(7049839-7049885)
chr6 (73-115)||(8605351-8605393)
chr6 (63-115)||(9400051-9400103)
chr6 (59-115)||(10569931-10569987)
chr6 (20-90)||(3018440-3018510)
chr6 (20-93)||(4641398-4641471)
chr6 (75-115)||(7049807-7049847)
chr6 (67-115)||(7371196-7371244)
chr6 (47-115)||(11357194-11357262)
[»] chr5 (31 HSPs)
chr5 (8-115)||(17574339-17574446)
chr5 (8-115)||(36057609-36057716)
chr5 (8-115)||(2179808-2179915)
chr5 (8-115)||(30468276-30468383)
chr5 (8-115)||(7267864-7267971)
chr5 (24-115)||(8539696-8539787)
chr5 (8-115)||(34327656-34327763)
chr5 (8-136)||(18625004-18625133)
chr5 (30-140)||(24541230-24541341)
chr5 (47-115)||(30463921-30463989)
chr5 (14-114)||(29621783-29621883)
chr5 (45-111)||(43492131-43492197)
chr5 (14-115)||(2854329-2854429)
chr5 (14-115)||(40780571-40780672)
chr5 (59-135)||(41493844-41493921)
chr5 (47-115)||(12738736-12738804)
chr5 (47-115)||(12801559-12801627)
chr5 (59-114)||(8541283-8541338)
chr5 (47-139)||(7269446-7269539)
chr5 (30-115)||(42473625-42473710)
chr5 (14-90)||(18728604-18728680)
chr5 (14-90)||(32087560-32087636)
chr5 (29-93)||(38178110-38178174)
chr5 (29-93)||(38205334-38205398)
chr5 (60-115)||(34328840-34328895)
chr5 (65-115)||(2852907-2852957)
chr5 (47-93)||(28813765-28813811)
chr5 (14-80)||(33256456-33256522)
chr5 (47-115)||(29620159-29620227)
chr5 (14-90)||(35395379-35395455)
chr5 (29-93)||(38596911-38596975)
[»] chr3 (45 HSPs)
chr3 (8-115)||(35905728-35905835)
chr3 (8-115)||(53190775-53190882)
chr3 (8-132)||(51684613-51684738)
chr3 (8-115)||(21348744-21348851)
chr3 (20-115)||(43765158-43765253)
chr3 (8-115)||(54898458-54898565)
chr3 (8-137)||(42279505-42279635)
chr3 (8-115)||(27899097-27899204)
chr3 (14-115)||(2226174-2226275)
chr3 (8-116)||(23293186-23293294)
chr3 (14-115)||(17515331-17515432)
chr3 (8-93)||(30599934-30600019)
chr3 (7-115)||(41977771-41977879)
chr3 (28-114)||(2377051-2377137)
chr3 (47-115)||(23291591-23291659)
chr3 (20-115)||(46112508-46112603)
chr3 (14-115)||(2660233-2660334)
chr3 (20-93)||(23774195-23774268)
chr3 (8-73)||(48830822-48830887)
chr3 (59-115)||(42282485-42282541)
chr3 (21-93)||(46197763-46197835)
chr3 (59-111)||(51686406-51686458)
chr3 (30-111)||(3152256-3152337)
chr3 (14-90)||(19987616-19987692)
chr3 (14-86)||(33852672-33852744)
chr3 (60-115)||(30598358-30598413)
chr3 (59-115)||(611234-611290)
chr3 (47-115)||(3150273-3150341)
chr3 (14-54)||(7884895-7884935)
chr3 (14-86)||(44794257-44794329)
chr3 (47-115)||(53187763-53187831)
chr3 (60-115)||(24846559-24846614)
chr3 (14-93)||(40508913-40508992)
chr3 (47-114)||(46310436-46310503)
chr3 (14-93)||(48633920-48633999)
chr3 (8-53)||(44276212-44276257)
chr3 (59-139)||(54412559-54412640)
chr3 (67-115)||(17516993-17517041)
chr3 (47-115)||(38193510-38193578)
chr3 (47-115)||(41979352-41979420)
chr3 (60-139)||(44267977-44268057)
chr3 (47-115)||(46308828-46308896)
chr3 (47-115)||(46611303-46611371)
chr3 (59-115)||(48829377-48829433)
chr3 (47-115)||(53094273-53094341)
[»] scaffold1454 (1 HSPs)
scaffold1454 (8-115)||(1284-1391)
[»] scaffold0058 (3 HSPs)
scaffold0058 (14-115)||(3315-3416)
scaffold0058 (14-115)||(4487-4588)
scaffold0058 (47-115)||(14343-14411)
[»] scaffold0002 (1 HSPs)
scaffold0002 (60-116)||(436285-436341)
[»] scaffold0564 (1 HSPs)
scaffold0564 (7-115)||(8283-8389)
[»] scaffold0477 (1 HSPs)
scaffold0477 (20-93)||(6642-6715)
[»] scaffold0345 (1 HSPs)
scaffold0345 (47-115)||(1555-1623)


Alignment Details
Target: chr4 (Bit Score: 154; Significance: 8e-82; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 11601799 - 11601579
Alignment:
Q  7 aagcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttga 106  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| || ||| || |||||| ||||||||| ||||  ||||| ||||||||||||    
T  11601799 aagcttgtggacagagggactattttgatggacgtctgtaaaattcagggactaa-tatatattttgcaaaatttggggataaatttgactgatttttga 11601701  T
Q  107 aaattcaaga-cgaactttagatattactcatttcgattgttgctaccattatactaatatttgatttcaattgagtttgctctattgtcactgtgttgc 205  Q
    |||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11601700 aaattcaagaacgaattttaggtattactcatttcgattgttgctaccattatactaatatttgatttcaattgagtttgctctactgtcactgtgttgc 11601601  T
Q  206 tgcggcttcgaaattagtcacc 227  Q
    ||||| ||||||||||||||||    
T  11601600 tgcggtttcgaaattagtcacc 11601579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 7 - 115
Target Start/End: Original strand, 41761741 - 41761849
Alignment:
Q  7 aagcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttga 106  Q
    |||||| ||||| ||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||  | |||||||||    
T  41761741 aagcttttggacggagggaccattttgatggacgtctgtaaaattcagggactaaatagatatttcgcaaaatttcgggacgaatttggccgatttttga 41761840  T
Q  107 aaattcaag 115  Q
    |||||||||    
T  41761841 aaattcaag 41761849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 8 - 132
Target Start/End: Complemental strand, 51012054 - 51011929
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||| ||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| | | | |||||| || ||||||| ||    
T  51012054 agcttttggacggagggaccattttgatggacgtctgtaaaattcagagactaaatagatatttcgcaaaattcaagaaagaatttgaccgattttttaa 51011955  T
Q  108 aattcaa-gacgaactttagatatta 132  Q
    ||||||| |||||| || ||||||||    
T  51011954 aattcaaggacgaatttgagatatta 51011929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 114
Target Start/End: Complemental strand, 49523246 - 49523146
Alignment:
Q  14 tggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattca 113  Q
    ||||| ||||||| ||||||||| ||||||||||||||||| || |||||||||||||||||||||| | ||||||||||| | ||||||| ||||||||    
T  49523246 tggacggagggaccattttgatgaacgtctgtaaaattcagggactaaatagatatttcgcaaaattcatggacgaatttagccgattttttaaaattca 49523147  T
Q  114 a 114  Q
    |    
T  49523146 a 49523146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 41781667 - 41781559
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||| ||||| ||||||| ||||||||||| ||||||||||||||| || |||||| |||||| |||||||| |||||| ||||| || ||||||| ||    
T  41781667 agcttttggacggagggaccattttgatggatgtctgtaaaattcagggactaaataaatattttgcaaaattcagggacaaatttgaccgattttttaa 41781568  T
Q  108 aattcaaga 116  Q
    |||||||||    
T  41781567 aattcaaga 41781559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 7 - 115
Target Start/End: Original strand, 48646742 - 48646850
Alignment:
Q  7 aagcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttga 106  Q
    |||||| ||||| || |||| ||||||||| | ||||||||||||||| || |||||||||||||||| ||||| | ||||||||||| |||| ||||||    
T  48646742 aagcttttggacggaaggaccattttgatgaaggtctgtaaaattcagggactaaatagatatttcgctaaattcaaggacgaatttagctgacttttga 48646841  T
Q  107 aaattcaag 115  Q
    |||||||||    
T  48646842 aaattcaag 48646850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 35404441 - 35404548
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||| ||||| || |||| |||||| |||||||||||||||||||| || |||||| ||||||||||||||| | ||||||||||| | ||||||| ||    
T  35404441 agcttttggacggatggaccattttgttggacgtctgtaaaattcagggattaaataaatatttcgcaaaattgaaggacgaatttagccgattttttaa 35404540  T
Q  108 aattcaag 115  Q
    ||||||||    
T  35404541 aattcaag 35404548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 28 - 115
Target Start/End: Original strand, 52868165 - 52868252
Alignment:
Q  28 attttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||| | ||||||| ||||||||||| ||||||||||||||||||||||||  ||||||||| || ||||||| ||||||||||    
T  52868165 attttgataggcgtctgttaaattcagagactaaatagatatttcgcaaaatttatagacgaatttgaccgattttttaaaattcaag 52868252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 48813915 - 48813808
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||| |||||  |||||| |||||||||||||||| ||||||||||  | |||||| |||||| |||||||| |||||  |||||  ||||||||||||    
T  48813915 agcttttggacgaagggaccattttgatggacgtctataaaattcaggaactaaatatatattttgcaaaattcagggataaatttggctgatttttgaa 48813816  T
Q  108 aattcaag 115  Q
    ||||||||    
T  48813815 aattcaag 48813808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 135
Target Start/End: Original strand, 2693251 - 2693376
Alignment:
Q  10 cttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaa 109  Q
    ||||||||| || |||| |||||||||||| | | ||||||||| ||| |||||||||||||||||||||||||| |  |||||  ||||||||| ||||    
T  2693251 cttatggacggatggaccattttgatggacattt-taaaattcaaagactaaatagatatttcgcaaaatttaggaataaatttggctgattttttaaaa 2693349  T
Q  110 ttc-aagacgaactttagatattactc 135  Q
    ||| |||||||| || || ||||||||    
T  2693350 ttcaaagacgaagttgaggtattactc 2693376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 48645332 - 48645276
Alignment:
Q  59 taaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||||||||||||||||| | |||||||||| |||||||||||||||||||||    
T  48645332 taaatagatatttcgcaaaattcatggacgaatttgactgatttttgaaaattcaag 48645276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 116
Target Start/End: Complemental strand, 2691463 - 2691393
Alignment:
Q  46 aaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaaga 116  Q
    ||||||||| || ||||||||||||| |||||||||  ||||||||||  |||||||||||||||||||||    
T  2691463 aaaattcagggactaaatagatattttgcaaaatttgtggacgaatttggctgatttttgaaaattcaaga 2691393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 42980763 - 42980678
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaattt 93  Q
    ||||| ||||| ||||||| |||||||||||||||||||||||| || || |||||||| |||||| |||||| | |||| |||||    
T  42980763 agcttttggacggagggaccattttgatggacgtctgtaaaattaagggactaaatagaaatttcgtaaaattcatggacaaattt 42980678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 115
Target Start/End: Complemental strand, 43519530 - 43519445
Alignment:
Q  30 tttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||||||| |||||||||||| || ||| | |||||||||||||||| ||||||||| ||  | ||||||| ||||||||||    
T  43519530 tttgatggacgtttgtaaaattcagggactaatttgatatttcgcaaaattcagggacgaaattggccgatttttcaaaattcaag 43519445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 93
Target Start/End: Original strand, 2350509 - 2350588
Alignment:
Q  14 tggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaattt 93  Q
    |||||||||||||  |||||||| |||||||  ||||||||||| ||||| ||||||||||| |||| |||||| |||||    
T  2350509 tggacagagggacctttttgatgaacgtctgataaattcagagattaaattgatatttcgcataattgagggacaaattt 2350588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 140
Target Start/End: Original strand, 49524733 - 49524827
Alignment:
Q  47 aaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaa-gacgaactttagatattactcatttc 140  Q
    |||||||| || ||||||| ||||| |||||||| |||||||||||| || ||||||| ||||||||| |||||| || || ||||| |||||||    
T  49524733 aaattcagggactaaatagctattttgcaaaattcagggacgaatttgaccgattttttaaaattcaaggacgaatttgaggtattagtcatttc 49524827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 115
Target Start/End: Complemental strand, 20820075 - 20820006
Alignment:
Q  46 aaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    ||||||||| || |||||| |||||| |||||||||||| |  ||||| |||||||||||||||||||||    
T  20820075 aaaattcagggactaaataaatattttgcaaaatttaggaataaatttgactgatttttgaaaattcaag 20820006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 44794768 - 44794841
Alignment:
Q  20 gagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaattt 93  Q
    |||||||  ||||||||||||||||  |||||||| || ||||| ||||||||||| |||| ||||||||||||    
T  44794768 gagggacctttttgatggacgtctgataaattcagggattaaattgatatttcgcataattgagggacgaattt 44794841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 39345653 - 39345585
Alignment:
Q  47 aaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||| || ||||||| |||||||||||||| ||||||||||||  | ||||||| ||||||||||    
T  39345653 aaattcagggactaaatagctatttcgcaaaattcagggacgaatttggccgattttttaaaattcaag 39345585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 35996185 - 35996106
Alignment:
Q  14 tggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaattt 93  Q
    ||||| |||||||  ||||||||||||||||  |||||||| || ||||| ||||||| ||| |||| ||||||||||||    
T  35996185 tggacggagggacctttttgatggacgtctgataaattcagggattaaattgatattttgcacaattgagggacgaattt 35996106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 7149661 - 7149560
Alignment:
Q  14 tggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattca 113  Q
    ||||| ||||||| |||||||| ||| | ||| |||||||  ||  ||||| |||||||||||||||||  || |||||   ||||||||||||||||||    
T  7149661 tggacggagggaccattttgattgacctatgttaaattcaaggatgaaataaatatttcgcaaaatttaaagatgaattcggctgatttttgaaaattca 7149562  T
Q  114 ag 115  Q
    ||    
T  7149561 ag 7149560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 47941927 - 47941854
Alignment:
Q  20 gagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaattt 93  Q
    |||||||  ||||||||||||||||  |||||||| || ||||| ||||||||||| |||| || |||||||||    
T  47941927 gagggacctttttgatggacgtctgataaattcagggattaaattgatatttcgcataattgagagacgaattt 47941854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 35401826 - 35401770
Alignment:
Q  59 taaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||||||||| ||||||| ||||||||||||  | ||||||| ||||||||||    
T  35401826 taaatagatatttcacaaaattcagggacgaatttggccgattttttaaaattcaag 35401770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 42982472 - 42982520
Alignment:
Q  67 tatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||||||||| |||||||||||| || ||||||| ||||||||||    
T  42982472 tatttcgcaaaattcagggacgaatttgacagatttttaaaaattcaag 42982520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 319344 - 319294
Alignment:
Q  65 gatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||||||||||| ||||||||| || || ||||||| ||||||||||    
T  319344 gatatttcgcaaaattcagggacgaaattgaccgatttttcaaaattcaag 319294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 132
Target Start/End: Original strand, 33266010 - 33266096
Alignment:
Q  47 aaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag-acgaactttagatatta 132  Q
    |||||||| || ||| | |||||||||||||||| ||| ||||| ||| | ||||||| |||||||||| ||||| || ||||||||    
T  33266010 aaattcagggactaatttgatatttcgcaaaattcaggaacgaaattagccgatttttcaaaattcaagaacgaatttgagatatta 33266096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 10372714 - 10372787
Alignment:
Q  20 gagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaattt 93  Q
    |||||||  ||||||||||||||||  |||||||| ||  |||| ||||||||||| |||| |||||| |||||    
T  10372714 gagggacctttttgatggacgtctgacaaattcagggatgaaattgatatttcgcataattgagggactaattt 10372787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 4173740 - 4173808
Alignment:
Q  47 aaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||| || ||| | |||||||||||||||| ||||||||| ||  | ||||||| ||||||||||    
T  4173740 aaattcagggactaatttgatatttcgcaaaattcagggacgaaattggccgatttttcaaaattcaag 4173808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 43507256 - 43507188
Alignment:
Q  47 aaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||| || ||| | |||||||||||||||| ||||||||| ||  | ||||||| ||||||||||    
T  43507256 aaattcagggactaatttgatatttcgcaaaattcagggacgaaattggccgatttttcaaaattcaag 43507188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 43508653 - 43508721
Alignment:
Q  47 aaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||| || ||| | |||||||||||||||| ||||||||| ||  | ||||||| ||||||||||    
T  43508653 aaattcagggactaatttgatatttcgcaaaattcagggacgaaattggccgatttttcaaaattcaag 43508721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 44558510 - 44558574
Alignment:
Q  29 ttttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaattt 93  Q
    ||||||||||||||||  |||||||| || ||| | ||||||||||| |||| ||||| ||||||    
T  44558510 ttttgatggacgtctgacaaattcagggactaagttgatatttcgcataattgagggatgaattt 44558574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 26242330 - 26242438
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||| ||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||    
T  26242330 agcttttggacggagggaccattttgatggacgtctgtaaaattcagagactaaatagatatttcgcaaaatttagggacgaatttggctgatttttgaa 26242429  T
Q  108 aattcaaga 116  Q
    |||||||||    
T  26242430 aattcaaga 26242438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 8609803 - 8609911
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||| ||||| ||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||  | ||||||| ||    
T  8609803 agcttttggacggagggaccattttgatggacgtctgtaaaattcagggactaaatagatatttcgcaaaattcagggacgaatttggccgattttttaa 8609902  T
Q  108 aattcaaga 116  Q
    |||||||||    
T  8609903 aattcaaga 8609911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 41825660 - 41825767
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||| ||||| ||| ||| ||||||||||||||||||||||||||| || |||||||||||||||||||||| | |||||||||||  |||||||||||    
T  41825660 agcttttggacggagtgaccattttgatggacgtctgtaaaattcagggactaaatagatatttcgcaaaattcaaggacgaatttatttgatttttgaa 41825759  T
Q  108 aattcaag 115  Q
    ||||||||    
T  41825760 aattcaag 41825767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 13282606 - 13282499
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||| ||||| ||||||| |||||||||||||| |||||||||||| || |||||||||||||||||||||| ||||||||||||  | ||||||| ||    
T  13282606 agcttttggacggagggaccattttgatggacgtttgtaaaattcagggactaaatagatatttcgcaaaattcagggacgaatttggccgattttttaa 13282507  T
Q  108 aattcaag 115  Q
    ||||||||    
T  13282506 aattcaag 13282499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 13486115 - 13486222
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||  || ||||||| | || ||||||| ||    
T  13486115 agcttttggacagagggaccattttgatggacgtctgtaaaattcagggactaaatagatatttcgcaaaatccagagacgaatctgaccgatttttaaa 13486214  T
Q  108 aattcaag 115  Q
    ||||||||    
T  13486215 aattcaag 13486222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 42941896 - 42941795
Alignment:
Q  14 tggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattca 113  Q
    ||||| |||||||||||||||||||| |||||||||||||| || |||||| ||||||| ||||||| ||||||||||||  ||||||||| ||||||||    
T  42941896 tggacggagggactattttgatggacatctgtaaaattcagggactaaataaatatttctcaaaattcagggacgaatttggctgattttttaaaattca 42941797  T
Q  114 ag 115  Q
    ||    
T  42941796 ag 42941795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 115
Target Start/End: Original strand, 13108351 - 13108459
Alignment:
Q  7 aagcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttga 106  Q
    |||||| ||||| ||||||| ||||||||||||||||||||||||||| || ||| | |||||||||||||||| ||||||| ||||| | ||||||| |    
T  13108351 aagcttttggacggagggaccattttgatggacgtctgtaaaattcagggactaatttgatatttcgcaaaattcagggacgtatttagccgatttttta 13108450  T
Q  107 aaattcaag 115  Q
    |||||||||    
T  13108451 aaattcaag 13108459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 22272452 - 22272368
Alignment:
Q  20 gagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgattttt 104  Q
    |||||||||||||||||||||| |||||||||||| || |||||||||||| ||||||||| |||||||||||| ||||||||||    
T  22272452 gagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcagggacgaatttgactgattttt 22272368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 132
Target Start/End: Original strand, 7745140 - 7745253
Alignment:
Q  20 gagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattc-aagacg 118  Q
    ||||||| ||||||||||| ||||||||||| ||| || |||||| ||||||||||||||| || |||||||||  ||||||||||||||||| ||||||    
T  7745140 gagggaccattttgatggatgtctgtaaaatacagggactaaataaatatttcgcaaaattcagagacgaatttggctgatttttgaaaattcaaagacg 7745239  T
Q  119 aactttagatatta 132  Q
    || || ||||||||    
T  7745240 aatttgagatatta 7745253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 7 - 115
Target Start/End: Original strand, 9673180 - 9673288
Alignment:
Q  7 aagcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttga 106  Q
    |||||| | ||| ||||||| ||||||||||||||||||||||||||| || |||||||||||||| ||||||| ||||||||||||| || |||  |||    
T  9673180 aagcttttagacggagggaccattttgatggacgtctgtaaaattcagggattaaatagatatttcacaaaattcagggacgaatttagctaattgatga 9673279  T
Q  107 aaattcaag 115  Q
    | |||||||    
T  9673280 agattcaag 9673288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 41042600 - 41042707
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||| ||||| ||||||| ||||||||||||| ||||||||||||| || |||||||||||||| ||||||| |||||| |||||  |  |||||| ||    
T  41042600 agcttttggacggagggaccattttgatggacgcctgtaaaattcagggactaaatagatatttcacaaaattcagggacaaatttggccaattttttaa 41042699  T
Q  108 aattcaag 115  Q
    ||||||||    
T  41042700 aattcaag 41042707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 38547344 - 38547226
Alignment:
Q  20 gagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaa-gacg 118  Q
    ||||||| ||||||||||||||||||||||||||| || ||| | |||||||||||||||| | ||||| ||||  | ||||||| ||||||||| ||||    
T  38547344 gagggaccattttgatggacgtctgtaaaattcagggactaatttgatatttcgcaaaattcatggacgtatttggccgattttttaaaattcaaggacg 38547245  T
Q  119 aactttagatattactcat 137  Q
    ||||| || ||||| ||||    
T  38547244 aacttgaggtattagtcat 38547226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 5036567 - 5036470
Alignment:
Q  14 tggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaatt 111  Q
    ||||| ||| ||| |||||||| |||||||||||||||||  || |||||||||||||| ||||||| |||||||||||| || ||||||| ||||||    
T  5036567 tggacggagagaccattttgatagacgtctgtaaaattcaaggactaaatagatatttcacaaaattcagggacgaatttgacggattttttaaaatt 5036470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 30 - 115
Target Start/End: Complemental strand, 27691260 - 27691175
Alignment:
Q  30 tttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    ||||||||||||||||||||||||| || ||| | |||||||||||||||| ||||||||| ||  | ||||||| ||||||||||    
T  27691260 tttgatggacgtctgtaaaattcagggactaatttgatatttcgcaaaattcagggacgaaattggccgatttttcaaaattcaag 27691175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 26238803 - 26238747
Alignment:
Q  59 taaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||    
T  26238803 taaatagatatttcgcaaaattcagggacgaatttggctgatttttgaaaattcaag 26238747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 43262149 - 43262201
Alignment:
Q  59 taaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaatt 111  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  43262149 taaatagatatttcgcaaaatttagggtcgaatttagctgatttttgaaaatt 43262201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 34681078 - 34681134
Alignment:
Q  59 taaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||||||||||||||||| ||||||||||||  | ||||||||||||||||||    
T  34681078 taaatagatatttcgcaaaattcagggacgaatttggccgatttttgaaaattcaag 34681134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 41823967 - 41823911
Alignment:
Q  59 taaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||||||||||||||||| | ||||||| ||| ||||||||||||||||||||    
T  41823967 taaatagatatttcgcaaaattcaaggacgaaattagctgatttttgaaaattcaag 41823911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 42943426 - 42943494
Alignment:
Q  47 aaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||| || |||||||||||||||||||||| ||||||||||||  | ||||||| ||||||||||    
T  42943426 aaattcagggactaaatagatatttcgcaaaattcagggacgaatttggccgattttttaaaattcaag 42943494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 120
Target Start/End: Original strand, 5038062 - 5038135
Alignment:
Q  47 aaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaagacgaa 120  Q
    |||||||| || ||||||| |||||||||||||| | | |||||||| || ||||||| |||||||||||||||    
T  5038062 aaattcagggactaaatagctatttcgcaaaattcaagaacgaatttgaccgattttttaaaattcaagacgaa 5038135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 47 - 140
Target Start/End: Complemental strand, 33761158 - 33761064
Alignment:
Q  47 aaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattc-aagacgaactttagatattactcatttc 140  Q
    |||||||| || ||| | |||||||||||||||| ||||||||| ||  ||||||||| ||||||| |||||||| || || ||||| |||||||    
T  33761158 aaattcagggactaatttgatatttcgcaaaattcagggacgaaattggctgatttttcaaaattcaaagacgaatttgaggtattagtcatttc 33761064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 135
Target Start/End: Complemental strand, 9672054 - 9671977
Alignment:
Q  59 taaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaa-gacgaactttagatattactc 135  Q
    |||||||||||||||||||||| | |||||||||| | |||||  ||||||||||| |||||| || || ||||||||    
T  9672054 taaatagatatttcgcaaaattcatggacgaatttgattgattggtgaaaattcaaggacgaatttaaggtattactc 9671977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 15305919 - 15305818
Alignment:
Q  14 tggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattca 113  Q
    ||||| ||||||||  ||||||||||||||||||||||||| || ||| | ||||||||  | |||| |||||| || || ||  |||||| ||||||||    
T  15305919 tggacggagggactgatttgatggacgtctgtaaaattcagggactaatttgatatttcaaataattcagggacaaaattgaccaatttttcaaaattca 15305820  T
Q  114 ag 115  Q
    ||    
T  15305819 ag 15305818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 15486288 - 15486187
Alignment:
Q  14 tggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattca 113  Q
    ||||| ||||||||  ||||||||||||||||||||||||| || ||| | ||||||||  | |||| |||||| || || ||  |||||| ||||||||    
T  15486288 tggacggagggactgatttgatggacgtctgtaaaattcagggactaatttgatatttcaaataattcagggacaaaattgaccaatttttcaaaattca 15486189  T
Q  114 ag 115  Q
    ||    
T  15486188 ag 15486187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 31201151 - 31201224
Alignment:
Q  20 gagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaattt 93  Q
    |||||||  ||||||||||||||||  |||||||| || ||||| ||||||||||| |||| | ||||||||||    
T  31201151 gagggacctttttgatggacgtctgataaattcagggattaaattgatatttcgcataattgatggacgaattt 31201224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 115
Target Start/End: Original strand, 33708842 - 33708926
Alignment:
Q  30 tttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||||||| |||||||||||| || ||| |  ||||||||||||||| ||||||||| || || | ||||| ||||||||||    
T  33708842 tttgatggacgtttgtaaaattcagggactaatttaatatttcgcaaaattcagggacgaaattgaccg-ttttttaaaattcaag 33708926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 35509303 - 35509235
Alignment:
Q  47 aaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||| || ||| | |||||||||||||||| ||||||||| || || ||||||| ||||||||||    
T  35509303 aaattcagggactaatttgatatttcgcaaaattcagggacgaaattgaccgatttttcaaaattcaag 35509235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 40339709 - 40339760
Alignment:
Q  21 agggactattttgatggacgtctgtaaaattcagagaataaatagatatttc 72  Q
    |||||| |||||||||||| |||||||||||||  || ||||||||||||||    
T  40339709 agggaccattttgatggacatctgtaaaattcatggactaaatagatatttc 40339760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 13484613 - 13484567
Alignment:
Q  68 atttcgcaaaatttagggacgaatttaactgatttttgaaaattcaa 114  Q
    ||||||||||||| ||||||||||||  | |||||||||||||||||    
T  13484613 atttcgcaaaattcagggacgaatttggccgatttttgaaaattcaa 13484567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 8608327 - 8608258
Alignment:
Q  47 aaattcagagaataaatagatatttcgcaaaattt-agggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||| || ||| | ||||||||||||||||| ||||||||| || || ||||||| ||||||||||    
T  8608327 aaattcagggactaatttgatatttcgcaaaatttcagggacgaaattgaccgatttttcaaaattcaag 8608258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 22273891 - 22273959
Alignment:
Q  47 aaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||| || ||||||||||||| |||||||| || ||| |||||  | ||||||| ||||||||||    
T  22273891 aaattcagggactaaatagatattttgcaaaattcagagacaaatttggccgattttttaaaattcaag 22273959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 29239187 - 29239255
Alignment:
Q  47 aaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||| || ||| | ||||||||| |||||||||||||||| ||  | ||||||| ||||||||||    
T  29239187 aaattcagggactaatttgatatttcgaaaaatttagggacgaaattggccgatttttcaaaattcaag 29239255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 31821540 - 31821464
Alignment:
Q  14 tggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaa 90  Q
    ||||| |||||||  ||||||||||||||||  |||||| | || ||| | ||||||||||| |||| |||||||||    
T  31821540 tggacggagggacctttttgatggacgtctgataaattctgggactaagttgatatttcgcataattgagggacgaa 31821464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 38548831 - 38548899
Alignment:
Q  47 aaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||| || ||| | |||||||||||||||| ||||||||| ||  | ||||||| ||||||||||    
T  38548831 aaattcagggattaatttgatatttcgcaaaattcagggacgaaattggccgatttttcaaaattcaag 38548899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 40)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 37796177 - 37796284
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||  ||||||||||  ||||||||||||    
T  37796177 agcttatggacggagggactattttgatggacgtccgtaaaattcagggactaaatagatatttcgcaaaatttgaggacgaatttggctgatttttgaa 37796276  T
Q  108 aattcaag 115  Q
    ||||||||    
T  37796277 aattcaag 37796284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 37115522 - 37115628
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||  | ||||||||||||| |||||||| ||| |||||||| |||||||||| ||    
T  37115522 agcttttggacggagggactattttgatggacgtctgtaaaattcaggtactaaatagatattttgcaaaattcaggaacgaatttgactgattttttaa 37115621  T
Q  108 aattcaa 114  Q
    |||||||    
T  37115622 aattcaa 37115628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 24228405 - 24228513
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||| |||||  |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||  |  |||||| ||    
T  24228405 agcttttggacgaagggaccattttgatggacgtctgtaaaattcagagactaaatagatatttcgcaaaattcagggacgaatttggccaattttttaa 24228504  T
Q  108 aattcaaga 116  Q
    |||||||||    
T  24228505 aattcaaga 24228513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 6602463 - 6602356
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||| ||||| ||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||  | |||| | ||||||| ||    
T  6602463 agcttttggacggagggaccattttgatggacgtctgtaaaattcagggactaaatagatatttcgcaaaattcagggataagtttagccgattttttaa 6602364  T
Q  108 aattcaag 115  Q
    ||||||||    
T  6602363 aattcaag 6602356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 39859225 - 39859332
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||| ||||| ||||||| ||||||| ||||||||||||||||||  || |||||||||||||||||||||| |||||| |||||  | ||||||| ||    
T  39859225 agcttttggacggagggaccattttgacggacgtctgtaaaattcaaggactaaatagatatttcgcaaaattcagggactaatttggccgattttttaa 39859324  T
Q  108 aattcaag 115  Q
    ||||||||    
T  39859325 aattcaag 39859332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 28 - 111
Target Start/End: Original strand, 47386225 - 47386308
Alignment:
Q  28 attttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaatt 111  Q
    |||||||||||||||||||||||| ||||| |||||| ||||||||||||||| | |||||||||| |||||||||| ||||||    
T  47386225 attttgatggacgtctgtaaaatttagagactaaataaatatttcgcaaaattcaaggacgaatttgactgattttttaaaatt 47386308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 45359452 - 45359359
Alignment:
Q  20 gagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattca 113  Q
    ||||||| ||||||||||||||||||||||||||  || |||||||||||||||||||||| | ||||| |||| || ||||||| ||||||||    
T  45359452 gagggaccattttgatggacgtctgtaaaattcaaggactaaatagatatttcgcaaaattcaaggacggatttgaccgattttttaaaattca 45359359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 112
Target Start/End: Original strand, 38474139 - 38474243
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||| ||||| || |||| |||||||| | |||||||||||||||  || |||||||||||||||||||||| |||||||||||| || ||||||| ||    
T  38474139 agcttttggacggatggaccattttgataggcgtctgtaaaattcaaggactaaatagatatttcgcaaaattcagggacgaatttgaccgatttttaaa 38474238  T
Q  108 aattc 112  Q
    |||||    
T  38474239 aattc 38474243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 46 - 128
Target Start/End: Original strand, 13039641 - 13039724
Alignment:
Q  46 aaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaa-gacgaactttagat 128  Q
    ||||||||| || ||||||| ||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||| ||||    
T  13039641 aaaattcagggactaaatagttatttcgcaaaatttagggacgaatttgattgatttttgaaaattcaaggacgaacttgagat 13039724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 14 - 93
Target Start/End: Original strand, 34776917 - 34776996
Alignment:
Q  14 tggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaattt 93  Q
    ||||| ||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||| ||| | ||||||    
T  34776917 tggacggagggaccattttgatggacgtctgtaaaattcagggactaaatagatatttcgcaaaattcaggaatgaattt 34776996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 30940421 - 30940529
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||| ||||| ||| ||| ||||||||| |||| |||||||||||| || ||||||||||||||| |||||| || |||||||||  | ||||||| ||    
T  30940421 agcttttggacggagagaccattttgatgaacgtttgtaaaattcagggactaaatagatatttcgtaaaattaagagacgaatttggccgattttttaa 30940520  T
Q  108 aattcaaga 116  Q
    |||||||||    
T  30940521 aattcaaga 30940529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 13168251 - 13168142
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcaga---gaataaatagatatttcgcaaaatttagggacgaatttaactgattttt 104  Q
    ||||| ||||| || |||| |||||||||||||||||||||||||||    || |||||||||||||||||||||| | ||||||||||  | |||||||    
T  13168251 agcttttggacggatggaccattttgatggacgtctgtaaaattcaggagggactaaatagatatttcgcaaaattcaaggacgaatttggccgattttt 13168152  T
Q  105 gaaaattcaa 114  Q
     |||||||||    
T  13168151 taaaattcaa 13168142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 115
Target Start/End: Original strand, 29996522 - 29996617
Alignment:
Q  20 gagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    ||||||| | ||||||||||||||||||||||||| || ||| | |||||||||||||||| |||||| || || || ||||||| ||||||||||    
T  29996522 gagggacgaatttgatggacgtctgtaaaattcagggattaatttgatatttcgcaaaattcagggacaaaattgaccgatttttcaaaattcaag 29996617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 31 - 115
Target Start/End: Complemental strand, 56435 - 56351
Alignment:
Q  31 ttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||||||||||||||||||| || ||| | |||||||||||||||| ||||||||| ||  | ||||||| ||||||||||    
T  56435 ttgatggacgtctgtaaaattcagggactaatttgatatttcgcaaaattcagggacgaaatttgccgatttttcaaaattcaag 56351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 13018157 - 13018054
Alignment:
Q  14 tggacagagggactattttgatggacgtctgtaaaattcagagaataaatag--atatttcgcaaaatttagggacgaatttaactgatttttgaaaatt 111  Q
    ||||| ||||||| |||||||||||||| ||| |||||||||||  ||||||  ||||||||| ||||||  ||||||||||  ||||||||| ||||||    
T  13018157 tggacggagggaccattttgatggacgtatgttaaattcagagatgaaatagatatatttcgctaaatttgaggacgaatttggctgattttttaaaatt 13018058  T
Q  112 caag 115  Q
    ||||    
T  13018057 caag 13018054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 115
Target Start/End: Original strand, 27666083 - 27666168
Alignment:
Q  30 tttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||||||| |||||||||||| || ||| | |||||||||||||||| ||||||||| ||  | ||||||| ||||||||||    
T  27666083 tttgatggacgtttgtaaaattcagggactaatttgatatttcgcaaaattcagggacgaaattggccgatttttcaaaattcaag 27666168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 48852343 - 48852416
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaattt 81  Q
    ||||| ||||| ||| ||| ||||||||||||||||||||||||||  || ||||||||||||| |||||||||    
T  48852343 agcttttggaccgagagaccattttgatggacgtctgtaaaattcaaggattaaatagatattttgcaaaattt 48852416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 13169683 - 13169751
Alignment:
Q  47 aaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||| || |||||||||||||||||||||| |||||| |||||  | ||||||||||||||||||    
T  13169683 aaattcagggactaaatagatatttcgcaaaattcagggacaaatttggccgatttttgaaaattcaag 13169751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 39857722 - 39857666
Alignment:
Q  59 taaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||||||||||||||||| |||||||||||| || ||||||| ||||||||||    
T  39857722 taaatagatatttcgcaaaattcagggacgaatttgaccgattttttaaaattcaag 39857666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 35691503 - 35691448
Alignment:
Q  60 aaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||| ||||||||||||||||| ||||||||| || ||||||||||||||||||    
T  35691503 aaatagctatttcgcaaaatttagagacgaatttgaccgatttttgaaaattcaag 35691448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 20478164 - 20478063
Alignment:
Q  14 tggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattca 113  Q
    ||||| ||||||||  ||||||||||||||| ||||||||| || ||| | ||||||||| |||||| ||| ||||| ||  | ||||||| ||||||||    
T  20478164 tggacggagggactgatttgatggacgtctgcaaaattcagggactaatttgatatttcgaaaaattcaggtacgaaattggccgatttttcaaaattca 20478065  T
Q  114 ag 115  Q
    ||    
T  20478064 ag 20478063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 35693378 - 35693453
Alignment:
Q  20 gagggactattttgatggacgtctgtaaaattcagagaataa--atagatatttcgcaaaatttagggacgaattt 93  Q
    ||||||| ||||||||||||||||||||||||||| || |||  | ||||||| ||||||||| | ||||||||||    
T  35693378 gagggaccattttgatggacgtctgtaaaattcagggactaattagagatattccgcaaaattcaaggacgaattt 35693453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 38549624 - 38549568
Alignment:
Q  59 taaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||||||||| ||||||| ||||||||| ||  ||||||||||||||||||||    
T  38549624 taaatagatatttcacaaaattcagggacgaacttggctgatttttgaaaattcaag 38549568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 93
Target Start/End: Original strand, 33038799 - 33038878
Alignment:
Q  14 tggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaattt 93  Q
    ||||| |||||||  |||||||||||||||| ||||||||| || ||| | ||||||||||| |||| ||||| ||||||    
T  33038799 tggacggagggacctttttgatggacgtctgaaaaattcagggactaagttgatatttcgcataattgagggatgaattt 33038878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 47 - 132
Target Start/End: Complemental strand, 35402058 - 35401972
Alignment:
Q  47 aaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaa-gacgaactttagatatta 132  Q
    |||||||| || ||| | |||||||||||||||| ||||||||| ||| | ||||||| ||||||||| |||||| || ||||||||    
T  35402058 aaattcagggactaatttgatatttcgcaaaattcagggacgaaattagccgatttttcaaaattcaaggacgaatttgagatatta 35401972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 35344298 - 35344371
Alignment:
Q  20 gagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaattt 93  Q
    |||||||  |||||||||||||||   |||||||| || ||||| ||||||||||| |||| ||||||||||||    
T  35344298 gagggacctttttgatggacgtcttataaattcagggattaaattgatatttcgcataattgagggacgaattt 35344371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 139
Target Start/End: Original strand, 48227941 - 48228034
Alignment:
Q  47 aaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattc-aagacgaactttagatattactcattt 139  Q
    |||||||| ||  ||||||||||||||||||||| |  ||||||||| || ||||||| ||||||| |||||||| || || ||||| ||||||    
T  48227941 aaattcagggacaaaatagatatttcgcaaaattcaaagacgaatttgaccgattttttaaaattcaaagacgaatttgaggtattaatcattt 48228034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 6605397 - 6605465
Alignment:
Q  47 aaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||| || ||||||| |||||||||||||| ||| || ||||| || ||||||| ||||||||||    
T  6605397 aaattcagggactaaatagctatttcgcaaaattcaggaacaaatttgaccgattttttaaaattcaag 6605465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 37114018 - 37113962
Alignment:
Q  59 taaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||||||||||||||||| ||||| |||||| ||  |||||| ||||||||||    
T  37114018 taaatagatatttcgcaaaattcagggatgaatttgaccaattttttaaaattcaag 37113962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 133
Target Start/End: Complemental strand, 37791744 - 37791656
Alignment:
Q  46 aaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaa-ttcaagacgaactttagatattac 133  Q
    |||||| || || ||||||||||||| ||||||||| |||| ||||||  ||||||||| |||| || |||||||| ||||| ||||||    
T  37791744 aaaatttagggactaaatagatatttggcaaaatttggggatgaatttggctgattttttaaaatttaaagacgaagtttaggtattac 37791656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 46996704 - 46996780
Alignment:
Q  14 tggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaa 90  Q
    ||||| |||||||  ||||||||||||||||  |||||||| || ||| | ||||||||||| |||| |||||||||    
T  46996704 tggacggagggacctttttgatggacgtctgacaaattcagtgactaagttgatatttcgcataattgagggacgaa 46996780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 48311749 - 48311801
Alignment:
Q  63 tagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||| ||||||||||||||| ||| |||||| |||||||||| ||||||||||    
T  48311749 tagacatttcgcaaaatttaaggatgaatttgactgattttttaaaattcaag 48311801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 24226657 - 24226602
Alignment:
Q  60 aaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||| |||||||||||||| | ||||||||||  | ||||||||||||||||||    
T  24226657 aaatagctatttcgcaaaattcaaggacgaatttggccgatttttgaaaattcaag 24226602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 46437183 - 46437128
Alignment:
Q  60 aaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||| |||||||||||||| |  |||||||||  ||||||||||||||||||||    
T  46437183 aaatagctatttcgcaaaattcaacgacgaatttggctgatttttgaaaattcaag 46437128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 132
Target Start/End: Original strand, 22155847 - 22155933
Alignment:
Q  47 aaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaa-gacgaactttagatatta 132  Q
    |||||||| ||  |||||| ||||| |||||||| | ||||||||||  | ||||||||||||||||| |||||| ||||| |||||    
T  22155847 aaattcagggacaaaatagctattttgcaaaattcatggacgaatttggccgatttttgaaaattcaaggacgaagtttaggtatta 22155933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 132
Target Start/End: Original strand, 22211762 - 22211848
Alignment:
Q  47 aaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaa-gacgaactttagatatta 132  Q
    |||||||| ||  |||||| ||||| |||||||| | ||||||||||  | ||||||||||||||||| |||||| ||||| |||||    
T  22211762 aaattcagggacaaaatagctattttgcaaaattcatggacgaatttggccgatttttgaaaattcaaggacgaagtttaggtatta 22211848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 100
Target Start/End: Complemental strand, 27955476 - 27955406
Alignment:
Q  30 tttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgat 100  Q
    |||||||||||||||  ||||||||| | ||| | ||||||||| |||||| ||||| ||||||| |||||    
T  27955476 tttgatggacgtctgacaaattcagaaattaagttgatatttcgtaaaattgagggatgaatttagctgat 27955406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 8423289 - 8423362
Alignment:
Q  20 gagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaattt 93  Q
    |||||||  ||||||| ||||||||  |||||||| || ||||| ||||||||||| |||| |||||| |||||    
T  8423289 gagggacctttttgattgacgtctgataaattcagggattaaattgatatttcgcataattgagggacaaattt 8423362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 35403619 - 35403687
Alignment:
Q  47 aaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||| || ||| | |||||||||||||||| ||||||||| ||  | ||||||| ||||||||||    
T  35403619 aaattcagggactaatttgatatttcgcaaaattcagggacgaaattggccgattttttaaaattcaag 35403687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 47384367 - 47384315
Alignment:
Q  63 tagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||||||||||||| | ||||||||||  || |||||| ||||||||||    
T  47384367 tagatatttcgcaaaattcaaggacgaatttggctcatttttcaaaattcaag 47384315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 2869707 - 2869600
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||| ||||| ||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||| || ||||||||||    
T  2869707 agcttttggacggagggaccattttgatggacgtctgtaaaatttagagactaaatagatatttcgcaaaattcagggacgaatttgaccgatttttgaa 2869608  T
Q  108 aattcaag 115  Q
    ||||||||    
T  2869607 aattcaag 2869600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 51896148 - 51896251
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||| ||||| |||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||| |||||| ||||| |||||||||| ||    
T  51896148 agcttttggacggagggactattttgatggacatctgtaaaattcagggactaaatagatatttcgcaaaattcagggacaaatttgactgattttttaa 51896247  T
Q  108 aatt 111  Q
    ||||    
T  51896248 aatt 51896251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 8 - 132
Target Start/End: Original strand, 50556093 - 50556218
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||| ||||| ||||||| |||||||| ||||||||||||||| || || |||||||||||||||||||||| || ||||||||| |||||||||| ||    
T  50556093 agcttttggacggagggaccattttgatagacgtctgtaaaatttagggactaaatagatatttcgcaaaattcagagacgaatttgactgattttttaa 50556192  T
Q  108 aattc-aagacgaactttagatatta 132  Q
    ||||| |||||||| || ||||||||    
T  50556193 aattcaaagacgaatttgagatatta 50556218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 31238491 - 31238598
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||| |||||||| |||| ||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||| |||||  | ||||||| ||    
T  31238491 agcttttggacagatggaccattttgatggacgtctgtaaaattcagggactaaatagatatttcgcaaaattcagggacaaatttggccgattttttaa 31238590  T
Q  108 aattcaag 115  Q
    ||||||||    
T  31238591 aattcaag 31238598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 37344470 - 37344363
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||| ||||| ||||||| |||||||||||||| ||||||||||| ||| ||||||| |||||||||||||| |||||||||||| || ||||||| ||    
T  37344470 agcttttggacggagggaccattttgatggacgtatgtaaaattcaaagactaaataggtatttcgcaaaattcagggacgaatttgaccgattttttaa 37344371  T
Q  108 aattcaag 115  Q
    ||||||||    
T  37344370 aattcaag 37344363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 34 - 139
Target Start/End: Original strand, 25278975 - 25279081
Alignment:
Q  34 atggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaa-gacgaactttagatatta 132  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||  ||||||||||||||||||| |||||| || || |||||    
T  25278975 atggacgtctgtaaaattcagggactaaatagatatttcgcaaaatttaggaacgaatttggctgatttttgaaaattcaaggacgaatttgaggtatta 25279074  T
Q  133 ctcattt 139  Q
     ||||||    
T  25279075 gtcattt 25279081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 25278364 - 25278471
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||| ||||| ||||||| |||||||||||||| |||||||||||  || ||||||| |||||||||||||| |||||||||||| || ||||||| ||    
T  25278364 agcttttggacggagggaccattttgatggacgtatgtaaaattcaaggactaaataggtatttcgcaaaattcagggacgaatttgaccgattttttaa 25278463  T
Q  108 aattcaag 115  Q
    ||||||||    
T  25278464 aattcaag 25278471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 4855962 - 4856069
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||| ||||| ||||||| ||||||||||||||||||||||||||| || ||| | |||||||||||||||| ||||||| ||||  | ||||||| ||    
T  4855962 agcttttggacggagggaccattttgatggacgtctgtaaaattcagggactaatttgatatttcgcaaaattcagggacgtatttggccgattttttaa 4856061  T
Q  108 aattcaag 115  Q
    ||||||||    
T  4856062 aattcaag 4856069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 3013466 - 3013579
Alignment:
Q  8 agcttatggacagagggactattttgatg------gacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatt 101  Q
    ||||| ||||| |||||||||||||||||      |||||||||||||||||| || |||||||||||||||||||||| | |||||||||| ||||||     
T  3013466 agcttttggacggagggactattttgatgtccatggacgtctgtaaaattcagggactaaatagatatttcgcaaaattcatggacgaatttgactgatg 3013565  T
Q  102 tttgaaaattcaag 115  Q
    ||| ||||||||||    
T  3013566 ttttaaaattcaag 3013579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 15104569 - 15104484
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaattt 93  Q
    ||||| ||||| || |||| ||||||||||||||||||||||||||| || |||||||||||||||||||||| ||| ||||||||    
T  15104569 agcttttggacggaaggaccattttgatggacgtctgtaaaattcagggactaaatagatatttcgcaaaattcaggaacgaattt 15104484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 139
Target Start/End: Original strand, 6818674 - 6818806
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||| ||||| ||||||| ||||||||||||||||||||||||||| || ||||||||||||| || ||||  |||||||| |||  | ||||||| ||    
T  6818674 agcttttggacggagggaccattttgatggacgtctgtaaaattcagggactaaatagatattttgctaaatccagggacgagtttggccgattttttaa 6818773  T
Q  108 aattcaa-gacgaactttagatattactcattt 139  Q
    ||||||| |||||| || || ||||| ||||||    
T  6818774 aattcaaggacgaatttgaggtattagtcattt 6818806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 28 - 111
Target Start/End: Complemental strand, 27087391 - 27087308
Alignment:
Q  28 attttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaatt 111  Q
    |||||||||||||| |||||||||||| || |||||||||||||||||||||| |||||| ||||| || ||||||| ||||||    
T  27087391 attttgatggacgtttgtaaaattcagggactaaatagatatttcgcaaaattcagggacaaatttgaccgattttttaaaatt 27087308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 34778134 - 34778241
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||| ||||| ||||||| |||||||||||| |||||||||||||| || ||| | |||||||||||||||| ||||||| ||||  | ||||||| ||    
T  34778134 agcttttggacggagggaccattttgatggacatctgtaaaattcagggactaatttgatatttcgcaaaattcagggacgtatttggccgattttttaa 34778233  T
Q  108 aattcaag 115  Q
    ||||||||    
T  34778234 aattcaag 34778241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 33602646 - 33602747
Alignment:
Q  14 tggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattca 113  Q
    ||||| ||||||||| ||||| ||||||||||||||||||| || ||| | |||||||| ||||||| ||||||||| || || ||||||| ||||||||    
T  33602646 tggacggagggactaatttgacggacgtctgtaaaattcagggactaatttgatatttcacaaaattcagggacgaaattgaccgatttttcaaaattca 33602745  T
Q  114 ag 115  Q
    ||    
T  33602746 ag 33602747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 46583558 - 46583659
Alignment:
Q  14 tggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattca 113  Q
    ||||| ||||||| | ||||||||||||||||||||||||| || ||| | |||||||||||||||| |||||| || || || ||||||| ||||||||    
T  46583558 tggacggagggacaaatttgatggacgtctgtaaaattcagggactaatttgatatttcgcaaaattcagggacaaaattgaccgatttttcaaaattca 46583657  T
Q  114 ag 115  Q
    ||    
T  46583658 ag 46583659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 45 - 111
Target Start/End: Original strand, 52643648 - 52643714
Alignment:
Q  45 taaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaatt 111  Q
    |||||||||| || |||||| ||||||||||||||| ||||||||||||||||||||||| ||||||    
T  52643648 taaaattcagggactaaataaatatttcgcaaaattcagggacgaatttaactgatttttaaaaatt 52643714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 9121670 - 9121771
Alignment:
Q  14 tggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattca 113  Q
    ||||| ||||||||  ||||||||||||||| ||||||||| || ||| | ||||||||| |||||||||||||||| ||  | ||||||| ||||||||    
T  9121670 tggacggagggactgatttgatggacgtctgcaaaattcagggactaatttgatatttcgaaaaatttagggacgaaattggccgatttttcaaaattca 9121769  T
Q  114 ag 115  Q
    ||    
T  9121770 ag 9121771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 3011944 - 3011880
Alignment:
Q  47 aaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaatt 111  Q
    ||||||||||| |||||||||||||||||||||| ||| |||||||| |||||||||| ||||||    
T  3011944 aaattcagagactaaatagatatttcgcaaaattcaggaacgaatttgactgattttttaaaatt 3011880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 25278931 - 25278875
Alignment:
Q  59 taaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||    
T  25278931 taaatagatatttcgcaaaattcagggacaaatttgactgatttttgaaaattcaag 25278875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 52641965 - 52641909
Alignment:
Q  59 taaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||| ||||||||||||||| ||||||||||||  ||||||||||||||||||||    
T  52641965 taaatatatatttcgcaaaattcagggacgaatttggctgatttttgaaaattcaag 52641909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 132
Target Start/End: Original strand, 2871076 - 2871162
Alignment:
Q  47 aaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaa-gacgaactttagatatta 132  Q
    ||||||| |||  |||||| |||||||||||||| ||||||||||||| | ||||||| ||||||||| |||||| || ||||||||    
T  2871076 aaattcaaagacaaaatagctatttcgcaaaattcagggacgaatttagccgatttttaaaaattcaaggacgaatttgagatatta 2871162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 47013084 - 47013185
Alignment:
Q  14 tggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattca 113  Q
    ||||| ||||||||  |||||||||||| || ||||||||| || ||| | ||||||||| |||||| ||||||||| ||  | ||||||| ||||||||    
T  47013084 tggacggagggactgatttgatggacgtttgcaaaattcagggactaatttgatatttcgaaaaattcagggacgaaattgtccgatttttcaaaattca 47013183  T
Q  114 ag 115  Q
    ||    
T  47013184 ag 47013185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 31236896 - 31236840
Alignment:
Q  59 taaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||||||||||||||||| |||||| ||||| || ||||||| ||||||||||    
T  31236896 taaatagatatttcgcaaaattcagggacaaatttgaccgattttttaaaattcaag 31236840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 33599307 - 33599239
Alignment:
Q  47 aaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    ||||||||||| ||| | |||||||||||||||| | |||||||||| || ||||||| ||||||||||    
T  33599307 aaattcagagattaatttgatatttcgcaaaattcatggacgaatttgaccgatttttcaaaattcaag 33599239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 27940724 - 27940651
Alignment:
Q  20 gagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaattt 93  Q
    |||||||  ||||||||||||||||  |||||||  || ||||| ||||||||||| |||| ||||||||||||    
T  27940724 gagggacctttttgatggacgtctgataaattcaaggattaaattgatatttcgcataattgagggacgaattt 27940651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 26223676 - 26223608
Alignment:
Q  47 aaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||| || ||| | |||||||||||||||| ||||||||| || || ||||||| ||||||||||    
T  26223676 aaattcagggactaatttgatatttcgcaaaattcagggacgaaattgaccgatttttcaaaattcaag 26223608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 115
Target Start/End: Original strand, 35479992 - 35480078
Alignment:
Q  29 ttttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    ||||||||||||||||  ||||||| ||| ||| | ||||||||||| |||| ||||| ||||||  |||||   ||||||||||||    
T  35479992 ttttgatggacgtctgacaaattcatagattaagttgatatttcgcataattgagggatgaatttggctgatccgtgaaaattcaag 35480078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 116
Target Start/End: Complemental strand, 51894656 - 51894587
Alignment:
Q  47 aaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaaga 116  Q
    |||||||| || |||||| ||||||||||||||| || ||| ||||| ||  |||||| |||||||||||    
T  51894656 aaattcagggactaaatatatatttcgcaaaattcagagacaaatttgacccattttttaaaattcaaga 51894587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 42134604 - 42134532
Alignment:
Q  14 tggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttaggga 86  Q
    ||||| |||||||  ||||||||||||||||  |||||||| || ||| | ||||||||||| |||| |||||    
T  42134604 tggacggagggacctttttgatggacgtctgacaaattcagggactaagttgatatttcgcataattgaggga 42134532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 46582099 - 46582031
Alignment:
Q  47 aaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||| || ||| | |||||||||||||||| ||||||||| ||  | ||||||| ||||||||||    
T  46582099 aaattcagggactaatttgatatttcgcaaaattcagggacgaaattggccgatttttcaaaattcaag 46582031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 50554240 - 50554184
Alignment:
Q  59 taaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    ||||||| |||||  ||||||| |||||||||||| || ||||||| ||||||||||    
T  50554240 taaatagctattttacaaaattcagggacgaatttgaccgattttttaaaattcaag 50554184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 114
Target Start/End: Complemental strand, 40560345 - 40560245
Alignment:
Q  14 tggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattca 113  Q
    ||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||  ||||||||| ||||||||    
T  40560345 tggacggagggactattttgatggacgtctgtaaaattcagggactaaatagatatttcgcaaaattcagggacgaatttggctgattttttaaaattca 40560246  T
Q  114 a 114  Q
    |    
T  40560245 a 40560245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 16763198 - 16763097
Alignment:
Q  14 tggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattca 113  Q
    ||||| ||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||| || ||||||| ||||||||    
T  16763198 tggacggagggaccattttgatggacgtctgtaaaattcagggactaaatagatatttcgcaaaattcagggacgaatttgaccgatttttaaaaattca 16763099  T
Q  114 ag 115  Q
    ||    
T  16763098 ag 16763097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 2767062 - 2766930
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||| ||||||||||||| |||||||| |||||||||||||||||| || |||||||||||||||||||||| | |||||| ||| || ||||||| ||    
T  2767062 agcttttggacagagggaccattttgatagacgtctgtaaaattcagggactaaatagatatttcgcaaaattcaaggacgagtttgaccgatttttaaa 2766963  T
Q  108 aattcaa-gacgaactttagatattactcattt 139  Q
    ||||||| |||||| || || ||||| ||||||    
T  2766962 aattcaaggacgaatttgagctattagtcattt 2766930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 139
Target Start/End: Original strand, 39664764 - 39664896
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||| ||||| ||||||| ||||||||||||||||||||||||||| || ||||||||||||||| ||||||  |||||||||||  | ||||||| ||    
T  39664764 agcttttggacggagggaccattttgatggacgtctgtaaaattcagggactaaatagatatttcgtaaaattcggggacgaatttggccgattttttaa 39664863  T
Q  108 aattcaa-gacgaactttagatattactcattt 139  Q
    ||||||| |||||| || || ||||| ||||||    
T  39664864 aattcaaggacgaatttgaggtattagtcattt 39664896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 14 - 114
Target Start/End: Original strand, 14389106 - 14389206
Alignment:
Q  14 tggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattca 113  Q
    ||||| ||||||| |||||||||||| | || ||||||||| || |||||||||||||||||||||| ||||||||||||  | ||||||||||||||||    
T  14389106 tggacggagggaccattttgatggacatttggaaaattcagggactaaatagatatttcgcaaaattcagggacgaatttggccgatttttgaaaattca 14389205  T
Q  114 a 114  Q
    |    
T  14389206 a 14389206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 7 - 115
Target Start/End: Original strand, 44709760 - 44709868
Alignment:
Q  7 aagcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttga 106  Q
    |||||| ||||| ||||||| ||||||||||||||||||||||||||| || ||||||| |||||||||||||| |||| |||||||  | | ||||| |    
T  44709760 aagcttttggacggagggaccattttgatggacgtctgtaaaattcagggactaaatagttatttcgcaaaattcagggccgaatttggccggtttttta 44709859  T
Q  107 aaattcaag 115  Q
    |||||||||    
T  44709860 aaattcaag 44709868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 6797635 - 6797529
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||| ||||| |||| || |||||||| ||||||||||||||| || || |||||||||||||||||||||| ||| ||||||||| |  |||||| ||    
T  6797635 agcttttggacggaggaaccattttgatagacgtctgtaaaattaagggactaaatagatatttcgcaaaattcaggaacgaatttagccaattttttaa 6797536  T
Q  108 aattcaa 114  Q
    |||||||    
T  6797535 aattcaa 6797529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 19908262 - 19908347
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaattt 93  Q
    ||||| ||||| ||||||| ||||||| ||||||||||||||||||  || |||||||||||||||||||||| |||||| |||||    
T  19908262 agcttttggacggagggaccattttgacggacgtctgtaaaattcaaggactaaatagatatttcgcaaaattcagggactaattt 19908347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 17696334 - 17696227
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||| ||||| ||| ||| |||||||| ||||| |||||||||||| || |||||||||||||  ||||||| ||||| ||||||  | ||||||||||    
T  17696334 agcttttggacggagtgaccattttgattgacgtttgtaaaattcagggactaaatagatattttccaaaattcagggatgaatttggccgatttttgaa 17696235  T
Q  108 aattcaag 115  Q
    ||||||||    
T  17696234 aattcaag 17696227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 37645615 - 37645508
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||||||||| ||||||| ||||||||  || |||| ||||||||  || ||||||||||||||  |||||||| |||||||||  |||||||||| ||    
T  37645615 agcttatggacggagggacaattttgataaacatctgcaaaattcaaggactaaatagatatttcctaaaatttaaggacgaattcgactgatttttaaa 37645516  T
Q  108 aattcaag 115  Q
    ||||||||    
T  37645515 aattcaag 37645508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 28 - 115
Target Start/End: Complemental strand, 39455277 - 39455190
Alignment:
Q  28 attttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    ||||||||||||||||||||||||||  || ||||||||||||| |||||||| |||   ||||||||| ||||||| ||||||||||    
T  39455277 attttgatggacgtctgtaaaattcatggactaaatagatattttgcaaaattcaggactgaatttaaccgattttttaaaattcaag 39455190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 16377213 - 16377298
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaattt 93  Q
    ||||| ||||| ||||||| |||||||||||||| |||||||||||  || ||||||||||||| |||||||| |||||| |||||    
T  16377213 agcttttggacggagggaccattttgatggacgtatgtaaaattcaaggactaaatagatattttgcaaaattcagggacaaattt 16377298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 46 - 136
Target Start/End: Original strand, 31475079 - 31475170
Alignment:
Q  46 aaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag-acgaactttagatattactca 136  Q
    ||||||||| || |||||||||||||| |||||||| | ||||||||| ||||||||||||||||| ||| ||||| || || |||||||||    
T  31475079 aaaattcagggattaaatagatatttctcaaaatttggtgacgaatttgactgatttttgaaaattaaagaacgaagttgaggtattactca 31475170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 116
Target Start/End: Original strand, 37646477 - 37646547
Alignment:
Q  46 aaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaaga 116  Q
    ||||||||| || ||||||||||||||||| |||||  |||||||||| |||||||||||||| |||||||    
T  37646477 aaaattcagggactaaatagatatttcgcagaatttgaggacgaatttgactgatttttgaaagttcaaga 37646547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 42519233 - 42519291
Alignment:
Q  20 gagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaa 78  Q
    ||||||| ||||||||||||||||||||||||||| || ||||||||||||| ||||||    
T  42519233 gagggaccattttgatggacgtctgtaaaattcagggactaaatagatattttgcaaaa 42519291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 59 - 120
Target Start/End: Original strand, 162087 - 162148
Alignment:
Q  59 taaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaagacgaa 120  Q
    ||||||||||||| | ||||||| ||| ||||||| ||||||||||||||||||||||||||    
T  162087 taaatagatattttgtaaaatttggggtcgaatttgactgatttttgaaaattcaagacgaa 162148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 24208064 - 24208165
Alignment:
Q  14 tggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattca 113  Q
    ||||| ||||||||  ||||||||||||||||||||||||| || ||| | ||||||||| | |||| ||||||||| ||  | ||||||| ||||||||    
T  24208064 tggacggagggactgatttgatggacgtctgtaaaattcagggactaatttgatatttcgaataattcagggacgaaattggccgatttttcaaaattca 24208163  T
Q  114 ag 115  Q
    ||    
T  24208164 ag 24208165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 19906759 - 19906703
Alignment:
Q  59 taaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||||||||||||||||| |||||||||||| || ||||||| ||||||||||    
T  19906759 taaatagatatttcgcaaaattcagggacgaatttgaccgattttttaaaattcaag 19906703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 132
Target Start/End: Complemental strand, 39663243 - 39663157
Alignment:
Q  47 aaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaa-gacgaactttagatatta 132  Q
    |||||||| || ||||||| ||||| |||||||| |||||||||||| || ||||||| ||||||||| |||||| ||||| |||||    
T  39663243 aaattcagggactaaatagctattttgcaaaattcagggacgaatttgaccgatttttaaaaattcaaggacgaattttaggtatta 39663157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 6786003 - 6786104
Alignment:
Q  14 tggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattca 113  Q
    ||||| ||||||||  ||||||||||||||||||||||||| || ||| | ||||||||  | |||| ||||||||| ||  | ||||||| ||||||||    
T  6786003 tggacggagggactgatttgatggacgtctgtaaaattcagggactaatttgatatttcaaataattaagggacgaaattggccgatttttcaaaattca 6786102  T
Q  114 ag 115  Q
    ||    
T  6786103 ag 6786104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 15432435 - 15432371
Alignment:
Q  29 ttttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaattt 93  Q
    ||||||||||||||||  ||||||||||| ||||| ||||||||||| |||| ||||| ||||||    
T  15432435 ttttgatggacgtctgacaaattcagagactaaattgatatttcgcataattgagggatgaattt 15432371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 114
Target Start/End: Complemental strand, 16376825 - 16376758
Alignment:
Q  47 aaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaa 114  Q
    |||||||| || ||||||| ||||||| |||||| |||||||||||| || ||||||| |||||||||    
T  16376825 aaattcagggactaaatagctatttcgtaaaattcagggacgaatttgaccgattttttaaaattcaa 16376758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 37020630 - 37020529
Alignment:
Q  14 tggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattca 113  Q
    ||||| ||||||||  ||||||||||||||| ||||||||| || ||| | ||||||||  |||||| | |||| || || || ||||||| ||||||||    
T  37020630 tggacggagggactgatttgatggacgtctgcaaaattcagggactaatttgatatttcaaaaaattcaaggacaaaattgaccgatttttcaaaattca 37020531  T
Q  114 ag 115  Q
    ||    
T  37020530 ag 37020529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 19581491 - 19581439
Alignment:
Q  59 taaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaatt 111  Q
    |||||||||||||||||||||| |||||| |||||  ||||||||| ||||||    
T  19581491 taaatagatatttcgcaaaattcagggacaaatttggctgatttttaaaaatt 19581439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 39456780 - 39456848
Alignment:
Q  47 aaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||| || ||||||| ||||| |||||||| | |||||||||||||  |||||| ||||||||||    
T  39456780 aaattcagggactaaatagctattttgcaaaattcatggacgaatttaaccaattttttaaaattcaag 39456848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 34400390 - 34400335
Alignment:
Q  60 aaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||| |||||||||||||| ||||| ||||||  | ||||||||||||||||||    
T  34400390 aaatagctatttcgcaaaattcagggatgaatttggccgatttttgaaaattcaag 34400335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 15372615 - 15372542
Alignment:
Q  20 gagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaattt 93  Q
    |||||||  ||||||||||||||||  |||||||| || ||||| ||||||| ||| |||| |||| |||||||    
T  15372615 gagggacctttttgatggacgtctgataaattcagggattaaattgatattttgcataattgaggggcgaattt 15372542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 29909662 - 29909735
Alignment:
Q  14 tggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggac 87  Q
    ||||| |||||||  ||||||||||||||||  ||||| || || ||||| ||||||||||| |||| ||||||    
T  29909662 tggacggagggacctttttgatggacgtctgacaaattaagggactaaattgatatttcgcataattgagggac 29909735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 41706655 - 41706582
Alignment:
Q  20 gagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaattt 93  Q
    |||||||  |||||||||||||  |  |||||||| || ||||| ||||||||||| |||| ||||||||||||    
T  41706655 gagggacctttttgatggacgttcgataaattcagggattaaattgatatttcgcataattgagggacgaattt 41706582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 116
Target Start/End: Original strand, 42003492 - 42003561
Alignment:
Q  47 aaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaaga 116  Q
    ||||||||||| ||||| ||||||||||| |||| | | |||||||| ||||||  || |||||||||||    
T  42003492 aaattcagagattaaattgatatttcgcataattgatgaacgaatttgactgatccttaaaaattcaaga 42003561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 37417380 - 37417316
Alignment:
Q  29 ttttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaattt 93  Q
    ||||||||||||||||  |||||||| || ||| | ||||||||||| |||| ||||| ||||||    
T  37417380 ttttgatggacgtctgacaaattcagggactaagttgatatttcgcataattgagggatgaattt 37417316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 14 - 114
Target Start/End: Original strand, 32439093 - 32439193
Alignment:
Q  14 tggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattca 113  Q
    ||||| ||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||| || ||||||| ||||||||    
T  32439093 tggacggagggaccattttgatggacgtctgtaaaattcagggactaaatagatatttcgcaaaattcagggacgaatttgaccgattttttaaaattca 32439192  T
Q  114 a 114  Q
    |    
T  32439193 a 32439193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 10568527 - 10568420
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||| ||||| |||||||||||||||| |||||||||||||||||| || |||||| ||||||||| ||||| | |||||||||| |||||||||||||    
T  10568527 agcttttggacggagggactattttgatagacgtctgtaaaattcagggactaaataaatatttcgctaaattcaaggacgaatttgactgatttttgaa 10568428  T
Q  108 aattcaag 115  Q
    ||||||||    
T  10568427 aattcaag 10568420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 14 - 112
Target Start/End: Complemental strand, 20523488 - 20523390
Alignment:
Q  14 tggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattc 112  Q
    ||||| ||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||| | |||||||||| || |||||||||||||||    
T  20523488 tggacggagggaccattttgatggacgtctgtaaaattcagggactaaatagatatttcgcaaaattcaaggacgaatttgaccgatttttgaaaattc 20523390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 6899613 - 6899506
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||| |||||  |||||| ||||||||||| |||||||||||| || || |||||||||||||| |||||||||| ||||||||| |||||||||||||    
T  6899613 agcttttggacgaagggaccattttgatggatgtctgtaaaatttagggactaaatagatatttcacaaaatttagagacgaatttgactgatttttgaa 6899514  T
Q  108 aattcaag 115  Q
    ||||||||    
T  6899513 aattcaag 6899506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 13613584 - 13613685
Alignment:
Q  14 tggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattca 113  Q
    ||||| ||||||||| ||||||||||||||||||||||||| || ||| | |||||||||||||||| |||||||||||| || ||||||| ||||||||    
T  13613584 tggacggagggactaatttgatggacgtctgtaaaattcagggactaatttgatatttcgcaaaattcagggacgaatttgaccgatttttcaaaattca 13613683  T
Q  114 ag 115  Q
    ||    
T  13613684 ag 13613685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 7372954 - 7373060
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||| ||||| ||||||| ||||||||||||| ||||||||||||| || |||||| ||||||||||||||| |||||||||||| ||  |||||| ||    
T  7372954 agcttttggacggagggaccattttgatggacgcctgtaaaattcagggactaaataaatatttcgcaaaattcagggacgaatttgaccaatttttaaa 7373053  T
Q  108 aattcaa 114  Q
    |||||||    
T  7373054 aattcaa 7373060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 11355350 - 11355243
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||| ||||| ||||||| |||||| ||| |||||||||||||||| || | ||||||||||||  |||||| || ||||||||| || ||||||| ||    
T  11355350 agcttttggacggagggaccattttggtggccgtctgtaaaattcagggagttaatagatatttcataaaattcagtgacgaatttgaccgattttttaa 11355251  T
Q  108 aattcaag 115  Q
    ||||||||    
T  11355250 aattcaag 11355243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 115
Target Start/End: Original strand, 14338483 - 14338578
Alignment:
Q  20 gagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    ||||||| |||||||||||||||||| |||||||| ||  || |||| ||||||||||||||  ||||||||||  ||||||||| ||||||||||    
T  14338483 gagggaccattttgatggacgtctgtgaaattcagggatgaattagacatttcgcaaaatttgaggacgaatttggctgatttttaaaaattcaag 14338578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 32517005 - 32516898
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||| ||||| ||||||| |||||||||||||| |||||||||||  |  ||||||| ||||| | |||||| |||||||||||| || ||||||| ||    
T  32517005 agcttttggacggagggacaattttgatggacgtatgtaaaattcaagggctaaataggtattttgtaaaattcagggacgaatttgaccgattttttaa 32516906  T
Q  108 aattcaag 115  Q
    ||||||||    
T  32516905 aattcaag 32516898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 32455893 - 32455994
Alignment:
Q  14 tggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattca 113  Q
    ||||| ||||||||  ||||||||||||||| ||||||||| || ||| | ||||||||| |||||| ||||||||| || || ||||||| ||||||||    
T  32455893 tggacggagggactgatttgatggacgtctgcaaaattcagtgactaatttgatatttcgaaaaattcagggacgaaattgaccgatttttcaaaattca 32455992  T
Q  114 ag 115  Q
    ||    
T  32455993 ag 32455994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 6902910 - 6902965
Alignment:
Q  59 taaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  6902910 taaatagatatt-cgcaaaatttagggacgaatttgactgatttttgaaaattcaag 6902965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 9398782 - 9398716
Alignment:
Q  14 tggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatt 80  Q
    ||||| ||||||| ||||||||| |||||| |||||||||| || ||||||||||||||||||||||    
T  9398782 tggacggagggaccattttgatgaacgtctataaaattcagggactaaatagatatttcgcaaaatt 9398716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 3456870 - 3456769
Alignment:
Q  14 tggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattca 113  Q
    ||||| ||||||||  ||||||||||||||| ||||||||| || ||| | ||||||||| |||||| ||||||||| ||  | ||||||| ||||||||    
T  3456870 tggacggagggactgatttgatggacgtctgcaaaattcagggactaatttgatatttcgaaaaattcagggacgaaattggccgatttttcaaaattca 3456771  T
Q  114 ag 115  Q
    ||    
T  3456770 ag 3456769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 33276878 - 33276822
Alignment:
Q  59 taaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||||||||||||||||||||  |||||||| |||||||||| ||||||||||    
T  33276878 taaatagatatttcgcaaaatttagaaacgaatttgactgattttttaaaattcaag 33276822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 59 - 114
Target Start/End: Original strand, 7051257 - 7051312
Alignment:
Q  59 taaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaa 114  Q
    |||||||||||||||||||||| || ||||||||| |||||||||| |||||||||    
T  7051257 taaatagatatttcgcaaaattcagagacgaatttgactgattttttaaaattcaa 7051312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 135
Target Start/End: Complemental strand, 21068702 - 21068625
Alignment:
Q  59 taaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaa-gacgaactttagatattactc 135  Q
    ||||||||||||||| |||||||  |||||||||| ||||||| |||||||||||| |||||| || || ||||||||    
T  21068702 taaatagatatttcgtaaaatttgtggacgaatttgactgattgttgaaaattcaaggacgaatttgaggtattactc 21068625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 2968246 - 2968182
Alignment:
Q  29 ttttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaattt 93  Q
    ||||||||||||||||  |||||||| || ||||| ||||||||||| |||| ||||||||||||    
T  2968246 ttttgatggacgtctgataaattcagggattaaattgatatttcgcataattgagggacgaattt 2968182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 7049885 - 7049839
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcag 54  Q
    ||||| ||||| ||||||| |||||||||||||||||||||||||||    
T  7049885 agcttttggacggagggaccattttgatggacgtctgtaaaattcag 7049839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 73 - 115
Target Start/End: Original strand, 8605351 - 8605393
Alignment:
Q  73 gcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||||||||||||||||  ||||||||||||||||||||    
T  8605351 gcaaaatttagggacgaatttggctgatttttgaaaattcaag 8605393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 9400051 - 9400103
Alignment:
Q  63 tagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||||||||||||| | ||| |||||| |||||||||| ||||||||||    
T  9400051 tagatatttcgcaaaattcaaggatgaatttgactgatttttcaaaattcaag 9400103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 10569931 - 10569987
Alignment:
Q  59 taaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    ||||||||||||| |||||||| | ||||||||||  ||||||||| ||||||||||    
T  10569931 taaatagatattttgcaaaattcatggacgaatttggctgattttttaaaattcaag 10569987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 3018440 - 3018510
Alignment:
Q  20 gagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaa 90  Q
    |||||||  ||||||||||||||||  |||||||| || ||| | ||||||||||| |||| |||||||||    
T  3018440 gagggacctttttgatggacgtctgacaaattcagggactaagttgatatttcgcataattgagggacgaa 3018510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 4641471 - 4641398
Alignment:
Q  20 gagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaattt 93  Q
    |||||||  |||||||||| |||||  |||||||| || ||||| |||||||| || |||| ||||||||||||    
T  4641471 gagggacctttttgatggaggtctgataaattcagggattaaattgatatttcacataattgagggacgaattt 4641398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 115
Target Start/End: Complemental strand, 7049847 - 7049807
Alignment:
Q  75 aaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||| ||||||||||||  ||||||||||||||||||||    
T  7049847 aaaattcagggacgaatttggctgatttttgaaaattcaag 7049807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 7371244 - 7371196
Alignment:
Q  67 tatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||||||||| |||||| |||||  | ||||||||||||||||||    
T  7371244 tatttcgcaaaattcagggaccaatttggccgatttttgaaaattcaag 7371196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 11357194 - 11357262
Alignment:
Q  47 aaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||| || ||||| | |||||  ||||||| |||||||||||| || ||||||| ||||||||||    
T  11357194 aaattcagggactaaattgctatttttcaaaattcagggacgaatttgaccgattttttaaaattcaag 11357262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 17574446 - 17574339
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||| ||||| ||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||  | ||||||| ||    
T  17574446 agcttttggacggagggaccattttgatggacgtctgtaaaattcagggactaaatagatatttcgcaaaattcagggacgaatttggccgattttttaa 17574347  T
Q  108 aattcaag 115  Q
    ||||||||    
T  17574346 aattcaag 17574339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 36057609 - 36057716
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||| ||||| ||||||| ||||||||||||||||||||||||||| |  |||||||||||||||||||||| ||||||||||||  | ||||||||||    
T  36057609 agcttttggacggagggaccattttgatggacgtctgtaaaattcagggtctaaatagatatttcgcaaaattcagggacgaatttggccgatttttgaa 36057708  T
Q  108 aattcaag 115  Q
    ||||||||    
T  36057709 aattcaag 36057716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 2179915 - 2179808
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||| ||||| ||||||| ||||||||||| ||||||||||||||| || |||||||||||||| ||||||| |||||||||||| || ||||||| ||    
T  2179915 agcttttggacggagggaccattttgatggatgtctgtaaaattcagggattaaatagatatttcacaaaattcagggacgaatttgaccgattttttaa 2179816  T
Q  108 aattcaag 115  Q
    ||||||||    
T  2179815 aattcaag 2179808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 30468276 - 30468383
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||| ||||| ||||||| ||||||||||||||||||||||||||  || |||||||||||||||||||||| || ||||||||| ||  |||||| ||    
T  30468276 agcttttggacggagggaccattttgatggacgtctgtaaaattcaaggactaaatagatatttcgcaaaattgagagacgaatttgaccaattttttaa 30468375  T
Q  108 aattcaag 115  Q
    ||||||||    
T  30468376 aattcaag 30468383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 7267971 - 7267864
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||| ||||| ||||||  ||||||||||||||||||||||||||| || |||||||||||||||||||||| || |||||||||    ||||||| ||    
T  7267971 agcttttggacggagggatcattttgatggacgtctgtaaaattcagggactaaatagatatttcgcaaaattcagtgacgaatttggacgattttttaa 7267872  T
Q  108 aattcaag 115  Q
    ||||||||    
T  7267871 aattcaag 7267864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 24 - 115
Target Start/End: Complemental strand, 8539787 - 8539696
Alignment:
Q  24 gactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||||||||||||| |||||||||||| || |||||||||||||||||||||| | | |||||||| | |||||||| ||||||||||    
T  8539787 gactattttgatggacgtttgtaaaattcagggactaaatagatatttcgcaaaattcaagaacgaatttgattgatttttcaaaattcaag 8539696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 34327763 - 34327656
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||| ||||| ||| ||| ||||||||||||||||||||||||||| || |||||||||||||||||||||| || |||||||||  |  ||||| |||    
T  34327763 agcttttggacggagagaccattttgatggacgtctgtaaaattcagggactaaatagatatttcgcaaaattcagcgacgaatttggccaattttagaa 34327664  T
Q  108 aattcaag 115  Q
    ||||||||    
T  34327663 aattcaag 34327656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 18625004 - 18625133
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||| ||||| || |||| |||||||||||||  |||||||||||| || |||||||||||||| ||||||| ||||||||||||| |||||   ||||    
T  18625004 agcttttggacggaaggaccattttgatggacgagtgtaaaattcagggactaaatagatatttcacaaaattcagggacgaatttagctgatcagtgaa 18625103  T
Q  108 aattcaa-gacgaactttagatattactca 136  Q
    ||||||| |||||| || || |||||||||    
T  18625104 aattcaaggacgaatttgaggtattactca 18625133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 30 - 140
Target Start/End: Original strand, 24541230 - 24541341
Alignment:
Q  30 tttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaa-gacgaactttagat 128  Q
    ||||||||||||||||||||||||| || ||| | |||||||||||||||| ||||||||| ||  | ||||||| ||||||||| |||||| || || |    
T  24541230 tttgatggacgtctgtaaaattcagggactaatttgatatttcgcaaaattcagggacgaaattggccgatttttcaaaattcaatgacgaatttgaggt 24541329  T
Q  129 attactcatttc 140  Q
    |||| |||||||    
T  24541330 attagtcatttc 24541341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 30463989 - 30463921
Alignment:
Q  47 aaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||| || |||||||||||||||||||||| |||||||||||| || ||||||| ||||||||||    
T  30463989 aaattcagggactaaatagatatttcgcaaaattcagggacgaatttgaccgattttttaaaattcaag 30463921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 114
Target Start/End: Original strand, 29621783 - 29621883
Alignment:
Q  14 tggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattca 113  Q
    ||||| ||||||||  ||||||||||||||| ||||||||| || ||| | ||||||||| |||||| ||||||||| ||  | ||||||| ||||||||    
T  29621783 tggacggagggactgatttgatggacgtctgcaaaattcagggactaatttgatatttcgaaaaattcagggacgaaattggccgatttttcaaaattca 29621882  T
Q  114 a 114  Q
    |    
T  29621883 a 29621883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 111
Target Start/End: Original strand, 43492131 - 43492197
Alignment:
Q  45 taaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaatt 111  Q
    |||||||||| || |||||||||||||||||||||| ||||| ||| ||  ||||||||||||||||    
T  43492131 taaaattcagggactaaatagatatttcgcaaaattcagggatgaacttggctgatttttgaaaatt 43492197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 2854329 - 2854429
Alignment:
Q  14 tggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattca 113  Q
    ||||| ||||||| | |||| |||||||||||||||||||| || ||| | ||| ||||| |||||| ||||||||| || || ||||||| ||||||||    
T  2854329 tggacggagggacgaatttgttggacgtctgtaaaattcagggactaatttgat-tttcgaaaaattcagggacgaaattgaccgatttttcaaaattca 2854427  T
Q  114 ag 115  Q
    ||    
T  2854428 ag 2854429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 40780672 - 40780571
Alignment:
Q  14 tggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattca 113  Q
    ||||| ||||||||  |||||||||||| || ||||||||| || ||| | ||||||||| |||||| ||||||||| ||  | ||||||| ||||||||    
T  40780672 tggacggagggactgatttgatggacgtttgcaaaattcagggactaatttgatatttcgaaaaattcagggacgaaattgtccgatttttcaaaattca 40780573  T
Q  114 ag 115  Q
    ||    
T  40780572 ag 40780571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 135
Target Start/End: Complemental strand, 41493921 - 41493844
Alignment:
Q  59 taaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaa-gacgaactttagatattactc 135  Q
    |||||||||||||| ||||||||  ||||||||||  ||||||||||||||||||| |||||| || || ||||||||    
T  41493921 taaatagatatttcacaaaatttgaggacgaatttggctgatttttgaaaattcaaggacgaagttgaggtattactc 41493844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 12738736 - 12738804
Alignment:
Q  47 aaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||| || |||||||||||||||||||||| ||| ||||||||  | ||||||| ||||||||||    
T  12738736 aaattcagggactaaatagatatttcgcaaaattcaggtacgaatttggccgattttttaaaattcaag 12738804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 12801559 - 12801627
Alignment:
Q  47 aaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||| || |||||||||||||||||||||| ||| ||||||||  | ||||||| ||||||||||    
T  12801559 aaattcagggactaaatagatatttcgcaaaattcaggtacgaatttggccgattttttaaaattcaag 12801627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 114
Target Start/End: Original strand, 8541283 - 8541338
Alignment:
Q  59 taaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaa 114  Q
    |||||||||||||||||||||| ||||||||||||  | ||||||| |||||||||    
T  8541283 taaatagatatttcgcaaaattcagggacgaatttggccgattttttaaaattcaa 8541338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 139
Target Start/End: Original strand, 7269446 - 7269539
Alignment:
Q  47 aaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattc-aagacgaactttagatattactcattt 139  Q
    |||||||| || ||| | |||||||||||||||| ||||||||| ||| | ||||||| ||||||| |||||||| || || ||||| ||||||    
T  7269446 aaattcagggactaatttgatatttcgcaaaattcagggacgaaattagccgattttttaaaattcaaagacgaatttgaggtattagtcattt 7269539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 115
Target Start/End: Original strand, 42473625 - 42473710
Alignment:
Q  30 tttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    ||||||||||||||||||||||||| || ||  | ||||||||| | |||| ||||||||| ||  | ||||||| ||||||||||    
T  42473625 tttgatggacgtctgtaaaattcagggactattttgatatttcgaataattcagggacgaaattggccgatttttcaaaattcaag 42473710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 18728604 - 18728680
Alignment:
Q  14 tggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaa 90  Q
    ||||| |||||||  ||||||||||||||||  |||||||| || ||| | ||||||||||| |||| |||||||||    
T  18728604 tggacggagggacctttttgatggacgtctgacaaattcagggactaagttgatatttcgcataattaagggacgaa 18728680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 32087636 - 32087560
Alignment:
Q  14 tggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaa 90  Q
    ||||| |||||||  |||||||||||||||| |||||| || || ||| | ||||||||||| |||| |||||||||    
T  32087636 tggacggagggacctttttgatggacgtctgaaaaattaagggactaagttgatatttcgcataattaagggacgaa 32087560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 38178110 - 38178174
Alignment:
Q  29 ttttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaattt 93  Q
    ||||||||||||||||  ||||||||| | ||||| ||||||||||| |||| ||||| ||||||    
T  38178110 ttttgatggacgtctgacaaattcagatactaaattgatatttcgcataattgagggatgaattt 38178174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 38205334 - 38205398
Alignment:
Q  29 ttttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaattt 93  Q
    ||||||||||||||||  ||||||||| | ||||| ||||||||||| |||| ||||| ||||||    
T  38205334 ttttgatggacgtctgacaaattcagatactaaattgatatttcgcataattgagggatgaattt 38205398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 34328840 - 34328895
Alignment:
Q  60 aaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||| ||||| |||||||| | |||||||||| || ||||||||||||||||||    
T  34328840 aaatagctattttgcaaaattcatggacgaatttgaccgatttttgaaaattcaag 34328895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 2852957 - 2852907
Alignment:
Q  65 gatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||||||||||| ||||||||| || || ||||||| ||||||||||    
T  2852957 gatatttcgcaaaattcagggacgaaattgaccgattttttaaaattcaag 2852907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 28813765 - 28813811
Alignment:
Q  47 aaattcagagaataaatagatatttcgcaaaatttagggacgaattt 93  Q
    |||||||| || |||||||||||||||||||||| | ||||||||||    
T  28813765 aaattcagggactaaatagatatttcgcaaaattcaaggacgaattt 28813811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 33256522 - 33256456
Alignment:
Q  14 tggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatt 80  Q
    ||||| |||||||| ||||||||||||||||  ||||||| ||| ||| | ||||||||||| ||||    
T  33256522 tggacggagggacttttttgatggacgtctgacaaattcaaagattaagttgatatttcgcataatt 33256456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 29620227 - 29620159
Alignment:
Q  47 aaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    ||||||||||| ||| | ||||||||| |||||| ||||||||| ||  | ||||||| ||||||||||    
T  29620227 aaattcagagactaatttgatatttcgaaaaattcagggacgaaattggccgatttttcaaaattcaag 29620159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 35395455 - 35395379
Alignment:
Q  14 tggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaa 90  Q
    ||||| |||||||  |||||||||||||||   ||||||||  | ||||| ||||||||||| |||| |||||||||    
T  35395455 tggacggagggacctttttgatggacgtctaacaaattcaggaactaaattgatatttcgcataattgagggacgaa 35395379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 38596975 - 38596911
Alignment:
Q  29 ttttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaattt 93  Q
    |||||||||||||||   |||||||| || ||| | ||||||||||| |||| ||||||||||||    
T  38596975 ttttgatggacgtctaacaaattcagggactaagttgatatttcgcataattgagggacgaattt 38596911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 45)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 35905728 - 35905835
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||| ||||| ||||||| ||||||||| ||||||||||||||||| || |||||||||||||||||||||| |||||||||||| || ||||||| ||    
T  35905728 agcttttggacggagggaccattttgatgaacgtctgtaaaattcagggactaaatagatatttcgcaaaattcagggacgaatttgaccgattttttaa 35905827  T
Q  108 aattcaag 115  Q
    ||||||||    
T  35905828 aattcaag 35905835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 53190775 - 53190882
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||| ||||| ||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||  | ||||||| ||    
T  53190775 agcttttggacggagggaccattttgatggacgtctgtaaaattcagggactaaatagatatttcgcaaaattcagggacgaatttggccgattttttaa 53190874  T
Q  108 aattcaag 115  Q
    ||||||||    
T  53190875 aattcaag 53190882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 8 - 132
Target Start/End: Complemental strand, 51684738 - 51684613
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||| ||||| ||||||| ||||||||||||||||||||||||||  || ||||||||||||| |||||||| ||||| ||||||  ||||||||||||    
T  51684738 agcttttggacggagggaccattttgatggacgtctgtaaaattcaaggactaaatagatattttgcaaaattcagggatgaatttggctgatttttgaa 51684639  T
Q  108 aattcaa-gacgaactttagatatta 132  Q
    ||||||| |||||| || ||||||||    
T  51684638 aattcaaggacgaatttgagatatta 51684613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 21348851 - 21348744
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||| ||||| ||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||| | ||||||||||  | ||||||| ||    
T  21348851 agcttttggacggagggaccattttgatggacgtctgtaaaattcagggactaaatagatatttcgcaaaattcaaggacgaatttggccgattttttaa 21348752  T
Q  108 aattcaag 115  Q
    ||||||||    
T  21348751 aattcaag 21348744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 43765253 - 43765158
Alignment:
Q  20 gagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    ||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||  || |||||||| || ||||||||||||||||||    
T  43765253 gagggaccattttgatggacgtctgtaaaattcagaaactaaatagatatttcgcaaaattccggaacgaatttgaccgatttttgaaaattcaag 43765158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 54898565 - 54898458
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||| ||||| ||| ||| ||||||||| ||||||||||||||||| || |||||||||||||||||||||| |||||||||||| || ||||||| ||    
T  54898565 agcttttggacggagagaccattttgatgaacgtctgtaaaattcagggactaaatagatatttcgcaaaattcagggacgaatttgaccgattttttaa 54898466  T
Q  108 aattcaag 115  Q
    ||||||||    
T  54898465 aattcaag 54898458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 137
Target Start/End: Complemental strand, 42279635 - 42279505
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||| ||||| ||||||| |||||||| |||||||||||||||||| || ||||||||||||| ||||||||  | |||||||| | ||||||||||||    
T  42279635 agcttttggacggagggaccattttgatagacgtctgtaaaattcagggactaaatagatattttgcaaaattctgagacgaattgagctgatttttgaa 42279536  T
Q  108 aattcaa-gacgaactttagatattactcat 137  Q
    ||||||| |||||| || || ||||||||||    
T  42279535 aattcaatgacgaatttgaggtattactcat 42279505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 27899097 - 27899204
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||| ||||| ||||||| ||||| ||||||||||||||||||||| || |||||||||||||||||||||| | ||||||||||  | ||||||| ||    
T  27899097 agcttttggacggagggaccatttttatggacgtctgtaaaattcagggactaaatagatatttcgcaaaattcaaggacgaatttggccgattttttaa 27899196  T
Q  108 aattcaag 115  Q
    ||||||||    
T  27899197 aattcaag 27899204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 2226174 - 2226275
Alignment:
Q  14 tggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattca 113  Q
    ||||| ||||||  ||||||||| ||||||||||||||||| || |||||||||||||||||||||| ||||||||||||  | ||||||| ||||||||    
T  2226174 tggacggagggaacattttgatgaacgtctgtaaaattcagggactaaatagatatttcgcaaaattcagggacgaatttggccgattttttaaaattca 2226273  T
Q  114 ag 115  Q
    ||    
T  2226274 ag 2226275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 23293186 - 23293294
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||| ||||| |||||||||||||||||||||| |||||||||||  || |||||||||||||||||||||| | || |||||||  |||||||||  |    
T  23293186 agcttttggacggagggactattttgatggacgtttgtaaaattcatggactaaatagatatttcgcaaaattcaagggcgaatttggctgatttttcga 23293285  T
Q  108 aattcaaga 116  Q
    |||||||||    
T  23293286 aattcaaga 23293294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 17515432 - 17515331
Alignment:
Q  14 tggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattca 113  Q
    ||||||||||||| |||||||||||||| |||||||||||| || |||||||||||||||||||||| || || ||||||  |  |||||| ||||||||    
T  17515432 tggacagagggaccattttgatggacgtttgtaaaattcagggactaaatagatatttcgcaaaattcagcgatgaatttggccaatttttaaaaattca 17515333  T
Q  114 ag 115  Q
    ||    
T  17515332 ag 17515331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 30599934 - 30600019
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaattt 93  Q
    ||||| ||||| ||||||| |||||||| ||||||| |||||||||| || |||||||||||||||||||||| |||||| |||||    
T  30599934 agcttttggacggagggaccattttgatcgacgtctctaaaattcagggactaaatagatatttcgcaaaattcagggacaaattt 30600019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 115
Target Start/End: Complemental strand, 41977879 - 41977771
Alignment:
Q  7 aagcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttga 106  Q
    |||||| ||||| ||||||| ||||||| ||||||||||||||||||| || ||| | |||||||||| ||||| ||||||| ||||  | ||||||| |    
T  41977879 aagcttttggacggagggaccattttgacggacgtctgtaaaattcagggactaatttgatatttcgccaaattcagggacgtatttggccgatttttta 41977780  T
Q  107 aaattcaag 115  Q
    |||||||||    
T  41977779 aaattcaag 41977771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 114
Target Start/End: Complemental strand, 2377137 - 2377051
Alignment:
Q  28 attttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaa 114  Q
    |||||||||||||||||||||||||||||| |||||| || ||| |||||||| ||||||||||||     ||||||||||||||||    
T  2377137 attttgatggacgtctgtaaaattcagagactaaatatattttttgcaaaattcagggacgaatttggtcaatttttgaaaattcaa 2377051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 23291659 - 23291591
Alignment:
Q  47 aaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||  | ||||||| ||||||||||    
T  23291659 aaattcagagactaaatagatatttcgcaaaattcagggacgaatttggccgattttttaaaattcaag 23291591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 46112603 - 46112508
Alignment:
Q  20 gagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    ||||||| ||||||||||||||||||||||||||  || ||||||||||||| |||||||| |   ||||||||  | ||||||| ||||||||||    
T  46112603 gagggaccattttgatggacgtctgtaaaattcatggactaaatagatattttgcaaaattcaataacgaatttggccgattttttaaaattcaag 46112508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 2660334 - 2660233
Alignment:
Q  14 tggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattca 113  Q
    ||||| ||||||| | ||||||||||||||||||||||||  || ||| | |||||||||||||||| ||||||||| ||    ||||||| ||||||||    
T  2660334 tggacggagggacgaatttgatggacgtctgtaaaattcaaggactaatttgatatttcgcaaaattcagggacgaaattggtcgatttttcaaaattca 2660235  T
Q  114 ag 115  Q
    ||    
T  2660234 ag 2660233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 23774268 - 23774195
Alignment:
Q  20 gagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaattt 93  Q
    |||||||| ||||||||||||||||  |||||||| || ||||| ||||||||||| |||| ||||||||||||    
T  23774268 gagggacttttttgatggacgtctgacaaattcagggactaaattgatatttcgcataattgagggacgaattt 23774195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 48830822 - 48830887
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcg 73  Q
    ||||| ||||| ||||||| ||||||||||||||| |||||||||| ||| |||||||||||||||    
T  48830822 agcttttggacggagggaccattttgatggacgtccgtaaaattcaaagactaaatagatatttcg 48830887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 42282485 - 42282541
Alignment:
Q  59 taaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||||||||||||||||| ||  |||||||| |||||||||||||||||||||    
T  42282485 taaatagatatttcgcaaaattcagaaacgaatttgactgatttttgaaaattcaag 42282541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 46197835 - 46197763
Alignment:
Q  21 agggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaattt 93  Q
    |||||| ||||| |||||||||||||||||||||  | ||||||||||||| |||||||| || |||||||||    
T  46197835 agggaccattttaatggacgtctgtaaaattcaggaactaaatagatattttgcaaaattcagagacgaattt 46197763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 51686406 - 51686458
Alignment:
Q  59 taaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaatt 111  Q
    |||||| ||||||||||||||||||||||||||||  ||||||||||||||||    
T  51686406 taaataaatatttcgcaaaatttagggacgaatttggctgatttttgaaaatt 51686458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 3152256 - 3152337
Alignment:
Q  30 tttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaatt 111  Q
    ||||||||||||||||||||||||| || ||| | |||||||||||||||| ||||| ||| ||  | ||||||| ||||||    
T  3152256 tttgatggacgtctgtaaaattcagggactaatttgatatttcgcaaaattcagggatgaaattggccgatttttcaaaatt 3152337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 19987616 - 19987692
Alignment:
Q  14 tggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaa 90  Q
    ||||| ||||||||  |||||||||||| ||||||||| || || ||| | |||||||||||||||| |||||||||    
T  19987616 tggacggagggactgatttgatggacgtgtgtaaaatttagggactaatttgatatttcgcaaaattcagggacgaa 19987692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 33852672 - 33852744
Alignment:
Q  14 tggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttaggga 86  Q
    |||||||||||||  ||||||||||||||||  ||||||||| | ||||| ||||||||||| |||| |||||    
T  33852672 tggacagagggacctttttgatggacgtctgataaattcagaaattaaattgatatttcgcataattgaggga 33852744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 30598413 - 30598358
Alignment:
Q  60 aaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||| |||||||||||||| |||||| ||||| || ||||||||||||||||||    
T  30598413 aaatagctatttcgcaaaattcagggacaaatttgaccgatttttgaaaattcaag 30598358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 611234 - 611290
Alignment:
Q  59 taaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    ||||||| ||||||| |||||| ||||||||||||  ||||||||| ||||||||||    
T  611234 taaatagctatttcgaaaaattcagggacgaatttggctgattttttaaaattcaag 611290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 3150341 - 3150273
Alignment:
Q  47 aaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||| || ||| | |||||||||||||||| ||||||||| || || ||||||| ||||||||||    
T  3150341 aaattcagggactaatttgatatttcgcaaaattcagggacgaaattgaccgatttttcaaaattcaag 3150273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 7884895 - 7884935
Alignment:
Q  14 tggacagagggactattttgatggacgtctgtaaaattcag 54  Q
    ||||| ||||||| |||||||||||||||||||||||||||    
T  7884895 tggacggagggaccattttgatggacgtctgtaaaattcag 7884935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 44794329 - 44794257
Alignment:
Q  14 tggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttaggga 86  Q
    ||||| ||||||| | |||||||||| |||| ||||||||| || ||| | |||||||||||||||| |||||    
T  44794329 tggacggagggacgaatttgatggacttctgcaaaattcagggactaatttgatatttcgcaaaattcaggga 44794257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 53187831 - 53187763
Alignment:
Q  47 aaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||| || ||| | |||||||||||||||| ||||||||| || || ||||||| ||||||||||    
T  53187831 aaattcagggactaatttgatatttcgcaaaattcagggacgaaattgaccgatttttcaaaattcaag 53187763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 24846559 - 24846614
Alignment:
Q  60 aaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    ||||| ||||||||||||||||  ||||||||||| ||||||||| ||||| ||||    
T  24846559 aaatatatatttcgcaaaatttgaggacgaatttacctgatttttaaaaatccaag 24846614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 93
Target Start/End: Original strand, 40508913 - 40508992
Alignment:
Q  14 tggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaattt 93  Q
    ||||| |||||||  ||||||||||||||||  |||||||  || ||| | ||||||||||| |||| ||||||||||||    
T  40508913 tggacggagggacatttttgatggacgtctgacaaattcaaggattaagttgatatttcgcataattgagggacgaattt 40508992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 46310436 - 46310503
Alignment:
Q  47 aaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaa 114  Q
    |||||||| || ||| | |||||||||||||||| ||||||||| || || ||||||| |||||||||    
T  46310436 aaattcagggactaatttgatatttcgcaaaattcagggacgaaattgaccgatttttcaaaattcaa 46310503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 48633999 - 48633920
Alignment:
Q  14 tggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaattt 93  Q
    ||||| |||||||  ||||||||||||||||  |||||||| || ||| | ||||||||||| |||| | ||||||||||    
T  48633999 tggacggagggacctttttgatggacgtctgacaaattcagggactaagttgatatttcgcataattgatggacgaattt 48633920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 44276212 - 44276257
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattca 53  Q
    ||||| ||||| ||||||| |||||||||| |||||||||||||||    
T  44276212 agcttttggacggagggaccattttgatgggcgtctgtaaaattca 44276257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 139
Target Start/End: Original strand, 54412559 - 54412640
Alignment:
Q  59 taaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattca-agacgaactttagatattactcattt 139  Q
    ||||||||||| |||||||||| | |||||||||| ||  |||||| ||||||||  |||||| || |||||||| ||||||    
T  54412559 taaatagatatctcgcaaaattcaaggacgaatttgaccaattttttaaaattcacggacgaatttgagatattaatcattt 54412640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 17516993 - 17517041
Alignment:
Q  67 tatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||||||||| | | |||||||| || ||||||||||||||||||    
T  17516993 tatttcgcaaaattcatgaacgaatttgaccgatttttgaaaattcaag 17517041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 38193510 - 38193578
Alignment:
Q  47 aaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||| || ||| | |||||||||||||||| ||||||||| ||  | ||||||| ||||||||||    
T  38193510 aaattcagggactaatttgatatttcgcaaaattcagggacgaaattggccgatttttcaaaattcaag 38193578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 41979352 - 41979420
Alignment:
Q  47 aaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||| || ||| | |||||||||||||||| ||||||||| ||  | ||||||| ||||||||||    
T  41979352 aaattcagggactaatttgatatttcgcaaaattcagggacgaaattggccgatttttcaaaattcaag 41979420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 139
Target Start/End: Complemental strand, 44268057 - 44267977
Alignment:
Q  60 aaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaa-gacgaactttagatattactcattt 139  Q
    |||||| |||||||||||||| || || ||||||  | ||||||||||||||||| |||||| || || ||||| ||||||    
T  44268057 aaatagctatttcgcaaaattcagagatgaatttggccgatttttgaaaattcaaggacgaatttgaggtattagtcattt 44267977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 46308896 - 46308828
Alignment:
Q  47 aaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||| || ||| | |||||||||||||||| ||||||||| ||  | ||||||| ||||||||||    
T  46308896 aaattcagggactaatttgatatttcgcaaaattcagggacgaaattggccgatttttcaaaattcaag 46308828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 46611303 - 46611371
Alignment:
Q  47 aaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||| || ||| | |||||||||||||||| ||||||||| || ||  |||||| ||||||||||    
T  46611303 aaattcagggactaatttgatatttcgcaaaattcagggacgaaattgacaaatttttcaaaattcaag 46611371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 48829433 - 48829377
Alignment:
Q  59 taaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||||||||||||||||| ||| |  |||||  |||| |||||||||||||||    
T  48829433 taaatagatatttcgcaaaattcaggaataaatttggctgaattttgaaaattcaag 48829377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 53094273 - 53094341
Alignment:
Q  47 aaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||| || ||| | |||||||||||||||| ||||||||| ||  | ||||||| ||||||||||    
T  53094273 aaattcagggactaatttgatatttcgcaaaattcagggacgaaattggccgatttttcaaaattcaag 53094341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1454 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold1454
Description:

Target: scaffold1454; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 1391 - 1284
Alignment:
Q  8 agcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaa 107  Q
    ||||| ||||| ||||||| ||||||||||||||||||||||||||| || ||||||||||||||  |||||| | |||||||||||||  |||||| ||    
T  1391 agcttttggacggagggaccattttgatggacgtctgtaaaattcagggactaaatagatatttcataaaattcatggacgaatttaaccaattttttaa 1292  T
Q  108 aattcaag 115  Q
    ||||||||    
T  1291 aattcaag 1284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 3416 - 3315
Alignment:
Q  14 tggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattca 113  Q
    ||||| ||||||| | ||||||||||||||||||||||||| || ||| | |||||||||||||||| |||||| || ||  | ||||||| ||||||||    
T  3416 tggacggagggacgaatttgatggacgtctgtaaaattcagggactaatttgatatttcgcaaaattcagggacaaaattggccgatttttcaaaattca 3317  T
Q  114 ag 115  Q
    ||    
T  3316 ag 3315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 4588 - 4487
Alignment:
Q  14 tggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattca 113  Q
    ||||| ||||||| | ||||||||||||||||||||||||| || ||| | |||||||||||||||| |||||| || ||  | ||||||| ||||||||    
T  4588 tggacggagggacgaatttgatggacgtctgtaaaattcagggactaatttgatatttcgcaaaattcagggacaaaattggccgatttttcaaaattca 4489  T
Q  114 ag 115  Q
    ||    
T  4488 ag 4487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 14343 - 14411
Alignment:
Q  47 aaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||| || ||| | |||||||||||||||| ||||||||| ||  | ||||||| ||||||||||    
T  14343 aaattcagggactaatttgatatttcgcaaaattcagggacgaaatttgccgatttttcaaaattcaag 14411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 436341 - 436285
Alignment:
Q  60 aaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaaga 116  Q
    ||||||||||||||||||||||| ||| ||||||  |||||||||||||||||||||    
T  436341 aaatagatatttcgcaaaatttatggatgaatttggctgatttttgaaaattcaaga 436285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 115
Target Start/End: Complemental strand, 8389 - 8283
Alignment:
Q  7 aagcttatggacagagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttga 106  Q
    |||||| ||||| || | || |||||||||||||| |  ||||||||| || ||||||||||||| |||||||| | | ||||||||  |  |||||| |    
T  8389 aagcttttggacggatgtaccattttgatggacgtat--aaaattcagggactaaatagatattttgcaaaattcaagaacgaatttggccaatttttta 8292  T
Q  107 aaattcaag 115  Q
    |||||||||    
T  8291 aaattcaag 8283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 6642 - 6715
Alignment:
Q  20 gagggactattttgatggacgtctgtaaaattcagagaataaatagatatttcgcaaaatttagggacgaattt 93  Q
    |||||||  |||||||||| |||||  |||||||| || ||||| |||||||| || |||| ||||||||||||    
T  6642 gagggacctttttgatggaggtctgataaattcagggattaaattgatatttcacataattgagggacgaattt 6715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 1555 - 1623
Alignment:
Q  47 aaattcagagaataaatagatatttcgcaaaatttagggacgaatttaactgatttttgaaaattcaag 115  Q
    |||||||| || ||||| | |||||  ||||||| |||||||||||| || ||||||| ||||||||||    
T  1555 aaattcagggactaaattgctatttttcaaaattcagggacgaatttgaccgattttttaaaattcaag 1623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University