View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15594_high_8 (Length: 233)
Name: NF15594_high_8
Description: NF15594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15594_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 35873403 - 35873628
Alignment:
| Q |
1 |
aataaaaagaaaaactgaattatggtgaaaatttgctggaagctcaaattgtagatatgctgaaagagaaagtaagtttgactgaagttgttatattgac |
100 |
Q |
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| T |
35873403 |
aataaaaagaaaaactgaattatggtgaaaatttgctggaagctcaaattgtagatatgctgaaagagaaagtaagtttgactgaagttgttgtattgac |
35873502 |
T |
|
| Q |
101 |
ttcagtgtgatctgagatgagcaactcaaaatgnnnnnnntaaccaaacaaacagtgtgaatggtgtaatgaatatgatatgggtatctgtagtgttgtc |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35873503 |
ttcagtgtgatctgagatgagcaactcaaaatgaaaaaaataaccaaacaaacagtgtgaatggtgtaatgaatatgatatgggtatctgtagtgttgtc |
35873602 |
T |
|
| Q |
201 |
tgtaattatttgaccggtttcatttc |
226 |
Q |
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||||||||||||||||||||| |||| |
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| T |
35873603 |
tgtaattatttgaccggtttcttttc |
35873628 |
T |
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