View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15594_low_5 (Length: 386)
Name: NF15594_low_5
Description: NF15594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15594_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 18 - 343
Target Start/End: Complemental strand, 38877108 - 38876792
Alignment:
| Q |
18 |
atttactacctactagacaaccataaaatttcatgtcaagaaaactctatgcaactcgcattggatatatagtgttcatctaaaactcatcaatttatta |
117 |
Q |
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| T |
38877108 |
atttactacctactagacaaccataaaatttcatgttaagaaaactctatgcaactcccattggatataga-----cat-----agtaatcaatttatta |
38877019 |
T |
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| Q |
118 |
taattgatagatgatggattatatttg-----caatatatagttgttgagcttaattaacttgtgtttaataatttgaatgacatgcagtgacgacttga |
212 |
Q |
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| T |
38877018 |
tacttgatagatgatggattatatttgatttgcaatatatagttgttgaccttaa----cttgtgtttaataatttgaatgacatgcagtgaggacctga |
38876923 |
T |
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| Q |
213 |
gagctctatttgaaagagcaaaagcaaaactgagatttaatcttgaaagcatgaatgaaccatggttgattaaggatataacaagagcatgggaaagttg |
312 |
Q |
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| T |
38876922 |
gagctctatttgaaagagcaaaagcaaagctgagatttaatcttgaaagcatgaacgaaacatggttgattaaggatataacaagagcatgggaaagttg |
38876823 |
T |
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| Q |
313 |
tgttaaagatgcaattcttgattatgaacag |
343 |
Q |
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| T |
38876822 |
tgttaaagatgcaattcttgattatgaacag |
38876792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 134 - 364
Target Start/End: Complemental strand, 16628168 - 16627942
Alignment:
| Q |
134 |
gattatatttgcaatatatagttgttgagcttaattaacttgtgtttaataatttgaatgacatgcagtgacgacttgagagctctatttgaaagagcaa |
233 |
Q |
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| T |
16628168 |
gattatatttgcaatatataattgttgaccataata----tgtgtttcataatttgaattacatgcagtgaggactttagagatttgtttgagagagcaa |
16628073 |
T |
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| Q |
234 |
aagcaaaactgagatttaatcttgaaagcatgaatgaaccatggttgattaaggatataacaagagcatgggaaagttgtgttaaagatgcaattcttga |
333 |
Q |
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| T |
16628072 |
aaggaaagctgagagttaatctggaaagcatgaagcaaccatggttgattaaggatgtagctagagcatgggaaggttgtgctagagaagcaatccttga |
16627973 |
T |
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| Q |
334 |
ttatgaacaggctattggtggggggacattt |
364 |
Q |
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| T |
16627972 |
atatgcacatgttaatggtggtggaacattt |
16627942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 134 - 364
Target Start/End: Complemental strand, 16637049 - 16636823
Alignment:
| Q |
134 |
gattatatttgcaatatatagttgttgagcttaattaacttgtgtttaataatttgaatgacatgcagtgacgacttgagagctctatttgaaagagcaa |
233 |
Q |
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| T |
16637049 |
gattatatttgcaatatataattgttgaccataata----tgtgtttcataatttgaattacatgcagtgaggactttagagatttgtttgagagagcaa |
16636954 |
T |
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| Q |
234 |
aagcaaaactgagatttaatcttgaaagcatgaatgaaccatggttgattaaggatataacaagagcatgggaaagttgtgttaaagatgcaattcttga |
333 |
Q |
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| T |
16636953 |
aaggaaagctgagagttaatctggaaagcatgaagcaaccatggttgattaaggatgtagctagagcatgggaaggttgtgctagagaagcaatccttga |
16636854 |
T |
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| Q |
334 |
ttatgaacaggctattggtggggggacattt |
364 |
Q |
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| T |
16636853 |
atatgcacatgttaatggtggtggaacattt |
16636823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 116 - 364
Target Start/End: Complemental strand, 16616087 - 16615844
Alignment:
| Q |
116 |
tataattgatagatgatggattatatttgcaatatatagttgttgagcttaattaacttgtgtttaataatttgaatgacatgcagtgacgacttgagag |
215 |
Q |
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| T |
16616087 |
tatacttgattgatgatggacaatatttgcaatgtatagctgttgaccataatt----tgtgtttcataatttgatt-acatgcagtgatgacctgagag |
16615993 |
T |
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| Q |
216 |
ctctatttgaaagagcaaaagcaaaactgagatttaatcttgaaagcatgaatgaaccatggttgattaaggatataacaagagcatgggaaagttgtgt |
315 |
Q |
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| T |
16615992 |
ctctttttgagaaagcaaaagcaaagctgagacttaaactgcaaagcacgaagcaaccatggttgattaaggatgtagctagagcatgggaaggttgtgc |
16615893 |
T |
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| Q |
316 |
taaagatgcaattcttgattatgaacaggctattggtggggggacattt |
364 |
Q |
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| T |
16615892 |
tagagaagcaatccttgaatatgcacatgctaatggtggtggaacattt |
16615844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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