View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15594_low_6 (Length: 355)
Name: NF15594_low_6
Description: NF15594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15594_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 14812582 - 14812918
Alignment:
| Q |
1 |
catcatcaccttgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtga |
100 |
Q |
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| T |
14812582 |
catcatcaccttgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtga |
14812681 |
T |
|
| Q |
101 |
ttcaagttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatcatatttatctttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14812682 |
ttcaagttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatcatatttatctttca |
14812781 |
T |
|
| Q |
201 |
tgtccaaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtgtctaacatagagattcactacttt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||| |
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| T |
14812782 |
tgtccaaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtttctaac--agagattcgctacttt |
14812879 |
T |
|
| Q |
301 |
ctgtattgtaaggagtccattaggatatgtagagaaaat |
339 |
Q |
| |
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| T |
14812880 |
ctgtattgtaaagagtccattaggatatgtagagaaaat |
14812918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 15259577 - 15259913
Alignment:
| Q |
1 |
catcatcaccttgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15259577 |
catcatcaccttgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtga |
15259676 |
T |
|
| Q |
101 |
ttcaagttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatcatatttatctttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15259677 |
ttcaagttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatcatatttatctttca |
15259776 |
T |
|
| Q |
201 |
tgtccaaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtgtctaacatagagattcactacttt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||| |
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| T |
15259777 |
tgtccaaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtttctaac--agagattcgctacttt |
15259874 |
T |
|
| Q |
301 |
ctgtattgtaaggagtccattaggatatgtagagaaaat |
339 |
Q |
| |
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| T |
15259875 |
ctgtattgtaaagagtccattaggatatgtagagaaaat |
15259913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 17521598 - 17521262
Alignment:
| Q |
1 |
catcatcaccttgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtga |
100 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17521598 |
catcaccaccttgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtga |
17521499 |
T |
|
| Q |
101 |
ttcaagttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatcatatttatctttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17521498 |
ttcaagttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatcatatttatctttca |
17521399 |
T |
|
| Q |
201 |
tgtccaaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtgtctaacatagagattcactacttt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||| |
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| T |
17521398 |
tgtccaaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtttctaac--agagattcgctacttt |
17521301 |
T |
|
| Q |
301 |
ctgtattgtaaggagtccattaggatatgtagagaaaat |
339 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||| |
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| T |
17521300 |
ctgtattgtaaagagtccattaggatatgtagagaaaat |
17521262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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