View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15594_low_7 (Length: 313)
Name: NF15594_low_7
Description: NF15594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15594_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 303
Target Start/End: Original strand, 35787137 - 35787412
Alignment:
| Q |
19 |
atcaggtccacctttacctttgcatttacggttacttttattgttgttggtgttgttggtagtgttactactgctgctgttattactgttgttatcagtg |
118 |
Q |
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| T |
35787137 |
atcaggtccacctttacctttgcatttacggttacttttattgtt---------gttggtagtgttactgctgctgctgttattactgttgttatcagtg |
35787227 |
T |
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| Q |
119 |
ctgttgttagatgtttcacttggagtggtagtaacaacggtgttggcggtgggtttggtttcttgaacatgatgaagaggtgaatccatttttaaaagga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35787228 |
ctgttgttagatgtttcacttggagtggtagtaacaacggtgttggcggtgggtttggtttcttgaacatgatgaagaggtgaatccatttttaaaagga |
35787327 |
T |
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| Q |
219 |
aagagtgtgtgagagatgaatgaaaaaagaaaagatggagagtgactacttggttacctcgttcagtgttattgtttcttctgtg |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35787328 |
aagagtgtgtgagagatgaatgaaaaaagaaaagatggagagtgactacttggttacctcgttcagtgttattgtttcttctgtg |
35787412 |
T |
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