View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15595_high_3 (Length: 414)
Name: NF15595_high_3
Description: NF15595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15595_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 13 - 354
Target Start/End: Complemental strand, 35344464 - 35344129
Alignment:
| Q |
13 |
aatatcaaggtaccagatgacgatgaacacggaacaatatctgctacattagagaaacaattcttcacggaagtcacgcttttatctcgcctccaccatc |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35344464 |
aatatcaaggtaccagatgacgatgaacacggaacaatagctgctacattagacaaacaattcttcacggaagtcacgcttttatctcgcctccaccatc |
35344365 |
T |
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| Q |
113 |
caaatgttcttaaggtaattagattcaactgtttctcttcnnnnnnnnnnnnnnnnacttatttaatggaatataaatatataaggaaagttaggtaaac |
212 |
Q |
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| T |
35344364 |
caaatgttcttaaggtaattagattcaactgtttctcttc-ttttgtatagtttttatttatttaatggaatataaatatataagaaaagttaggtaaac |
35344266 |
T |
|
| Q |
213 |
catacagaaaattagggatactattttctacatcctaatttgttgtatactttggtctaattatattatgcagttcatacatacttcacatcatg--tag |
310 |
Q |
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||||||||||||||||||||||||||||||||||||| | | | | ||||||||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
35344265 |
catacagaaaattagggatactattttctacatccta-----tgggaaa--ttggtctaattatattatgcacttcatacatacttcacatcatgtatag |
35344173 |
T |
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| Q |
311 |
agaaatttattattacaaggaaggtgttttatacatgatttctc |
354 |
Q |
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| T |
35344172 |
agaaatttagtattacaaggaaggtgttttatacatgatttctc |
35344129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 13 - 354
Target Start/End: Original strand, 35361492 - 35361827
Alignment:
| Q |
13 |
aatatcaaggtaccagatgacgatgaacacggaacaatatctgctacattagagaaacaattcttcacggaagtcacgcttttatctcgcctccaccatc |
112 |
Q |
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| T |
35361492 |
aatatcaaggtaccagatgacgatgaacacggaacaatagctgctacattagacaaacaattcttcacggaagtcacgcttttatctcgcctccaccatc |
35361591 |
T |
|
| Q |
113 |
caaatgttcttaaggtaattagattcaactgtttctcttcnnnnnnnnnnnnnnnnacttatttaatggaatataaatatataaggaaagttaggtaaac |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35361592 |
caaatgttcttaaggtaattagattcaactgtttctcttc-ttttgtatagtttttatttatttaatggaatataaatatataagtaaagttaggtaaac |
35361690 |
T |
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| Q |
213 |
catacagaaaattagggatactattttctacatcctaatttgttgtatactttggtctaattatattatgcagttcatacatacttcacatcatg--tag |
310 |
Q |
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||||||||||||||||||||||||||||||||||||| | | | | ||||||||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
35361691 |
catacagaaaattagggatactattttctacatccta-----tgggaaa--ttggtctaattatattatgcacttcatacatacttcacatcatgtatag |
35361783 |
T |
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| Q |
311 |
agaaatttattattacaaggaaggtgttttatacatgatttctc |
354 |
Q |
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| T |
35361784 |
agaaatttagtattacaaggaaggtgttttatacatgatttctc |
35361827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 16 - 131
Target Start/End: Original strand, 35354648 - 35354763
Alignment:
| Q |
16 |
atcaaggtaccagatgacgatgaacacggaacaatatctgctacattagagaaacaattcttcacggaagtcacgcttttatctcgcctccaccatccaa |
115 |
Q |
| |
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|||| |||||| ||||| || ||| |||||||||| ||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||| || |
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| T |
35354648 |
atcagggtaccggatgatgacgaaaacggaacaatggctgctacattagagaaacaattcatcacagaagtcacacttttatctcgcctccaccatcaaa |
35354747 |
T |
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| Q |
116 |
atgttcttaaggtaat |
131 |
Q |
| |
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|||||||||||||||| |
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| T |
35354748 |
atgttcttaaggtaat |
35354763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 292 - 354
Target Start/End: Original strand, 35358026 - 35358088
Alignment:
| Q |
292 |
catacttcacatcatgtagagaaatttattattacaaggaaggtgttttatacatgatttctc |
354 |
Q |
| |
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||||||||||||||||||| |||||||| |||||||| |||||||||||||| | |||||||| |
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| T |
35358026 |
catacttcacatcatgtagggaaatttactattacaaagaaggtgttttataaacgatttctc |
35358088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 354
Target Start/End: Original strand, 35355123 - 35355185
Alignment:
| Q |
292 |
catacttcacatcatgtagagaaatttattattacaaggaaggtgttttatacatgatttctc |
354 |
Q |
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|||| |||||||||||| ||||||| || ||| |||||||| || |||||||||| ||||||| |
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| T |
35355123 |
catatttcacatcatgttgagaaatctactataacaaggaatgtattttatacataatttctc |
35355185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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