View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15595_high_5 (Length: 373)
Name: NF15595_high_5
Description: NF15595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15595_high_5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 33048822 - 33048449
Alignment:
| Q |
1 |
ccaatggcatggggatgccagcgtaggccaacctagaggattactgcataggtctaaacgccaatcaattttaaccaaacaaaaataatcaactaaacca |
100 |
Q |
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| T |
33048822 |
ccaatggcatggggatgccagcgtaggccaacctagaggattactgcataggtctaaatgccaatcaattttaaccaaacaaaaataatcaactaaacca |
33048723 |
T |
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| Q |
101 |
cgagccctaagtactagtctgagcagtctcagcgtaagaagatctcctggagagaggtttgttcaccaagcatgattttcagtttagttgctttgatggg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33048722 |
cgagccctaagtactagtctgagcagtctcagcgtaagaagatctcctggagagaggtttgttcaccaagcatgattttcagtttagttgctttgatggg |
33048623 |
T |
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| Q |
201 |
aataaaaatccacttctttggagaagataagaa-gcattcccttaatccttgatcattaaatttgtaaatgtagtaaagtgatgttatttatttactgac |
299 |
Q |
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|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
33048622 |
aataaaaacccacttctttggagaagataagaattcattcccttaatccttgatcattaaatttgtaaatgtagtaaagtgatgttatttatttaccgac |
33048523 |
T |
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| Q |
300 |
ggtgctaattttcaacttgattggtatagaagcttagaaaacaggacaaggaaaagaacataaatatagttgga |
373 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33048522 |
ggtgctaattttcaacttgattggtatagaagcttagaaaacaggacaaggaaaagaacataaatatagttgga |
33048449 |
T |
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