View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15595_low_1 (Length: 687)
Name: NF15595_low_1
Description: NF15595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15595_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 612; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 18 - 676
Target Start/End: Original strand, 28530893 - 28531554
Alignment:
| Q |
18 |
acatggataagttattcttcaaatttgtgaaatagaaattcagttcaattagtcatttttcaaattatgtaccacaattttgaggtttctatgcccgctt |
117 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
28530893 |
acatggataatttattcttcaaatttgtgaaatagaaattcagttcaattagtcatttttcaaattatgtaccacaattttgaggtttctatgcccgttt |
28530992 |
T |
|
| Q |
118 |
tgat---gcagcaagtcaatatattggtttttcattggttttgatatatgtttactatacatacatgtagatggagggactgaattgatcgatgacgtat |
214 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28530993 |
tgataatgcagcaagtcaatatattggtttttcattggttttgatatatgtttactatacatccatgtagatggagggactgaattgatcgatgacgtat |
28531092 |
T |
|
| Q |
215 |
tttaatttacatgactaatttgctatttcgtaaatttgatggactaaattattcgtcgcttacaatttcaaggaccaaaatgctgatttatctgatagtt |
314 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
28531093 |
tttaatttacatgactaatttgctatttcataaatttgatggactaaattattcgtcgcctacaatttcaaggaccaaaatgctgatttatctgatagtt |
28531192 |
T |
|
| Q |
315 |
tcacaaaatgttgaaggaactgtcgttgtttttcctacctaattggataaattgtattataatcttatgatttctgatcttgtagagaacatgattggaa |
414 |
Q |
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| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28531193 |
ttacaaaatgttgaaggaaatgtcgttgtttttcctacctaattggataaattgtattataatcttatgatttctgatcttgtagagaacatgattggaa |
28531292 |
T |
|
| Q |
415 |
aaggtggtcatgcagaagtgtacaaaggacgcttacctgatggaacggttgtagcagtaaagaggctaatgaacaatgagaaggaagctggagacagagc |
514 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28531293 |
aaggtggtcatgcagaagtgtacaaaggacgcttacctgatggaatggttgtagcagtaaagaggctaatgaacaatgagaaggaagctggagacagagc |
28531392 |
T |
|
| Q |
515 |
tgctggtgatttcttgtcggagcttgggattattgctcacattaaccacccaaatgcaacacgtctcatcggttttggaattgatcgtggcctctacttt |
614 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
28531393 |
tgctggtgatttcttgtcggagcttgggattattgctcacattaaccacccaaatgcaacgcgtctcatcggttttggaattgatcgtggcctctacttt |
28531492 |
T |
|
| Q |
615 |
gttcttcaattcgccccacatggaagcctttcctctttgctctttggtgcattgcttcatct |
676 |
Q |
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| T |
28531493 |
gttcttcaattcgccccacatggaagcctttcctctttgctctttggtgcattgcttcatct |
28531554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 239 - 304
Target Start/End: Complemental strand, 11567630 - 11567565
Alignment:
| Q |
239 |
atttcgtaaatttgatggactaaattattcgtcgcttacaatttcaaggaccaaaatgctgattta |
304 |
Q |
| |
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|||| |||||||||| |||||||||| || | ||||||||||||||||| |||||||||||||| |
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|
| T |
11567630 |
attttgtaaatttgagggactaaattgaccgacccttacaatttcaaggactaaaatgctgattta |
11567565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 264
Target Start/End: Original strand, 11567810 - 11567843
Alignment:
| Q |
231 |
aatttgctatttcgtaaatttgatggactaaatt |
264 |
Q |
| |
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||||||||||||||||||||||| |||||||||| |
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| T |
11567810 |
aatttgctatttcgtaaatttgagggactaaatt |
11567843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 397 - 487
Target Start/End: Original strand, 13672680 - 13672770
Alignment:
| Q |
397 |
tagagaacatgattggaaaaggtggtcatgcagaagtgtacaaaggacgcttacctgatggaacggttgtagcagtaaagaggctaatgaa |
487 |
Q |
| |
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|||||||| |||||||||||||||||||||| ||||| |||||||||| |||| | ||||| ||||| ||||||||||| |||||||| |
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| T |
13672680 |
tagagaacttgattggaaaaggtggtcatgctgaagtatacaaaggacacttatcagatggtcaagttgtcgcagtaaagagactaatgaa |
13672770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 264
Target Start/End: Complemental strand, 32810938 - 32810903
Alignment:
| Q |
229 |
ctaatttgctatttcgtaaatttgatggactaaatt |
264 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |
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| T |
32810938 |
ctaatttgctatttcgtaaatttgagggactaaatt |
32810903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 304
Target Start/End: Original strand, 34590053 - 34590142
Alignment:
| Q |
215 |
tttaatttacatgactaatttgctatttcgtaaatttgatggactaaattattcgtcgcttacaatttcaaggaccaaaatgctgattta |
304 |
Q |
| |
|
||||||||| | |||| ||||| ||||| |||||||| | | ||||||||| | | | |||||||| ||||||||| ||||||||||||| |
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| T |
34590053 |
tttaatttaaaggactgatttgttattttgtaaatttaaggaactaaattacttgactcttacaatatcaaggaccgaaatgctgattta |
34590142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 273 - 304
Target Start/End: Original strand, 34618366 - 34618397
Alignment:
| Q |
273 |
cttacaatttcaaggaccaaaatgctgattta |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
34618366 |
cttacaatttcaaggaccaaaatgctgattta |
34618397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 273 - 304
Target Start/End: Original strand, 34745803 - 34745834
Alignment:
| Q |
273 |
cttacaatttcaaggaccaaaatgctgattta |
304 |
Q |
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|
|||||||||||||||||||||||||||||||| |
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|
| T |
34745803 |
cttacaatttcaaggaccaaaatgctgattta |
34745834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 264
Target Start/End: Original strand, 5086065 - 5086114
Alignment:
| Q |
215 |
tttaatttacatgactaatttgctatttcgtaaatttgatggactaaatt |
264 |
Q |
| |
|
||||||||| | |||||||||||||||| |||||||||| |||||||||| |
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| T |
5086065 |
tttaatttaaaggactaatttgctattttgtaaatttgagggactaaatt |
5086114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 406 - 442
Target Start/End: Complemental strand, 40114799 - 40114763
Alignment:
| Q |
406 |
tgattggaaaaggtggtcatgcagaagtgtacaaagg |
442 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||| |
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| T |
40114799 |
tgattggaaaaggtggttatgctgaagtgtacaaagg |
40114763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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