View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15595_low_10 (Length: 311)

Name: NF15595_low_10
Description: NF15595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15595_low_10
NF15595_low_10
[»] chr4 (8 HSPs)
chr4 (1-294)||(16066353-16066657)
chr4 (165-271)||(16189706-16189813)
chr4 (214-266)||(32915610-32915662)
chr4 (164-221)||(4383426-4383484)
chr4 (201-251)||(8402733-8402783)
chr4 (162-199)||(22234818-22234855)
chr4 (203-239)||(20950420-20950456)
chr4 (214-242)||(25742913-25742941)
[»] chr6 (19 HSPs)
chr6 (163-263)||(7377984-7378098)
chr6 (211-271)||(34073348-34073409)
chr6 (211-274)||(7265594-7265658)
chr6 (166-251)||(9025448-9025535)
chr6 (211-251)||(9617452-9617492)
chr6 (211-251)||(9629401-9629441)
chr6 (215-270)||(30866149-30866205)
chr6 (201-274)||(9658873-9658947)
chr6 (201-274)||(19040346-19040420)
chr6 (163-197)||(21424744-21424778)
chr6 (201-239)||(30851630-30851668)
chr6 (206-274)||(20371106-20371175)
chr6 (205-242)||(33419200-33419237)
chr6 (211-251)||(7996379-7996419)
chr6 (211-251)||(8022382-8022422)
chr6 (216-263)||(24832593-24832641)
chr6 (201-249)||(26314625-26314673)
chr6 (211-262)||(26562695-26562747)
chr6 (201-241)||(33001280-33001320)
[»] chr1 (13 HSPs)
chr1 (165-274)||(29163323-29163446)
chr1 (211-274)||(6427344-6427408)
chr1 (155-241)||(13436486-13436570)
chr1 (211-263)||(34371719-34371771)
chr1 (211-254)||(30749855-30749898)
chr1 (211-254)||(30771306-30771349)
chr1 (162-241)||(22881566-22881647)
chr1 (211-249)||(52903269-52903307)
chr1 (211-263)||(38503325-38503378)
chr1 (201-241)||(5898257-5898297)
chr1 (164-200)||(12919027-12919063)
chr1 (211-274)||(36878455-36878519)
chr1 (211-251)||(44482248-44482288)
[»] chr5 (13 HSPs)
chr5 (201-259)||(42029762-42029820)
chr5 (212-251)||(23012410-23012449)
chr5 (205-251)||(17925167-17925213)
chr5 (203-241)||(18145296-18145334)
chr5 (204-254)||(32426863-32426913)
chr5 (162-241)||(6247650-6247730)
chr5 (211-251)||(15086489-15086529)
chr5 (211-251)||(16203796-16203836)
chr5 (201-268)||(30502379-30502447)
chr5 (201-268)||(30542722-30542790)
chr5 (211-251)||(32630736-32630776)
chr5 (214-254)||(39758287-39758327)
chr5 (201-269)||(42126311-42126378)
[»] chr8 (9 HSPs)
chr8 (210-251)||(12606829-12606870)
chr8 (201-251)||(14134717-14134767)
chr8 (212-254)||(18964192-18964234)
chr8 (201-240)||(8293854-8293893)
chr8 (162-292)||(27213522-27213645)
chr8 (164-251)||(31236532-31236618)
chr8 (210-248)||(28384994-28385032)
chr8 (211-252)||(26902176-26902217)
chr8 (211-251)||(4786339-4786379)
[»] chr3 (8 HSPs)
chr3 (211-274)||(8039836-8039900)
chr3 (176-254)||(13414484-13414559)
chr3 (211-254)||(35222953-35222996)
chr3 (211-274)||(8383251-8383315)
chr3 (205-251)||(48202264-48202310)
chr3 (212-240)||(24633403-24633431)
chr3 (211-251)||(40150572-40150612)
chr3 (201-241)||(40993326-40993366)
[»] chr7 (11 HSPs)
chr7 (213-251)||(3520345-3520383)
chr7 (216-251)||(8239056-8239091)
chr7 (164-267)||(9482935-9483040)
chr7 (211-254)||(24146831-24146874)
chr7 (212-257)||(3142080-3142125)
chr7 (201-241)||(640141-640181)
chr7 (201-241)||(5835275-5835315)
chr7 (202-254)||(18213025-18213077)
chr7 (211-274)||(19206044-19206108)
chr7 (211-251)||(22602711-22602751)
chr7 (205-241)||(48438574-48438610)
[»] chr2 (8 HSPs)
chr2 (201-241)||(34993973-34994013)
chr2 (211-254)||(20242728-20242771)
chr2 (211-249)||(34691806-34691844)
chr2 (211-249)||(34714218-34714256)
chr2 (211-263)||(44860325-44860378)
chr2 (201-241)||(5367220-5367260)
chr2 (211-251)||(35056886-35056926)
chr2 (163-203)||(42511322-42511362)
[»] scaffold0110 (1 HSPs)
scaffold0110 (212-251)||(28868-28907)
[»] scaffold0376 (1 HSPs)
scaffold0376 (211-241)||(6340-6370)
[»] scaffold0123 (1 HSPs)
scaffold0123 (214-263)||(44529-44579)
[»] scaffold0011 (1 HSPs)
scaffold0011 (210-251)||(240021-240062)


Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 16066353 - 16066657
Alignment:
Q  1 atataaaatacttaaaatgatcatgacggaatccttgcagggccatcttaatccaatacgatctcatccccaaacaaccatggg--acttgccatcccgt 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||    
T  16066353 atataaaatacttaaaatgatcatgacggaatccttgcagggccatcttaatccaatatgatctcatccccaaacaaccatggggtacttgccatcccgt 16066452  T
Q  99 ccaaatcgaaaaaacactc-tatgtgggccccaaatggagcagtgcgcagggagttcctactttcctatgaagcacgaacacttctcagattagccgtgt 197  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||| | |||||| ||||||||| |||    
T  16066453 ccaaatggaaaaaacactcgtatgtgggccccaaatggagcagtgcgcaaggagttcctacttttctattaagcacggagacttcttagattagccatgt 16066552  T
Q  198 ccctgtcgtgtttgacaccgacacatataattacattga-------attataagattttctaaa-tttttagcgatgttggcgtggcttatctgtgtcgt 289  Q
    |  |||| ||| ||||| |||||||||||||||||||||       |||||| ||||||||||| |||||||| ||||||||||||||||||||||| ||    
T  16066553 ctatgtcatgtctgacatcgacacatataattacattgaattatatattatatgattttctaaattttttagcaatgttggcgtggcttatctgtgttgt 16066652  T
Q  290 gtctg 294  Q
    |||||    
T  16066653 gtctg 16066657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 165 - 271
Target Start/End: Complemental strand, 16189813 - 16189706
Alignment:
Q  165 atgaagcacgaacacttctcagattagccgtgtccctgtcgtgtttgacaccgacacatataattacattgaattataagattttct-aaatttttagcg 263  Q
    |||||||| | |||||||||||||||||| |||||| |  ||||  | |||||||||| ||||||||| ||||||||  |||||||| ||||||||||||    
T  16189813 atgaagcatggacacttctcagattagccatgtcccggctgtgtccgtcaccgacacacataattacactgaattatgtgattttctcaaatttttagcg 16189714  T
Q  264 atgttggc 271  Q
     |||||||    
T  16189713 gtgttggc 16189706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 32915610 - 32915662
Alignment:
Q  214 accgacacatataattacattgaattataagattttctaaatttttagcgatg 266  Q
    ||||| ||||||||||||||||||||||  |||||| |||||| |||||||||    
T  32915610 accgaaacatataattacattgaattatgtgattttttaaattattagcgatg 32915662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 4383484 - 4383426
Alignment:
Q  164 tatgaagcacgaacacttctcagattagccgtgtccc-tgtcgtgtttgacaccgacac 221  Q
    ||||||||||| ||||| ||| |||||| |||||||  |||||||||||||||||||||    
T  4383484 tatgaagcacggacactcctcggattaggcgtgtccggtgtcgtgtttgacaccgacac 4383426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 251
Target Start/End: Original strand, 8402733 - 8402783
Alignment:
Q  201 tgtcgtgtttgacaccgacacatataattacattgaattataagattttct 251  Q
    |||||||| |||||| || ||||||||||||| ||||||||| ||||||||    
T  8402733 tgtcgtgtctgacactgagacatataattacactgaattatatgattttct 8402783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 22234818 - 22234855
Alignment:
Q  162 cctatgaagcacgaacacttctcagattagccgtgtcc 199  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  22234818 cctatgaagcacgaacacttctcggattagctgtgtcc 22234855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 20950420 - 20950456
Alignment:
Q  203 tcgtgtttgacaccgacacatataattacattgaatt 239  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  20950420 tcgtgtctgacaccgacacatataattacactgaatt 20950456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 242
Target Start/End: Original strand, 25742913 - 25742941
Alignment:
Q  214 accgacacatataattacattgaattata 242  Q
    |||||||||||||||||||||||||||||    
T  25742913 accgacacatataattacattgaattata 25742941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 263
Target Start/End: Complemental strand, 7378098 - 7377984
Alignment:
Q  163 ctatgaagcacgaacacttctcagattagccgtgtccc-------------tgtcgtgtttgacaccgacacatataattacattgaattataagatttt 249  Q
    |||||||||||| |||||||||||||||||||||||||             ||||||||  |||||||||||||||||||||||||||||||  ||||||    
T  7378098 ctatgaagcacggacacttctcagattagccgtgtcccggtgtcggatgcatgtcgtgtccgacaccgacacatataattacattgaattatgtgatttt 7377999  T
Q  250 ct-aaatttttagcg 263  Q
    || ||||||||||||    
T  7377998 ctcaaatttttagcg 7377984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 271
Target Start/End: Original strand, 34073348 - 34073409
Alignment:
Q  211 gacaccgacacatataattacattgaattataagattttct-aaatttttagcgatgttggc 271  Q
    ||||||||| |||||||||||| |||||||| ||||||||| ||||| ||||||||||||||    
T  34073348 gacaccgacccatataattacactgaattatgagattttctcaaattattagcgatgttggc 34073409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 211 - 274
Target Start/End: Original strand, 7265594 - 7265658
Alignment:
Q  211 gacaccgacacatataattacattgaattataagattttct-aaatttttagcgatgttggcgtg 274  Q
    |||||||||||||||||||||| ||||||||  |||||||| ||||| |||||| ||||||||||    
T  7265594 gacaccgacacatataattacactgaattatgtgattttctcaaattattagcggtgttggcgtg 7265658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 251
Target Start/End: Original strand, 9025448 - 9025535
Alignment:
Q  166 tgaagcacgaacacttctcagattagccgtgtccc--tgtcgtgtttgacaccgacacatataattacattgaattataagattttct 251  Q
    ||||||||| ||||||||| |||||| ||||||||  |||||     |||||||||||||||||||||| ||||||||  ||||||||    
T  9025448 tgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacgacaccgacacatataattacactgaattatgtgattttct 9025535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 9617492 - 9617452
Alignment:
Q  211 gacaccgacacatataattacattgaattataagattttct 251  Q
    |||||||||||||||||||||||||||||||  ||||||||    
T  9617492 gacaccgacacatataattacattgaattatgtgattttct 9617452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 9629441 - 9629401
Alignment:
Q  211 gacaccgacacatataattacattgaattataagattttct 251  Q
    |||||||||||||||||||||||||||||||  ||||||||    
T  9629441 gacaccgacacatataattacattgaattatgtgattttct 9629401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 270
Target Start/End: Original strand, 30866149 - 30866205
Alignment:
Q  215 ccgacacatataattacattgaattataagattttct-aaatttttagcgatgttgg 270  Q
    |||||||||||||||||||||||||||  |||||||| ||||| |||||| ||||||    
T  30866149 ccgacacatataattacattgaattatgtgattttctcaaattattagcggtgttgg 30866205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 274
Target Start/End: Complemental strand, 9658947 - 9658873
Alignment:
Q  201 tgtcgtgtttgacaccgacacatataattacattgaattataagattttc-taaatttttagcgatgttggcgtg 274  Q
    |||||||| | ||||||||| ||||||||||| ||||||||  ||||||| |||||| |||||| ||| ||||||    
T  9658947 tgtcgtgtctaacaccgacaaatataattacactgaattatgtgattttcttaaattattagcggtgtcggcgtg 9658873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 274
Target Start/End: Complemental strand, 19040420 - 19040346
Alignment:
Q  201 tgtcgtgtttgacaccgacacatataattacattgaattataagattttct-aaatttttagcgatgttggcgtg 274  Q
    ||||||||  ||||| |||||||||||||||| ||||||||  |||||||| ||||| |||||| ||| ||||||    
T  19040420 tgtcgtgtccgacacagacacatataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtg 19040346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 197
Target Start/End: Original strand, 21424744 - 21424778
Alignment:
Q  163 ctatgaagcacgaacacttctcagattagccgtgt 197  Q
    |||||||||||| ||||||||||||||||||||||    
T  21424744 ctatgaagcacggacacttctcagattagccgtgt 21424778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 239
Target Start/End: Complemental strand, 30851668 - 30851630
Alignment:
Q  201 tgtcgtgtttgacaccgacacatataattacattgaatt 239  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  30851668 tgtcgtgtccgacaccgacacatataattacattgaatt 30851630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 274
Target Start/End: Original strand, 20371106 - 20371175
Alignment:
Q  206 tgtttgacaccgacacatataattacattgaattataagattttct-aaatttttagcgatgttggcgtg 274  Q
    |||| |||||||||||||||||| ||||||| ||||  |||||||| ||||| |||||| ||| ||||||    
T  20371106 tgttcgacaccgacacatataatcacattgagttatgtgattttctcaaattattagcggtgtcggcgtg 20371175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 33419237 - 33419200
Alignment:
Q  205 gtgtttgacaccgacacatataattacattgaattata 242  Q
    |||| ||||||| |||||||||||||||||||||||||    
T  33419237 gtgtctgacaccaacacatataattacattgaattata 33419200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 7996379 - 7996419
Alignment:
Q  211 gacaccgacacatataattacattgaattataagattttct 251  Q
    ||||||||| |||||||||||| ||||||||| ||||||||    
T  7996379 gacaccgacgcatataattacactgaattatatgattttct 7996419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 8022422 - 8022382
Alignment:
Q  211 gacaccgacacatataattacattgaattataagattttct 251  Q
    ||||||||| |||||||||||| ||||||||| ||||||||    
T  8022422 gacaccgacgcatataattacactgaattatatgattttct 8022382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 263
Target Start/End: Complemental strand, 24832641 - 24832593
Alignment:
Q  216 cgacacatataattacattgaattataagattttct-aaatttttagcg 263  Q
    ||||||||||||||||| | |||||||||||||||| ||||| ||||||    
T  24832641 cgacacatataattacactaaattataagattttctcaaattattagcg 24832593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 26314625 - 26314673
Alignment:
Q  201 tgtcgtgtttgacaccgacacatataattacattgaattataagatttt 249  Q
    |||||| | |||| |||||| ||||||||||||||||||||| ||||||    
T  26314625 tgtcgtatctgaccccgacatatataattacattgaattatatgatttt 26314673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 262
Target Start/End: Complemental strand, 26562747 - 26562695
Alignment:
Q  211 gacaccgacacatataattacattgaattataagattttct-aaatttttagc 262  Q
    |||| ||||||||||||||||| ||||||||  |||||||| |||||||||||    
T  26562747 gacatcgacacatataattacactgaattatgtgattttctcaaatttttagc 26562695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 33001280 - 33001320
Alignment:
Q  201 tgtcgtgtttgacaccgacacatataattacattgaattat 241  Q
    ||||||||  |||||||||||||||||||||||| ||||||    
T  33001280 tgtcgtgtccgacaccgacacatataattacatttaattat 33001320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 274
Target Start/End: Original strand, 29163323 - 29163446
Alignment:
Q  165 atgaagcacgaacacttctcagattagccgtgtccc-------------tgtcgtgtttgacaccgacacatataattacattgaattataagatttt-c 250  Q
    |||||||||||||||||||| |||||||||||||||             ||||||||  |||||||||||||||||||| ||||||||||  |||||| |    
T  29163323 atgaagcacgaacacttctctgattagccgtgtcccggtgtcaggcacgtgtcgtgtccgacaccgacacatataattaaattgaattatgtgattttcc 29163422  T
Q  251 taaatttttagcgatgttggcgtg 274  Q
    ||||||||||||| ||| ||||||    
T  29163423 taaatttttagcggtgtcggcgtg 29163446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 211 - 274
Target Start/End: Complemental strand, 6427408 - 6427344
Alignment:
Q  211 gacaccgacacatataattacattgaattataagattttct-aaatttttagcgatgttggcgtg 274  Q
    |||||| ||||||||||||||||||||||||  |||||||| ||||| |||||| ||||||||||    
T  6427408 gacaccaacacatataattacattgaattatgtgattttctcaaattattagcggtgttggcgtg 6427344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 241
Target Start/End: Complemental strand, 13436570 - 13436486
Alignment:
Q  155 ctactttcctatgaagcacgaacacttctcagattagccgtgtccctgtcgtgtttgacaccgacacatataattacattgaattat 241  Q
    |||||||||||||||||||| ||||||||| |||||| ||||| |    |||||  |||||| ||||||||||||||| ||||||||    
T  13436570 ctactttcctatgaagcacggacacttctcggattagtcgtgttc--tacgtgtccgacaccaacacatataattacactgaattat 13436486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 263
Target Start/End: Complemental strand, 34371771 - 34371719
Alignment:
Q  211 gacaccgacacatataattacattgaattataagattttctaaatttttagcg 263  Q
    |||||||||||||||||||||| ||||||||  |||||||| |||| ||||||    
T  34371771 gacaccgacacatataattacactgaattatgtgattttctcaattattagcg 34371719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 254
Target Start/End: Complemental strand, 30749898 - 30749855
Alignment:
Q  211 gacaccgacacatataattacattgaattataagattttctaaa 254  Q
    |||||||||||||||||||||| ||||||||  |||||||||||    
T  30749898 gacaccgacacatataattacactgaattatgtgattttctaaa 30749855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 254
Target Start/End: Complemental strand, 30771349 - 30771306
Alignment:
Q  211 gacaccgacacatataattacattgaattataagattttctaaa 254  Q
    |||||||||||||||||||||| ||||||||  |||||||||||    
T  30771349 gacaccgacacatataattacactgaattatgtgattttctaaa 30771306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 241
Target Start/End: Original strand, 22881566 - 22881647
Alignment:
Q  162 cctatgaagcacgaacacttctcagattagccgtgtccc--tgtcgtgtttgacaccgacacatataattacattgaattat 241  Q
    ||||||||||||| ||||| ||| |||||| ||||||||  ||||||||  ||||||||||| | |||||||| | ||||||    
T  22881566 cctatgaagcacggacactcctcggattagacgtgtcccggtgtcgtgtccgacaccgacacttgtaattacactaaattat 22881647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 249
Target Start/End: Complemental strand, 52903307 - 52903269
Alignment:
Q  211 gacaccgacacatataattacattgaattataagatttt 249  Q
    |||||||||||||||||||||| ||||||||| ||||||    
T  52903307 gacaccgacacatataattacactgaattatatgatttt 52903269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 263
Target Start/End: Complemental strand, 38503378 - 38503325
Alignment:
Q  211 gacaccgacacatataattacattgaattataagattttct-aaatttttagcg 263  Q
    |||||||||||||||||||||| |||| |||| |||||||| ||||| ||||||    
T  38503378 gacaccgacacatataattacactgaaatatatgattttctcaaattattagcg 38503325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 5898257 - 5898297
Alignment:
Q  201 tgtcgtgtttgacaccgacacatataattacattgaattat 241  Q
    |||||||| |||||||||| |||||||||||| ||||||||    
T  5898257 tgtcgtgtctgacaccgacgcatataattacactgaattat 5898297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 12919063 - 12919027
Alignment:
Q  164 tatgaagcacgaacacttctcagattagccgtgtccc 200  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  12919063 tatgaagcacgaacacttctcggataagccgtgtccc 12919027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 274
Target Start/End: Complemental strand, 36878519 - 36878455
Alignment:
Q  211 gacaccgacacatataattacattgaattataagattttct-aaatttttagcgatgttggcgtg 274  Q
    ||||||||||| |||||||||| ||||||||  |||||||| ||||| |||||| ||| ||||||    
T  36878519 gacaccgacacctataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtg 36878455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 44482288 - 44482248
Alignment:
Q  211 gacaccgacacatataattacattgaattataagattttct 251  Q
    |||||||||||||||||||||| ||||||||  ||||||||    
T  44482288 gacaccgacacatataattacactgaattatgtgattttct 44482248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 201 - 259
Target Start/End: Complemental strand, 42029820 - 42029762
Alignment:
Q  201 tgtcgtgtttgacaccgacacatataattacattgaattataagattttctaaattttt 259  Q
    ||||||||  |||||||| ||||||||||||||||||||||  ||||||||||||||||    
T  42029820 tgtcgtgtccgacaccgatacatataattacattgaattatgtgattttctaaattttt 42029762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 251
Target Start/End: Original strand, 23012410 - 23012449
Alignment:
Q  212 acaccgacacatataattacattgaattataagattttct 251  Q
    ||||||||||||||||||||||| ||||||| ||||||||    
T  23012410 acaccgacacatataattacattaaattatatgattttct 23012449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 251
Target Start/End: Original strand, 17925167 - 17925213
Alignment:
Q  205 gtgtttgacaccgacacatataattacattgaattataagattttct 251  Q
    ||||| ||||||||||||||| |||||||||||||||  ||||||||    
T  17925167 gtgttcgacaccgacacatattattacattgaattatgtgattttct 17925213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 18145296 - 18145334
Alignment:
Q  203 tcgtgtttgacaccgacacatataattacattgaattat 241  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  18145296 tcgtgtttgacaccaacacatatgattacattgaattat 18145334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 32426863 - 32426913
Alignment:
Q  204 cgtgtttgacaccgacacatataattacattgaattataagattttctaaa 254  Q
    |||||| |||||||||||| ||||||||| ||||||||  |||||||||||    
T  32426863 cgtgttagacaccgacacaaataattacaatgaattatgtgattttctaaa 32426913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 241
Target Start/End: Complemental strand, 6247730 - 6247650
Alignment:
Q  162 cctatgaagcacgaacacttctcagattagccgtgtccc-tgtcgtgtttgacaccgacacatataattacattgaattat 241  Q
    ||||||||||||  ||||||||| ||||||  ||||||| || |||||  ||||||||||| | |||||||| ||||||||    
T  6247730 cctatgaagcacagacacttctcggattaggtgtgtcccgtgccgtgtccgacaccgacacttgtaattacactgaattat 6247650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 15086529 - 15086489
Alignment:
Q  211 gacaccgacacatataattacattgaattataagattttct 251  Q
    ||||||||||||||||||||||||  |||||| ||||||||    
T  15086529 gacaccgacacatataattacattacattatatgattttct 15086489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 16203796 - 16203836
Alignment:
Q  211 gacaccgacacatataattacattgaattataagattttct 251  Q
    |||||||||||||||||||||| | |||||| |||||||||    
T  16203796 gacaccgacacatataattacactaaattatgagattttct 16203836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 268
Target Start/End: Original strand, 30502379 - 30502447
Alignment:
Q  201 tgtcgtgtttgacaccgacacatataattacattgaattataagattttct-aaatttttagcgatgtt 268  Q
    ||||||||  |||||||||||||||||||||| |||||||   |||||||| ||||| |||||| ||||    
T  30502379 tgtcgtgtccgacaccgacacatataattacactgaattaagtgattttctcaaattattagcggtgtt 30502447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 268
Target Start/End: Original strand, 30542722 - 30542790
Alignment:
Q  201 tgtcgtgtttgacaccgacacatataattacattgaattataagattttct-aaatttttagcgatgtt 268  Q
    ||||||||  |||||||||||||||||||||| |||||||   |||||||| ||||| |||||| ||||    
T  30542722 tgtcgtgtccgacaccgacacatataattacactgaattaagtgattttctcaaattattagcggtgtt 30542790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 32630736 - 32630776
Alignment:
Q  211 gacaccgacacatataattacattgaattataagattttct 251  Q
    ||||| ||||||||||||||||||||||||||  |||||||    
T  32630736 gacactgacacatataattacattgaattatataattttct 32630776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 254
Target Start/End: Complemental strand, 39758327 - 39758287
Alignment:
Q  214 accgacacatataattacattgaattataagattttctaaa 254  Q
    ||||||||||||||||||| ||||||||  |||||||||||    
T  39758327 accgacacatataattacactgaattatgtgattttctaaa 39758287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 269
Target Start/End: Original strand, 42126311 - 42126378
Alignment:
Q  201 tgtcgtgtttgacaccgacacatataattacattgaattataagattttctaaatttttagcgatgttg 269  Q
    |||||||||||||||  ||| ||||||||||| ||||||||||  ||||  ||||| ||||||||||||    
T  42126311 tgtcgtgtttgacactaacatatataattacactgaattataa-tttttgcaaattattagcgatgttg 42126378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 12606829 - 12606870
Alignment:
Q  210 tgacaccgacacatataattacattgaattataagattttct 251  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  12606829 tgacaccgacacatataattacattgaattatatgattttct 12606870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 251
Target Start/End: Complemental strand, 14134767 - 14134717
Alignment:
Q  201 tgtcgtgtttgacaccgacacatataattacattgaattataagattttct 251  Q
    |||||||||||||||||||| ||||||||||| ||||||||  ||||||||    
T  14134767 tgtcgtgtttgacaccgacatatataattacactgaattatgtgattttct 14134717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 254
Target Start/End: Complemental strand, 18964234 - 18964192
Alignment:
Q  212 acaccgacacatataattacattgaattataagattttctaaa 254  Q
    ||||||||||||||||||||||||||||||  |||||||||||    
T  18964234 acaccgacacatataattacattgaattatgtgattttctaaa 18964192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 240
Target Start/End: Complemental strand, 8293893 - 8293854
Alignment:
Q  201 tgtcgtgtttgacaccgacacatataattacattgaatta 240  Q
    |||| ||||||||||||||||||||||||||| |||||||    
T  8293893 tgtcatgtttgacaccgacacatataattacactgaatta 8293854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 292
Target Start/End: Complemental strand, 27213645 - 27213522
Alignment:
Q  162 cctatgaagcacgaacacttctcagattagccgtgtccctgtcgtgtttgacaccgacacatataattacattgaattataagattttct-aaattttta 260  Q
    ||||||||||||| ||||||||| ||||||||||||||| || ||        |||||||||||||||||| ||||||||  |||||||| ||||| |||    
T  27213645 cctatgaagcacggacacttctcggattagccgtgtcccggt-gt--------ccgacacatataattacagtgaattatgtgattttctgaaattatta 27213555  T
Q  261 gcgatgttggcgtggct-tatctgtgtcgtgtc 292  Q
    ||  ||| |||||| || |||| ||||||||||    
T  27213554 gcagtgtcggcgtgtctgtatccgtgtcgtgtc 27213522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 251
Target Start/End: Original strand, 31236532 - 31236618
Alignment:
Q  164 tatgaagcacgaacacttctcagattagccgtgtccctgtcgtgtttgacaccgacacatataattacattgaattataagattttct 251  Q
    ||||| ||||| ||||||||  | ||||| |||||||  ||||||  | |||||||||||||||||||||||||||||  ||||||||    
T  31236532 tatgaggcacggacacttctagggttagctgtgtccca-tcgtgtccgtcaccgacacatataattacattgaattatgtgattttct 31236618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 248
Target Start/End: Original strand, 28384994 - 28385032
Alignment:
Q  210 tgacaccgacacatataattacattgaattataagattt 248  Q
    ||||||||||||||||||||||| |||||||| ||||||    
T  28384994 tgacaccgacacatataattacactgaattatgagattt 28385032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 26902176 - 26902217
Alignment:
Q  211 gacaccgacacatataattacattgaattataagattttcta 252  Q
    |||||||||||||||||||||| ||||||||  |||||||||    
T  26902176 gacaccgacacatataattacactgaattatgtgattttcta 26902217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 4786339 - 4786379
Alignment:
Q  211 gacaccgacacatataattacattgaattataagattttct 251  Q
    |||||||||||||||||||||| ||||||||  ||||||||    
T  4786339 gacaccgacacatataattacactgaattatgtgattttct 4786379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 211 - 274
Target Start/End: Original strand, 8039836 - 8039900
Alignment:
Q  211 gacaccgacacatataattacattgaattataagattttct-aaatttttagcgatgttggcgtg 274  Q
    |||||||||||||||||||||| |||||||||  ||||||| ||||| |||||| ||||||||||    
T  8039836 gacaccgacacatataattacactgaattatataattttctcaaattattagcggtgttggcgtg 8039900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 176 - 254
Target Start/End: Complemental strand, 13414559 - 13414484
Alignment:
Q  176 acacttctcagattagccgtgtccctgtcgtgtttgacaccgacacatataattacattgaattataagattttctaaa 254  Q
    ||||||||| ||| || |||||||||||   ||  |||||||||||||||||||||||||||||||  |||||||||||    
T  13414559 acacttctcggataaggcgtgtccctgt---gtccgacaccgacacatataattacattgaattatttgattttctaaa 13414484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 254
Target Start/End: Complemental strand, 35222996 - 35222953
Alignment:
Q  211 gacaccgacacatataattacattgaattataagattttctaaa 254  Q
    |||||||||||||||||||||||||||||||  |||||||||||    
T  35222996 gacaccgacacatataattacattgaattatgtgattttctaaa 35222953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 274
Target Start/End: Complemental strand, 8383315 - 8383251
Alignment:
Q  211 gacaccgacacatataattacattgaattataagattttct-aaatttttagcgatgttggcgtg 274  Q
    ||||||||||| |||||||||| ||||||||| |||||||| ||||| |||||| ||| ||||||    
T  8383315 gacaccgacacttataattacactgaattatatgattttctcaaattattagcggtgtcggcgtg 8383251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 251
Target Start/End: Original strand, 48202264 - 48202310
Alignment:
Q  205 gtgtttgacaccgacacatataattacattgaattataagattttct 251  Q
    ||||||||||| |||||||||||||||||| ||||||  ||||||||    
T  48202264 gtgtttgacacagacacatataattacattaaattatgtgattttct 48202310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 240
Target Start/End: Original strand, 24633403 - 24633431
Alignment:
Q  212 acaccgacacatataattacattgaatta 240  Q
    |||||||||||||||||||||||||||||    
T  24633403 acaccgacacatataattacattgaatta 24633431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 40150572 - 40150612
Alignment:
Q  211 gacaccgacacatataattacattgaattataagattttct 251  Q
    ||||||||||||||| ||||||||||||||||  |||||||    
T  40150572 gacaccgacacatatgattacattgaattatatcattttct 40150612  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 40993326 - 40993366
Alignment:
Q  201 tgtcgtgtttgacaccgacacatataattacattgaattat 241  Q
    ||||||||  |||||||||||||||||||||| ||||||||    
T  40993326 tgtcgtgtccgacaccgacacatataattacactgaattat 40993366  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 251
Target Start/End: Original strand, 3520345 - 3520383
Alignment:
Q  213 caccgacacatataattacattgaattataagattttct 251  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  3520345 caccgacacatataattacattgaattatatgattttct 3520383  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 216 - 251
Target Start/End: Original strand, 8239056 - 8239091
Alignment:
Q  216 cgacacatataattacattgaattataagattttct 251  Q
    ||||||||||||||||| ||||||||||||||||||    
T  8239056 cgacacatataattacactgaattataagattttct 8239091  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 267
Target Start/End: Complemental strand, 9483040 - 9482935
Alignment:
Q  164 tatgaagcacgaacacttctcagattagccgtgtccc--tgtcgtgtttgacaccgacacatataattacattgaattataagattttct-aaattttta 260  Q
    ||||||||||| |||||||||  |||||| |||||||  ||||| ||  |||||||||||||||||||||| |||||| |  |||||||| ||||| | |    
T  9483040 tatgaagcacggacacttctcgtattagc-gtgtcccggtgtcgcgtccgacaccgacacatataattacactgaattgtgtgattttctcaaattatca 9482942  T
Q  261 gcgatgt 267  Q
    |||||||    
T  9482941 gcgatgt 9482935  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 254
Target Start/End: Complemental strand, 24146874 - 24146831
Alignment:
Q  211 gacaccgacacatataattacattgaattataagattttctaaa 254  Q
    |||||||||||||||||||| ||||||||||  |||||||||||    
T  24146874 gacaccgacacatataattatattgaattatgtgattttctaaa 24146831  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 257
Target Start/End: Original strand, 3142080 - 3142125
Alignment:
Q  212 acaccgacacatataattacattgaattataagattttctaaattt 257  Q
    |||||||||||||| |||||||||||||||| ||||| || |||||    
T  3142080 acaccgacacatatgattacattgaattatatgatttactcaattt 3142125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 241
Target Start/End: Complemental strand, 640181 - 640141
Alignment:
Q  201 tgtcgtgtttgacaccgacacatataattacattgaattat 241  Q
    |||||| | ||||||||||||||||||||||| ||||||||    
T  640181 tgtcgtatctgacaccgacacatataattacactgaattat 640141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 241
Target Start/End: Complemental strand, 5835315 - 5835275
Alignment:
Q  201 tgtcgtgtttgacaccgacacatataattacattgaattat 241  Q
    |||| ||| ||||||||||||||||||||||| ||||||||    
T  5835315 tgtcatgtctgacaccgacacatataattacactgaattat 5835275  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 254
Target Start/End: Original strand, 18213025 - 18213077
Alignment:
Q  202 gtcgtgtttgacaccgacacatataattacattgaattataagattttctaaa 254  Q
    |||||||  |||||||||||||||||||||| | ||||||  |||||||||||    
T  18213025 gtcgtgtccgacaccgacacatataattacactaaattatgtgattttctaaa 18213077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 274
Target Start/End: Complemental strand, 19206108 - 19206044
Alignment:
Q  211 gacaccgacacatataattacattgaattataagattttct-aaatttttagcgatgttggcgtg 274  Q
    |||||||||||||||||||| | ||||||||  |||||||| ||||| |||||| ||| ||||||    
T  19206108 gacaccgacacatataattataatgaattatgtgattttctcaaattattagcggtgtcggcgtg 19206044  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 22602711 - 22602751
Alignment:
Q  211 gacaccgacacatataattacattgaattataagattttct 251  Q
    |||||||||||||||||||||| ||||||||  ||||||||    
T  22602711 gacaccgacacatataattacactgaattatgtgattttct 22602751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 48438610 - 48438574
Alignment:
Q  205 gtgtttgacaccgacacatataattacattgaattat 241  Q
    ||||||||||||||||| | |||||||||||||||||    
T  48438610 gtgtttgacaccgacacgtgtaattacattgaattat 48438574  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 34993973 - 34994013
Alignment:
Q  201 tgtcgtgtttgacaccgacacatataattacattgaattat 241  Q
    ||||||||| ||||| |||||||||||||||||||||||||    
T  34993973 tgtcgtgttcgacactgacacatataattacattgaattat 34994013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 254
Target Start/End: Original strand, 20242728 - 20242771
Alignment:
Q  211 gacaccgacacatataattacattgaattataagattttctaaa 254  Q
    |||||||||||||||||||||| ||||||||  |||||||||||    
T  20242728 gacaccgacacatataattacactgaattatgtgattttctaaa 20242771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 249
Target Start/End: Original strand, 34691806 - 34691844
Alignment:
Q  211 gacaccgacacatataattacattgaattataagatttt 249  Q
    |||||||||||||||||||||| ||||||||| ||||||    
T  34691806 gacaccgacacatataattacactgaattatatgatttt 34691844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 249
Target Start/End: Original strand, 34714218 - 34714256
Alignment:
Q  211 gacaccgacacatataattacattgaattataagatttt 249  Q
    |||||||||||||||||||||| ||||||||| ||||||    
T  34714218 gacaccgacacatataattacactgaattatatgatttt 34714256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 263
Target Start/End: Complemental strand, 44860378 - 44860325
Alignment:
Q  211 gacaccgacacatataattacattgaattataagattttct-aaatttttagcg 263  Q
    |||||||||||||||||||||| ||||||||  |||||||| ||||| ||||||    
T  44860378 gacaccgacacatataattacactgaattatgcgattttctcaaattattagcg 44860325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 241
Target Start/End: Complemental strand, 5367260 - 5367220
Alignment:
Q  201 tgtcgtgtttgacaccgacacatataattacattgaattat 241  Q
    ||||||||  |||||||||||||||||||||| ||||||||    
T  5367260 tgtcgtgtccgacaccgacacatataattacactgaattat 5367220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 35056926 - 35056886
Alignment:
Q  211 gacaccgacacatataattacattgaattataagattttct 251  Q
    |||||||||||||||||||||| ||||||||| | ||||||    
T  35056926 gacaccgacacatataattacactgaattatatggttttct 35056886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 42511322 - 42511362
Alignment:
Q  163 ctatgaagcacgaacacttctcagattagccgtgtccctgt 203  Q
    |||||||||||| ||||| ||| ||||||||||||||||||    
T  42511322 ctatgaagcacggacactcctcggattagccgtgtccctgt 42511362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 251
Target Start/End: Complemental strand, 28907 - 28868
Alignment:
Q  212 acaccgacacatataattacattgaattataagattttct 251  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  28907 acaccgacacatataattacattgaattatgcgattttct 28868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0376 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 241
Target Start/End: Complemental strand, 6370 - 6340
Alignment:
Q  211 gacaccgacacatataattacattgaattat 241  Q
    |||||||||||||||||||||||||||||||    
T  6370 gacaccgacacatataattacattgaattat 6340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 44529 - 44579
Alignment:
Q  214 accgacacatataattacattgaattataagattttct-aaatttttagcg 263  Q
    ||||||||||||||||||| ||||||||  |||||||| ||||||||||||    
T  44529 accgacacatataattacactgaattatgtgattttctcaaatttttagcg 44579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 240021 - 240062
Alignment:
Q  210 tgacaccgacacatataattacattgaattataagattttct 251  Q
    |||||||||||||||| ||||||||||||||||  |||||||    
T  240021 tgacaccgacacatatgattacattgaattatattattttct 240062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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