View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15595_low_12 (Length: 268)
Name: NF15595_low_12
Description: NF15595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15595_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 34 - 252
Target Start/End: Complemental strand, 43149318 - 43149100
Alignment:
| Q |
34 |
atttatatttaagattggatagagtatgacatattcttatgaatatacaagagctcgatgaataagcaaagctccctcctacctatttgnnnnnnnnnnn |
133 |
Q |
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| T |
43149318 |
atttatatttaagattggatagagtatgacatattcttatgaatatacaagagctcgatgaataagcaaagctccctcctacctatttgtttttactttt |
43149219 |
T |
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| Q |
134 |
nnnctactgtctagattgaaactataaatgttgagactatttgtagacaaatagatacaggtggagagtgagtcttatcctgtcatccaactcttgttta |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
43149218 |
tttctactgtctagattgaaactataaatgttgagactatttgtagacaaatagatacaagtggagagtgagtcttatcctgtcatccaactcttgttta |
43149119 |
T |
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| Q |
234 |
acaagaaaaagatctaaat |
252 |
Q |
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||||||||||||||||||| |
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| T |
43149118 |
acaagaaaaagatctaaat |
43149100 |
T |
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