View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15595_low_14 (Length: 249)
Name: NF15595_low_14
Description: NF15595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15595_low_14 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 131 - 249
Target Start/End: Original strand, 38731890 - 38732008
Alignment:
| Q |
131 |
aatatatattagaaatttggaagatcattgagataattaaaccacactactcctgtctttttcttaaggctctttgatgcttcaagggccagtcaaagaa |
230 |
Q |
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| T |
38731890 |
aatatatattagaaatttggaagatcattgagataattaaaccacactactcctgtctttttcttaaggctctttgatgcttcaagggccagtcaaagaa |
38731989 |
T |
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| Q |
231 |
tattatttattgtcactat |
249 |
Q |
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| T |
38731990 |
tattatttattgtcactat |
38732008 |
T |
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Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 38731776 - 38731835
Alignment:
| Q |
16 |
gactaatcacattcatttatttttaatgattcatagttcgtcgttgattatttaccaaag |
75 |
Q |
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||||||||||||||||||||||| | |||||||||||||||| ||||| ||||||||||| |
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| T |
38731776 |
gactaatcacattcatttattttcagtgattcatagttcgtcattgatcatttaccaaag |
38731835 |
T |
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