View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15595_low_2 (Length: 563)
Name: NF15595_low_2
Description: NF15595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15595_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 16 - 545
Target Start/End: Original strand, 10462747 - 10463276
Alignment:
| Q |
16 |
atatacaaatgttatggaattgtacccaattgttaaaaattcatcatgaaattcaactgataattaactcagatttggaaaaaatgtaggaagattgatt |
115 |
Q |
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| T |
10462747 |
atatacaaatgttatggaattgtacccaattgttaaaaattcatcatgaaattcaactgataattaactcagatttggaaaaaatgtaggaagattgatt |
10462846 |
T |
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| Q |
116 |
gaattcaatttataatgagcgcactagtaggacttaaacaagaaacttccatctcacagatggtatacagagaatttgtttagccacaatgttgaattag |
215 |
Q |
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| T |
10462847 |
gaattcaatttataatgagcgcactagtaggacttaaacaagaaacttccatctcacagatggtatacagagaatttgtttagccacaatgttgaattag |
10462946 |
T |
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| Q |
216 |
ttattatagcttgataaatttatttaagctacttcatcaaaaaacaagatataccgcaaattctattgccagcagaagattaagatgaagcatgtgactc |
315 |
Q |
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| T |
10462947 |
ttattatagcttgataaatttatttaagctacttcatcaaaaaacaagatataccgcaaattctattgccagcagaagattaagatgaagcatgtgactc |
10463046 |
T |
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| Q |
316 |
acatgcacagcacataaacaatgaaaacgtagtatttaaatccatagcatcaggacaatcgtttttattannnnnnnaacaattagtaagcaaaacaaga |
415 |
Q |
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| T |
10463047 |
acatgcacagcacataaacaatgaaaacgtagtatttaaatccatagcatcaggacaatcgtttttattatttttttaacaattagtaagcaaaacaaga |
10463146 |
T |
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| Q |
416 |
caatcattacttttagtttatactctttaaatcatctaaaagcaagatgcaaatgttcaacttgatccgtaaggttaggtaagcggcaagtaccatgacg |
515 |
Q |
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| T |
10463147 |
caatcattacttttagtttatactctttaaatcatctaaaagcaagatgcaaatgttcaacttgatccgtaaggttaggtaagcggcaagtaccatgacg |
10463246 |
T |
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| Q |
516 |
agaagcaaaattgacagcatagcgattatt |
545 |
Q |
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| T |
10463247 |
agaagcaaaattgacagcatagcaattatt |
10463276 |
T |
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