View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15595_low_3 (Length: 528)
Name: NF15595_low_3
Description: NF15595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15595_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 9 - 510
Target Start/End: Original strand, 44015099 - 44015600
Alignment:
| Q |
9 |
gatatgaactagaagttagagttttgaagaatggagttactggaataggacctgagaagttgttgtaggagatattgagtgaagtgagactagtaagaga |
108 |
Q |
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| T |
44015099 |
gatatgaactagaagttagagttttgaagaatggagttactggaataggacctgagaagttgttgtaggagatattgagtgaagtgagactagtaagaga |
44015198 |
T |
|
| Q |
109 |
accaagaaccttaattcctccaaaaagcatgttccttgaaagatcaagtgattgtaactgtgtcaaagcagacattgaatcaggtatttcaccaatgaat |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
44015199 |
accaagaaccttaattcctccaaaaagcatgttccttgaaagatcaagtgattgtaactgtgtcaaagcagacattgaatctggtatttcaccaatgaac |
44015298 |
T |
|
| Q |
209 |
gaatttgagctcaaatccaaactgattgttaggcttgtaacatgaccaatctctggaggtatgctaccagataagctattgtaactcaaatccaaaagag |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
44015299 |
gaatttgagctcaaatccaaactgattgttaggcttgtaacatgaccaatctctggaggtatgctaccagataagctattataactcaaatccaaaagag |
44015398 |
T |
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| Q |
309 |
ttagcttctgtagatttctaacagattttggtattgagcctgttaataaattattgttgagaataagcttgttcaaatagctcaagttcccaaagctcca |
408 |
Q |
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| T |
44015399 |
ttagcttctgtagatttctaacagattttggtattgagcctgttaataaattattgttgagaataagcttgttcaaatagctcaagttcccaaagctcca |
44015498 |
T |
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| Q |
409 |
aggaatttcacctgtcaaactgtttctactaagatcaagctgctccaaattttcaagctcaccaatcagggatggaatttctccgacgaggtagttgtta |
508 |
Q |
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| T |
44015499 |
aggaatttcacctgtcaaactgtttctactaagatcaagctgctccaaattttcaagctcaccaatcagggatggaatttctccaccgaggtagttgtta |
44015598 |
T |
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| Q |
509 |
tg |
510 |
Q |
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| T |
44015599 |
tg |
44015600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 211 - 387
Target Start/End: Original strand, 34765349 - 34765526
Alignment:
| Q |
211 |
atttgagctcaaatccaaactgattgttaggcttgtaacatgaccaatctctggaggtatgctaccagataagctattgtaactcaaatccaaaagagtt |
310 |
Q |
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|||||||||||||| |||||| ||||| | |||||| ||||||||| |||| |||| |||| || |||||||| || || ||||||||||||| |||| |
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| T |
34765349 |
atttgagctcaaatacaaacttattgtaaagcttgttgcatgaccaaactcttgaggcatgcaactggataagctgttatagctcaaatccaaaaaagtt |
34765448 |
T |
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| Q |
311 |
agcttctgtagatttctaacagattttggtattgagcctgttaataa-attattgttgagaataagcttgttcaaata |
387 |
Q |
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| T |
34765449 |
agcttctgaaaatttggtacagattttcaaattgaacctattaataatattattgttgagaataagcttgctcaaata |
34765526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 9e-19; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 9 - 81
Target Start/End: Original strand, 38800681 - 38800753
Alignment:
| Q |
9 |
gatatgaactagaagttagagttttgaagaatggagttactggaataggacctgagaagttgttgtaggagat |
81 |
Q |
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|||||||||||||||||||| ||||||||||| | |||||||||||||||||||| || ||||||||| |||| |
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| T |
38800681 |
gatatgaactagaagttagacttttgaagaatcgtgttactggaataggacctgataaattgttgtagaagat |
38800753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 290 - 433
Target Start/End: Original strand, 38800931 - 38801073
Alignment:
| Q |
290 |
taactcaaatccaaaagagttagcttctgtagatttctaacagattttggtattgagcctgttaataaattattgttgagaataagcttgttcaaatagc |
389 |
Q |
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|||||||||||||| |||||||||||||| | |||||||| |||||||||||||| | ||| | ||||||||||||| || | ||||||||| || |
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| T |
38800931 |
taactcaaatccaatagagttagcttctgcaaatttctaattgattttggtattgatcatgtaagcaaattattgttga-tatgaacttgttcaagtaat |
38801029 |
T |
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| Q |
390 |
tcaagttcccaaagctccaaggaatttcacctgtcaaactgttt |
433 |
Q |
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| || || |||| ||||||||| ||||||| ||||||||||||| |
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| T |
38801030 |
ttaaatttccaatgctccaagggatttcacatgtcaaactgttt |
38801073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 38821048 - 38820966
Alignment:
| Q |
15 |
aactagaagttagagttttgaagaatggagttactggaataggacctgagaagttgttgtaggagatattgagtgaagtgaga |
97 |
Q |
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||||||||||| || || ||||||||| ||||||||||||||||||||||| |||||||| ||||||| | ||||||||| |
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| T |
38821048 |
aactagaagttgaagattagaagaatggtgttactggaataggacctgagaaattgttgtataagatattctgggaagtgaga |
38820966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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