View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15595_low_6 (Length: 408)
Name: NF15595_low_6
Description: NF15595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15595_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 19 - 395
Target Start/End: Original strand, 33048090 - 33048467
Alignment:
| Q |
19 |
gcatatatatcattcaagagtcaaacaatgaagtgaataccttgcccaaaaggagctctccggaaggaagagataccaccaaaggtggtgctagcctccc |
118 |
Q |
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| T |
33048090 |
gcatatatatcattcaagagtcaaacaatgaagtgaataccttgcccaaaaggagctctccggaaggaagagataccaccaaaggtggtgctagcctccc |
33048189 |
T |
|
| Q |
119 |
agaagtaaaaacttcagatattgaaccactcgtagcattcagaatcacatacgcttttctaatccccaaacatatattctcacaacaccaactcattgac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33048190 |
agaagtaaaaacttcagatattgaaccactcgtagcattcagaatcacgtacgcttttctaatccccaaacatatattctcaccacaccaactcattgac |
33048289 |
T |
|
| Q |
219 |
ttcaccacatcaagaacaccaaagtctttcacctcaacaaatcctctaccacctaggaaaaacaccagcaa-aggtcatcataattaaggaaacacaatc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33048290 |
ttcaccacatcaagaacaccaaagtctttcacctcaacaaatcctctaccacctagcaaaaacaccagcaacaggtcatcataattaaggaaacacaatc |
33048389 |
T |
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| Q |
318 |
acatcaaaacagtaattttgttttgctcatctgtccgacatgtatttacattagatacttccaactatatttatgttc |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
33048390 |
acatcaaaacagtaattttgttttgctcatctgtccgacatgtatttacattagacacttccaactatatttatgttc |
33048467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 54 - 273
Target Start/End: Complemental strand, 7675146 - 7674927
Alignment:
| Q |
54 |
aataccttgcccaaaaggagctctccggaaggaagagataccaccaaaggtggtgctagcctcccagaagtaaaaacttcagatattgaaccactcgtag |
153 |
Q |
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|||||||| || | ||| |||||||| || |||| || || || ||||| || ||||| ||||||||||||||||| ||||| | | |||| | | || |
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| T |
7675146 |
aatacctttccaagaagcagctctcccgacggaataggcactactaaaggcggcgctagtctcccagaagtaaaaacctcagacaaagcaccatttgaag |
7675047 |
T |
|
| Q |
154 |
cattcagaatcacatacgcttttctaatccccaaacatatattctcacaacaccaactcattgacttcaccacatcaagaacaccaaagtctttcacctc |
253 |
Q |
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|||||| ||||||||| | ||||||||||||||||||||||||| | |||||||||||| |||||||||| || | |||||||| ||||||||||| |
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| T |
7675046 |
cattcaaaatcacatattcccttctaatccccaaacatatattctccccacaccaactcatggacttcaccatgtccggtacaccaaactctttcacctc |
7674947 |
T |
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| Q |
254 |
aacaaatcctctaccaccta |
273 |
Q |
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||||| || |||||||||| |
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| T |
7674946 |
cacaaaccccctaccaccta |
7674927 |
T |
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