View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15595_low_7 (Length: 377)
Name: NF15595_low_7
Description: NF15595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15595_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 41715850 - 41715490
Alignment:
| Q |
1 |
aatacagaacgtggaattgtactcgcgactgagtnnnnnnnntgatctaactgcagatgactcttggcggtgtatacaccctgataagagttgaatcttg |
100 |
Q |
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| T |
41715850 |
aatacagaacgtggaattgtactcgcaactgagtaaaaaaaatgatctaactgcagatgactcttggcggtgtatacaccctgataagagttgaatcttg |
41715751 |
T |
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| Q |
101 |
tatttagctgagggctattttggttcctctactgatatcaattgtttgggctactttgctctacataatgcataaggaccatttacaatttaactaaaaa |
200 |
Q |
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| T |
41715750 |
tatttagctgagggctattttggttcctctactgatatcaattgtttgggctactttgctctacataatgcataaggaccatttacaatttaactaaaaa |
41715651 |
T |
|
| Q |
201 |
gctgaattacataggcaatggttttgcacatgaagaaataatatttaaggtacttgacatttcaatatttaaggtttctacggaaatagtaaagttatga |
300 |
Q |
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| T |
41715650 |
gctgaattacataggcaatggttttgcacatgaagaaataatatttaaggtacttgacatttcaatatttaaggtttctacggaaatagtaaagttatga |
41715551 |
T |
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| Q |
301 |
agtacctaatagaagaatatgtatttttaatttaagacaatcctattggcatagtgaaatt |
361 |
Q |
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| T |
41715550 |
agtacctaatagaagaatatgtatttttaatttaagacaatcctattggcatagtaaaatt |
41715490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 46 - 132
Target Start/End: Complemental strand, 41705947 - 41705861
Alignment:
| Q |
46 |
tctaactgcagatgactcttggcggtgtatacaccctgataagagttgaatcttgtatttagctgagggctattttggttcctctac |
132 |
Q |
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| T |
41705947 |
tctaattgcagatgactcttcgcagcgtatacatcctgaatagagttgaatcttgtattttaccgagggctattttggttcctctac |
41705861 |
T |
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