View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15596_high_1 (Length: 655)

Name: NF15596_high_1
Description: NF15596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15596_high_1
NF15596_high_1
[»] chr2 (24 HSPs)
chr2 (18-644)||(13961183-13961809)
chr2 (417-493)||(43658655-43658731)
chr2 (418-493)||(6336303-6336378)
chr2 (417-493)||(42430699-42430777)
chr2 (447-541)||(14871720-14871814)
chr2 (420-496)||(38821419-38821495)
chr2 (417-493)||(12498580-12498657)
chr2 (474-541)||(30220701-30220768)
chr2 (418-493)||(7084658-7084735)
chr2 (418-472)||(7367920-7367974)
chr2 (189-223)||(14385136-14385170)
chr2 (418-493)||(28245779-28245855)
chr2 (189-223)||(28539417-28539451)
chr2 (189-223)||(35550149-35550183)
chr2 (418-471)||(10833613-10833666)
chr2 (189-222)||(15803234-15803267)
chr2 (418-495)||(36587412-36587489)
chr2 (189-221)||(1270695-1270727)
chr2 (418-478)||(4061921-4061981)
chr2 (417-453)||(14328431-14328467)
chr2 (447-495)||(14871953-14872001)
chr2 (418-493)||(16799723-16799799)
chr2 (420-472)||(21611625-21611677)
chr2 (418-482)||(30546325-30546389)
[»] chr7 (21 HSPs)
chr7 (391-541)||(37832458-37832611)
chr7 (418-518)||(18227785-18227883)
chr7 (418-496)||(47448877-47448957)
chr7 (453-557)||(24680848-24680952)
chr7 (417-496)||(41650757-41650836)
chr7 (418-500)||(29461186-29461268)
chr7 (417-496)||(49128921-49129002)
chr7 (413-541)||(2230421-2230549)
chr7 (423-506)||(2300139-2300223)
chr7 (189-223)||(33872111-33872145)
chr7 (189-223)||(38505335-38505369)
chr7 (418-493)||(40854598-40854675)
chr7 (188-221)||(6746572-6746605)
chr7 (418-482)||(34757426-34757488)
chr7 (436-482)||(43482591-43482639)
chr7 (492-545)||(44816263-44816316)
chr7 (418-495)||(34978347-34978426)
chr7 (417-453)||(39155111-39155147)
chr7 (418-471)||(41399129-41399183)
chr7 (447-495)||(45420002-45420050)
chr7 (417-453)||(46095000-46095036)
[»] chr4 (22 HSPs)
chr4 (420-528)||(8457749-8457857)
chr4 (418-490)||(31559589-31559663)
chr4 (436-493)||(19748705-19748762)
chr4 (436-493)||(19791044-19791101)
chr4 (473-541)||(36158154-36158222)
chr4 (418-493)||(38792835-38792910)
chr4 (418-468)||(6520802-6520852)
chr4 (447-549)||(8810653-8810755)
chr4 (418-489)||(18568394-18568467)
chr4 (439-496)||(23092952-23093009)
chr4 (418-493)||(34363604-34363679)
chr4 (418-481)||(5249919-5249984)
chr4 (420-493)||(19165376-19165447)
chr4 (418-481)||(21617234-21617298)
chr4 (189-223)||(55509933-55509967)
chr4 (418-496)||(56557784-56557862)
chr4 (445-541)||(4914975-4915070)
chr4 (418-467)||(24045295-24045344)
chr4 (418-491)||(40693570-40693643)
chr4 (418-455)||(50980641-50980678)
chr4 (444-516)||(36395711-36395783)
chr4 (418-495)||(51577665-51577744)
[»] chr3 (19 HSPs)
chr3 (381-541)||(52564545-52564707)
chr3 (431-549)||(45006821-45006946)
chr3 (464-541)||(36505580-36505657)
chr3 (418-495)||(34456841-34456920)
chr3 (418-495)||(41443132-41443211)
chr3 (426-541)||(9311099-9311216)
chr3 (422-493)||(52485527-52485600)
chr3 (418-467)||(3648630-3648679)
chr3 (446-506)||(28770869-28770929)
chr3 (438-490)||(46574329-46574381)
chr3 (418-453)||(48353047-48353082)
chr3 (189-223)||(47359365-47359399)
chr3 (189-223)||(49183741-49183775)
chr3 (420-457)||(47742337-47742374)
chr3 (420-496)||(1340122-1340198)
chr3 (428-496)||(8503892-8503960)
chr3 (418-482)||(20080124-20080188)
chr3 (418-471)||(44813413-44813468)
chr3 (422-462)||(45753195-45753235)
[»] chr5 (19 HSPs)
chr5 (422-493)||(4088498-4088571)
chr5 (418-506)||(42225698-42225788)
chr5 (431-496)||(3109412-3109477)
chr5 (474-549)||(14323417-14323491)
chr5 (417-496)||(35075518-35075597)
chr5 (418-467)||(26686932-26686981)
chr5 (418-467)||(26956663-26956712)
chr5 (391-461)||(41865597-41865671)
chr5 (417-490)||(40829464-40829539)
chr5 (391-461)||(6420680-6420753)
chr5 (422-493)||(9168110-9168181)
chr5 (418-493)||(14277683-14277758)
chr5 (418-493)||(884492-884569)
chr5 (189-223)||(14570041-14570075)
chr5 (418-493)||(19952050-19952127)
chr5 (422-467)||(3564594-3564639)
chr5 (418-467)||(11148562-11148611)
chr5 (417-479)||(15953003-15953066)
chr5 (425-493)||(6596390-6596458)
[»] chr1 (27 HSPs)
chr1 (420-493)||(30570578-30570651)
chr1 (422-493)||(34768185-34768256)
chr1 (423-498)||(11597692-11597769)
chr1 (418-493)||(29877348-29877425)
chr1 (412-493)||(39466243-39466325)
chr1 (417-541)||(31433540-31433665)
chr1 (417-462)||(50884731-50884776)
chr1 (417-477)||(49020365-49020425)
chr1 (391-436)||(25962839-25962884)
chr1 (445-550)||(37454034-37454139)
chr1 (379-456)||(1690442-1690523)
chr1 (445-541)||(35848490-35848586)
chr1 (447-541)||(19442593-19442687)
chr1 (420-496)||(41062766-41062844)
chr1 (418-472)||(29359689-29359743)
chr1 (418-456)||(30536042-30536080)
chr1 (418-493)||(34817988-34818065)
chr1 (418-456)||(46758420-46758458)
chr1 (417-506)||(18639638-18639727)
chr1 (418-459)||(18982570-18982611)
chr1 (418-467)||(37685381-37685430)
chr1 (418-467)||(37700088-37700137)
chr1 (418-495)||(7919003-7919082)
chr1 (418-462)||(15059690-15059734)
chr1 (474-506)||(17135405-17135437)
chr1 (412-491)||(39443870-39443950)
chr1 (418-518)||(51436689-51436792)
[»] chr6 (13 HSPs)
chr6 (424-493)||(16328643-16328714)
chr6 (418-493)||(16337866-16337943)
chr6 (418-493)||(16352104-16352181)
chr6 (391-543)||(31413544-31413702)
chr6 (417-477)||(2060595-2060655)
chr6 (418-482)||(5522594-5522658)
chr6 (447-546)||(34851568-34851667)
chr6 (453-518)||(30565933-30565997)
chr6 (449-513)||(10375738-10375802)
chr6 (189-223)||(15615723-15615757)
chr6 (424-493)||(16336885-16336954)
chr6 (420-490)||(16367993-16368065)
chr6 (189-221)||(32222058-32222090)
[»] chr8 (22 HSPs)
chr8 (417-549)||(36820004-36820136)
chr8 (447-541)||(1248333-1248427)
chr8 (418-496)||(12284210-12284290)
chr8 (420-477)||(27854728-27854785)
chr8 (446-550)||(999146-999250)
chr8 (418-493)||(35067211-35067288)
chr8 (420-543)||(40517310-40517435)
chr8 (417-467)||(42768255-42768305)
chr8 (422-467)||(5842820-5842865)
chr8 (189-222)||(12506188-12506221)
chr8 (190-223)||(12595370-12595403)
chr8 (189-222)||(31305777-31305810)
chr8 (418-496)||(39211092-39211172)
chr8 (381-467)||(5740755-5740847)
chr8 (407-455)||(7331333-7331381)
chr8 (189-221)||(8228599-8228631)
chr8 (417-453)||(12655972-12656008)
chr8 (418-467)||(24798327-24798378)
chr8 (439-495)||(28772067-28772123)
chr8 (418-462)||(33605054-33605098)
chr8 (417-453)||(41639785-41639821)
chr8 (474-506)||(42032511-42032543)
[»] scaffold1086 (1 HSPs)
scaffold1086 (453-518)||(2363-2427)
[»] scaffold0007 (1 HSPs)
scaffold0007 (420-493)||(246713-246786)
[»] scaffold0128 (1 HSPs)
scaffold0128 (418-495)||(10987-11064)
[»] scaffold0119 (2 HSPs)
scaffold0119 (189-222)||(37177-37210)
scaffold0119 (189-221)||(30510-30542)
[»] scaffold0532 (1 HSPs)
scaffold0532 (418-479)||(11015-11077)


Alignment Details
Target: chr2 (Bit Score: 591; Significance: 0; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 18 - 644
Target Start/End: Complemental strand, 13961809 - 13961183
Alignment:
Q  18 tctcctacatgaatcttcaatgcagctaccgtgagaattggaatgaagatgatagtgaaagtatcccaaccaaaagaaccacttgaagccaaatattacc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13961809 tctcctacatgaatcttcaatgcagctaccgtgagaattggaatgaagatgatagtgaaagtatcccaaccaaaagaaccacttgaagccaaatattacc 13961710  T
Q  118 tgttacaagaaaatattatttaggtgatgaaggaaattcatgtatcaaaattattaatttatcatttatcgtttggagggtttatatgaaatcttcaaat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13961709 tgttacaagaaaatattatttaggtgatgaaggaaattcatgtatcaaaatcattaatttatcatttatcgtttggagggtttatatgaaatcttcaaat 13961610  T
Q  218 ttaatcaccatgatcataagcaccaagtgatcatagaccttttaaagattctgaacctaagctttataataaacgagtaaggtcgagttgaactttcaat 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13961609 ttaatcaccatgatcataagcaccaagtgatcatagaccttttaaagagtctgaacctaagctttataataaacgagtaaggtcgagttgaactttcaat 13961510  T
Q  318 gggctaaatcataagcccctctcgagtgacttgacttattcccaccattatcaacaacgtataaagagaaacaatatttatacaactactttgtgacaat 417  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  13961509 gggctaaatcataagcccctctgaagtgacttgacttattcccaccattatcaacaacatataaagagaaacaagatttatacaactactttgtgacaat 13961410  T
Q  418 tctctcatactcatattgtatttttactttctctctattgttttgcttttcgtgctaatacctacatttctttgtatatctttagttgtattataagttg 517  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13961409 tctctcatactcatattgtgtttttactttctctctattgttttgcttttcgtgctaataccttcatttctttgtatatctttagttgtattataagttg 13961310  T
Q  518 tttaaaaaatagttgttcaaataatatatctccatataaatatcaaaattaattaattagttatgtaagagtatgctcaatgtgttattgaccgaagtta 617  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13961309 tttaaaaaatagttgttcaaataatatatctccatataaatatctaaattaattaattagttatgtaagagtatgctcaatgtgttattgaccgaagtta 13961210  T
Q  618 tgagtattatccttaactttacctttg 644  Q
    |||||||||||||||||||||||||||    
T  13961209 tgagtattatccttaactttacctttg 13961183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 417 - 493
Target Start/End: Complemental strand, 43658731 - 43658655
Alignment:
Q  417 ttctctcatactcatattgtatttttactttctctctattgttttgcttttcgtgctaatacctacatttctttgta 493  Q
    |||||||||||| ||||| |||||||||||||||||| |||  ||| |||| |||||||||| ||| ||||||||||    
T  43658731 ttctctcatacttatattatatttttactttctctctgttgcattgatttttgtgctaatacatacttttctttgta 43658655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 418 - 493
Target Start/End: Original strand, 6336303 - 6336378
Alignment:
Q  418 tctctcatactcatattgtatttttactttctctctattgttttgcttttcgtgctaatacctacatttctttgta 493  Q
    ||||||||||||||||| |||||||| ||||||||||| | |||| |||| |||| || || ||| ||||||||||    
T  6336303 tctctcatactcatattatatttttattttctctctatcgctttggtttttgtgccaacacatacttttctttgta 6336378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 417 - 493
Target Start/End: Original strand, 42430699 - 42430777
Alignment:
Q  417 ttctctcatactcatattgtatttttactt--tctctctattgttttgcttttcgtgctaatacctacatttctttgta 493  Q
    |||||||||||||| ||| | |||||||||  |||||||||||||||| ||| ||||  ||||||||| ||||||||||    
T  42430699 ttctctcatactcacattatgtttttacttcctctctctattgttttggtttccgtgtcaatacctacttttctttgta 42430777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 447 - 541
Target Start/End: Original strand, 14871720 - 14871814
Alignment:
Q  447 tctctctattgttttgcttttcgtgctaatacctacatttctttgtatatctttagttgtattataagttgtttaaaaaatagttgttcaaataa 541  Q
    ||||||||||| |||| |||| |||  || || ||||||||||| ||||| |||||||||   |||||||||  ||||| |||||||||||||||    
T  14871720 tctctctattgctttgatttttgtgtcaagacatacatttctttctatatttttagttgtcccataagttgtacaaaaagtagttgttcaaataa 14871814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 420 - 496
Target Start/End: Original strand, 38821419 - 38821495
Alignment:
Q  420 tctcatactcatattgtatttttactttctctctattgttttgcttttcgtgctaatacctacatttctttgtatat 496  Q
    ||||||||||| ||||| ||||||| |||||||||||| |||| | || |||| |||||  | ||||||||||||||    
T  38821419 tctcatactcacattgtgtttttaccttctctctattgctttggtatttgtgccaatactcatatttctttgtatat 38821495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 493
Target Start/End: Complemental strand, 12498657 - 12498580
Alignment:
Q  417 ttctctcatactcatattgtatttttacttt--ctctctattgttttgcttttcgtgctaatacctacatttctttgta 493  Q
    |||||||||||||||||| | |||||| |||  ||||||||||| ||| ||||||||| ||||||||  ||||||||||    
T  12498657 ttctctcatactcatattat-tttttattttatctctctattgtcttggttttcgtgcaaatacctatttttctttgta 12498580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 474 - 541
Target Start/End: Complemental strand, 30220768 - 30220701
Alignment:
Q  474 aatacctacatttctttgtatatctttagttgtattataagttgtttaaaaaatagttgttcaaataa 541  Q
    ||||||||||||||||||||||||||  |||||   |||||||||   ||||||||| ||||||||||    
T  30220768 aatacctacatttctttgtatatcttgggttgttccataagttgtcctaaaaatagtggttcaaataa 30220701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 418 - 493
Target Start/End: Complemental strand, 7084735 - 7084658
Alignment:
Q  418 tctctcatactcatattgtatttttactttctc--tctattgttttgcttttcgtgctaatacctacatttctttgta 493  Q
    ||||||||||||||||| |||||||||||||||  ||||||| |||| |||| || | || || ||| ||||||||||    
T  7084735 tctctcatactcatattatatttttactttctctttctattgctttgatttttgtaccaacacatacttttctttgta 7084658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 418 - 472
Target Start/End: Original strand, 7367920 - 7367974
Alignment:
Q  418 tctctcatactcatattgtatttttactttctctctattgttttgcttttcgtgc 472  Q
    ||||||||||||| ||||| ||||||||||||||||||   ||||||||| ||||    
T  7367920 tctctcatactcacattgtgtttttactttctctctatgactttgctttttgtgc 7367974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 189 - 223
Target Start/End: Original strand, 14385136 - 14385170
Alignment:
Q  189 tttggagggtttatatgaaatcttcaaatttaatc 223  Q
    ||||||||||||| |||||||||||||||||||||    
T  14385136 tttggagggtttacatgaaatcttcaaatttaatc 14385170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 418 - 493
Target Start/End: Original strand, 28245779 - 28245855
Alignment:
Q  418 tctctcatactcatattgtatttttacttt--ctctctattgttttgcttttcgtgctaatacctacatttctttgta 493  Q
    ||||||||||||| ||| | ||||||||||  |||||||||| |||| ||||||||| ||||||||  ||||||||||    
T  28245779 tctctcatactcacattat-tttttactttatctctctattgctttggttttcgtgcaaatacctatttttctttgta 28245855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 189 - 223
Target Start/End: Complemental strand, 28539451 - 28539417
Alignment:
Q  189 tttggagggtttatatgaaatcttcaaatttaatc 223  Q
    ||||||||||||||||||| |||||||||||||||    
T  28539451 tttggagggtttatatgaattcttcaaatttaatc 28539417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 189 - 223
Target Start/End: Complemental strand, 35550183 - 35550149
Alignment:
Q  189 tttggagggtttatatgaaatcttcaaatttaatc 223  Q
    ||||||||||||||||||| |||||||||||||||    
T  35550183 tttggagggtttatatgaattcttcaaatttaatc 35550149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 471
Target Start/End: Complemental strand, 10833666 - 10833613
Alignment:
Q  418 tctctcatactcatattgtatttttactttctctctattgttttgcttttcgtg 471  Q
    ||||||||||||| ||| | |||||||||||||||||||| |||| ||| ||||    
T  10833666 tctctcatactcacattatttttttactttctctctattgctttggtttccgtg 10833613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 222
Target Start/End: Original strand, 15803234 - 15803267
Alignment:
Q  189 tttggagggtttatatgaaatcttcaaatttaat 222  Q
    ||||||||||||||||||| ||||||||||||||    
T  15803234 tttggagggtttatatgaattcttcaaatttaat 15803267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 495
Target Start/End: Complemental strand, 36587489 - 36587412
Alignment:
Q  418 tctctcatactcatattgtatttttactttctctctattgttttgcttttcgtgctaatacctacatttctttgtata 495  Q
    ||||||||||||| ||| |  ||||||| ||||||||||| |||| |||| |||| | || ||| |||||||||||||    
T  36587489 tctctcatactcacattatcattttactctctctctattgctttgatttttgtgccactatctaaatttctttgtata 36587412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 189 - 221
Target Start/End: Complemental strand, 1270727 - 1270695
Alignment:
Q  189 tttggagggtttatatgaaatcttcaaatttaa 221  Q
    ||||||||||||||||||| |||||||||||||    
T  1270727 tttggagggtttatatgaattcttcaaatttaa 1270695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 418 - 478
Target Start/End: Complemental strand, 4061981 - 4061921
Alignment:
Q  418 tctctcatactcatattgtatttttacttt--ctctctattgttttgcttttcgtgctaatac 478  Q
    |||||||||||||||||  |||||||||||  ||||||||||||||| ||| ||||| |||||    
T  4061981 tctctcatactcatatt--atttttactttatctctctattgttttggtttccgtgcaaatac 4061921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 417 - 453
Target Start/End: Original strand, 14328431 - 14328467
Alignment:
Q  417 ttctctcatactcatattgtatttttactttctctct 453  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  14328431 ttctctcatactcacattatatttttactttctctct 14328467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 447 - 495
Target Start/End: Original strand, 14871953 - 14872001
Alignment:
Q  447 tctctctattgttttgcttttcgtgctaatacctacatttctttgtata 495  Q
    |||||||||||||||| |||| |||| | |||||| |||||||||||||    
T  14871953 tctctctattgttttgatttttgtgccactacctaaatttctttgtata 14872001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 418 - 493
Target Start/End: Original strand, 16799723 - 16799799
Alignment:
Q  418 tctctcatactcatattgtatttttactttctctctattgt-tttgcttttcgtgctaatacctacatttctttgta 493  Q
    ||||||||||||||||| |||||||| ||||||||| || |  ||| |||| ||||||| || ||| ||||||||||    
T  16799723 tctctcatactcatattatatttttattttctctctcttttccttgatttttgtgctaacacgtacttttctttgta 16799799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 420 - 472
Target Start/End: Complemental strand, 21611677 - 21611625
Alignment:
Q  420 tctcatactcatattgtatttttactttctctctattgttttgcttttcgtgc 472  Q
    ||||||| ||||||| | |||||||||||||||||||| |||| |||| ||||    
T  21611677 tctcatattcatattatctttttactttctctctattgctttgatttttgtgc 21611625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 418 - 482
Target Start/End: Complemental strand, 30546389 - 30546325
Alignment:
Q  418 tctctcatactcatattgtatttttacttt--ctctctattgttttgcttttcgtgctaatacctac 482  Q
    ||||||||| |||||||  |||||||||||  ||||||||||||||| ||||| ||| |||||||||    
T  30546389 tctctcatattcatatt--atttttactttatctctctattgttttggttttcatgcaaatacctac 30546325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 7e-17; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 391 - 541
Target Start/End: Original strand, 37832458 - 37832611
Alignment:
Q  391 atatttatacaactactttgtgacaa----ttctctcatactcatattgtatttttactttctctctattgttttgcttttcgtgctaatacctacattt 486  Q
    |||||| |||||||| ||||||||||    |||||||||||||| ||||| || ||| ||||||||| |  |  || ||||||||  ||||||||||||     
T  37832458 atatttgtacaactattttgtgacaactctttctctcatactcacattgtgttcttattttctctctctattgctggttttcgtgtcaatacctacatt- 37832556  T
Q  487 ctttgtatatctttagttgtattataagttgtttaaaaaatagttgttcaaataa 541  Q
    |||||||||||||| |||||  | || ||||| |||||||| |||||||||||||    
T  37832557 ctttgtatatctttggttgtcctgtaggttgtctaaaaaatggttgttcaaataa 37832611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 418 - 518
Target Start/End: Complemental strand, 18227883 - 18227785
Alignment:
Q  418 tctctcatactcatattgtatttttactttctctctattgttttgcttttcgtgctaatacctacatttctttgtatatctttagttgtattataagttg 517  Q
    |||||||||||| |||| | ||||||||  ||||| ||||||||| ||||||||  ||||| ||||||  ||| ||||| ||||||||| ||||||||||    
T  18227883 tctctcatactcttattatgtttttact--ctctccattgttttgattttcgtgtcaatacttacattattttttatatttttagttgttttataagttg 18227786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 418 - 496
Target Start/End: Original strand, 47448877 - 47448957
Alignment:
Q  418 tctctcatactcatattgtatttttactttc--tctctattgttttgcttttcgtgctaatacctacatttctttgtatat 496  Q
    ||||||||||||| ||||| |||||||||||  ||||||||| |||| |||| |||| | |||||| ||||||||||||||    
T  47448877 tctctcatactcacattgtgtttttactttctttctctattgctttggtttttgtgccactacctaaatttctttgtatat 47448957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 453 - 557
Target Start/End: Complemental strand, 24680952 - 24680848
Alignment:
Q  453 tattgttttgcttttcgtgctaatacctacatttctttgtatatctttagttgtattataagttgtttaaaaaatagttgttcaaataatatatctccat 552  Q
    |||||||||| ||||||||  || || ||||||||||| ||||| ||| ||||| | ||||||| | |||||| | ||||||||||||| ||| ||| ||    
T  24680952 tattgttttggttttcgtgtcaagacatacatttctttctatattttttgttgtctcataagttatctaaaaagtggttgttcaaataacatacctcaat 24680853  T
Q  553 ataaa 557  Q
    |||||    
T  24680852 ataaa 24680848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 417 - 496
Target Start/End: Original strand, 41650757 - 41650836
Alignment:
Q  417 ttctctcatactcatattgtatttttactttctctctattgttttgcttttcgtgctaatacctacatttctttgtatat 496  Q
    |||||||||||||| ||| | ||||||||||||||||||||||||| |||| |||  |||||  |  |||||||||||||    
T  41650757 ttctctcatactcacattttgtttttactttctctctattgttttggtttttgtgtcaatactcatgtttctttgtatat 41650836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 418 - 500
Target Start/End: Complemental strand, 29461268 - 29461186
Alignment:
Q  418 tctctcatactcatattgtatttttactttctctctattgttttgcttttcgtgctaatacctacatttctttgtatatcttt 500  Q
    ||||||||| || ||||||||||||||| ||||| | |||||||| |||| |||  ||||| ||||||||| ||| |||||||    
T  29461268 tctctcatattcttattgtatttttactatctctattttgttttgatttttgtgtcaatacttacatttctatgtgtatcttt 29461186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 417 - 496
Target Start/End: Complemental strand, 49129002 - 49128921
Alignment:
Q  417 ttctctcatactcatattgtatttttactttctctc--tattgttttgcttttcgtgctaatacctacatttctttgtatat 496  Q
    |||||||||||||| ||||| |||||||||||||||  || || |||| |||| ||| |||| |||| ||||||||||||||    
T  49129002 ttctctcatactcacattgtgtttttactttctctctttactgctttgatttttgtgttaatgcctatatttctttgtatat 49128921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 413 - 541
Target Start/End: Original strand, 2230421 - 2230549
Alignment:
Q  413 acaattctctcatactcatattgtatttttactttctctctattgttttgcttttcgtgctaatacctacatttctttgtatatctttagttgtattata 512  Q
    |||||| |||||| ||| |||| | ||||||||   ||||||||| |||  |||||||   ||||||||||||||||||||||| |||  || |  ||||    
T  2230421 acaattatctcatgctcttattatgtttttactcaatctctattgctttaattttcgtaacaatacctacatttctttgtatatatttgattatcatata 2230520  T
Q  513 agttgtttaaaaaatagttgttcaaataa 541  Q
    ||||||| |||||||  || |||||||||    
T  2230521 agttgttcaaaaaatgattattcaaataa 2230549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 423 - 506
Target Start/End: Original strand, 2300139 - 2300223
Alignment:
Q  423 catactcatattgtatttttactt--tctctctattgttttgcttttcgtgctaatacctacatttctttgtatatctttagttgt 506  Q
    |||||||||||||| |||||| ||  ||||||||||||||||  ||| |||  |||||||| |||||||| ||||| |||||||||    
T  2300139 catactcatattgtgtttttattttctctctctattgttttgaattttgtgtgaatacctatatttctttctatat-tttagttgt 2300223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 189 - 223
Target Start/End: Complemental strand, 33872145 - 33872111
Alignment:
Q  189 tttggagggtttatatgaaatcttcaaatttaatc 223  Q
    ||||||||||||||||||| |||||||||||||||    
T  33872145 tttggagggtttatatgaattcttcaaatttaatc 33872111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 189 - 223
Target Start/End: Complemental strand, 38505369 - 38505335
Alignment:
Q  189 tttggagggtttatatgaaatcttcaaatttaatc 223  Q
    ||||||||||||||||||| |||||||||||||||    
T  38505369 tttggagggtttatatgaattcttcaaatttaatc 38505335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 418 - 493
Target Start/End: Complemental strand, 40854675 - 40854598
Alignment:
Q  418 tctctcatactcatattgtatttttactttct--ctctattgttttgcttttcgtgctaatacctacatttctttgta 493  Q
    ||||||||||||| ||| ||||||||||||||  |||||||| |||| |||| |||| || || ||| ||||||||||    
T  40854675 tctctcatactcacattatatttttactttctctctctattgctttgatttttgtgccaacacatacttttctttgta 40854598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 6746605 - 6746572
Alignment:
Q  188 gtttggagggtttatatgaaatcttcaaatttaa 221  Q
    |||||||||||||||||||| |||||||||||||    
T  6746605 gtttggagggtttatatgaattcttcaaatttaa 6746572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 482
Target Start/End: Complemental strand, 34757488 - 34757426
Alignment:
Q  418 tctctcatactcatattgtatttttactttctctctattgttttgcttttcgtgctaatacctac 482  Q
    |||||||||||||||||  ||||||| ||| |||||||||||||| |||  |||| |||||||||    
T  34757488 tctctcatactcatatt--atttttaatttatctctattgttttggtttcagtgcaaatacctac 34757426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 482
Target Start/End: Original strand, 43482591 - 43482639
Alignment:
Q  436 tatttttacttt--ctctctattgttttgcttttcgtgctaatacctac 482  Q
    ||||||||||||  ||||||||||||||| ||||||||| |||||||||    
T  43482591 tatttttactttatctctctattgttttggttttcgtgcaaatacctac 43482639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 492 - 545
Target Start/End: Original strand, 44816263 - 44816316
Alignment:
Q  492 tatatctttagttgtattataagttgtttaaaaaatagttgttcaaataatata 545  Q
    ||||| ||||||| | || ||| |||| ||||||||||||||||||||||||||    
T  44816263 tatatatttagttattttgtaatttgtctaaaaaatagttgttcaaataatata 44816316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 418 - 495
Target Start/End: Original strand, 34978347 - 34978426
Alignment:
Q  418 tctctcatactcatattgtatttttactttctc--tctattgttttgcttttcgtgctaatacctacatttctttgtata 495  Q
    ||||||||||||| ||| |  ||||||||||||  ||||||| |||| |||| |||| | |||||| |||||||||||||    
T  34978347 tctctcatactcacattatccttttactttctctctctattgctttgttttttgtgccactacctaaatttctttgtata 34978426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 417 - 453
Target Start/End: Complemental strand, 39155147 - 39155111
Alignment:
Q  417 ttctctcatactcatattgtatttttactttctctct 453  Q
    |||||||||||||||||| | ||||||||||||||||    
T  39155147 ttctctcatactcatattatgtttttactttctctct 39155111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 418 - 471
Target Start/End: Complemental strand, 41399183 - 41399129
Alignment:
Q  418 tctctcatactcatattgtatttttacttt--ctctctattgttttgcttttcgtg 471  Q
    ||||||||||||||||| | ||||||||||  ||||||||||||||| ||||||||    
T  41399183 tctctcatactcatattat-tttttactttatctctctattgttttggttttcgtg 41399129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 447 - 495
Target Start/End: Complemental strand, 45420050 - 45420002
Alignment:
Q  447 tctctctattgttttgcttttcgtgctaatacctacatttctttgtata 495  Q
    |||||||||||||||| |||| |||| | |||||| |||||||||||||    
T  45420050 tctctctattgttttgatttttgtgccactacctaaatttctttgtata 45420002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 417 - 453
Target Start/End: Original strand, 46095000 - 46095036
Alignment:
Q  417 ttctctcatactcatattgtatttttactttctctct 453  Q
    |||||||||||||||||| |||||||| |||||||||    
T  46095000 ttctctcatactcatattatatttttattttctctct 46095036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 420 - 528
Target Start/End: Original strand, 8457749 - 8457857
Alignment:
Q  420 tctcatactcatattgtatttttactttctctctattgttttgcttttcgtgctaatacctacatttctttgtatatctttagttgtattataagttgtt 519  Q
    ||||||||||| ||||| || ||||| ||||||||||| | |  ||||||||||||| |||||||||||||||||| |||| |||||   |||||||||     
T  8457749 tctcatactcacattgtgttcttactctctctctattgctctagttttcgtgctaatgcctacatttctttgtatacctttggttgtcccataagttgtc 8457848  T
Q  520 taaaaaata 528  Q
    | |||||||    
T  8457849 tcaaaaata 8457857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 418 - 490
Target Start/End: Original strand, 31559589 - 31559663
Alignment:
Q  418 tctctcatactcatattgtatttttactttctc--tctattgttttgcttttcgtgctaatacctacatttcttt 490  Q
    ||||||||||||| ||| |||||||||||||||  |||||||||||| |||||||| |||||||||| |||||||    
T  31559589 tctctcatactcacattatatttttactttctctctctattgttttggttttcgtgttaatacctacttttcttt 31559663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 436 - 493
Target Start/End: Original strand, 19748705 - 19748762
Alignment:
Q  436 tatttttactttctctctattgttttgcttttcgtgctaatacctacatttctttgta 493  Q
    |||||||||||||||||| |||||||| |||||||| |||||||||  ||||||||||    
T  19748705 tatttttactttctctctgttgttttggttttcgtgttaatacctatttttctttgta 19748762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 436 - 493
Target Start/End: Complemental strand, 19791101 - 19791044
Alignment:
Q  436 tatttttactttctctctattgttttgcttttcgtgctaatacctacatttctttgta 493  Q
    |||||||||||||||||| |||||||| |||||||| |||||||||  ||||||||||    
T  19791101 tatttttactttctctctgttgttttggttttcgtgttaatacctatttttctttgta 19791044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 473 - 541
Target Start/End: Original strand, 36158154 - 36158222
Alignment:
Q  473 taatacctacatttctttgtatatctttagttgtattataagttgtttaaaaaatagttgttcaaataa 541  Q
    |||||||||| ||| ||||||||| ||| ||||| |||||||||  | |||||||||||||||||||||    
T  36158154 taatacctacctttatttgtatatatttggttgtcttataagttaatcaaaaaatagttgttcaaataa 36158222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 418 - 493
Target Start/End: Complemental strand, 38792910 - 38792835
Alignment:
Q  418 tctctcatactcatattgtatttttactttctctctattgttttgcttttcgtgctaatacctacatttctttgta 493  Q
    ||||||||||||| ||| |||||||||||||||||||||| |||| |||| || | || || ||| ||||||||||    
T  38792910 tctctcatactcacattatatttttactttctctctattgctttgatttttgtaccaacacatacttttctttgta 38792835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 418 - 468
Target Start/End: Complemental strand, 6520852 - 6520802
Alignment:
Q  418 tctctcatactcatattgtatttttactttctctctattgttttgcttttc 468  Q
    ||||||||||||| ||| | ||||||||||||||||||||||||| |||||    
T  6520852 tctctcatactcacattatgtttttactttctctctattgttttggttttc 6520802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 447 - 549
Target Start/End: Original strand, 8810653 - 8810755
Alignment:
Q  447 tctctctattgttttgcttttcgtgctaatacctacatttctttgtatatctttagttgtattataagttgtttaaaaaatagttgttcaaataatatat 546  Q
    |||||||||||||||| ||||||||  || |  ||||||||||| |||||  || ||||| | |||||||||  ||||| | ||||||||||||| ||||    
T  8810653 tctctctattgttttgattttcgtgtcaagatatacatttctttctatattcttggttgtctcataagttgtacaaaaagtggttgttcaaataacatat 8810752  T
Q  547 ctc 549  Q
    |||    
T  8810753 ctc 8810755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 418 - 489
Target Start/End: Complemental strand, 18568467 - 18568394
Alignment:
Q  418 tctctcatactcatattgtatttttac--tttctctctattgttttgcttttcgtgctaatacctacatttctt 489  Q
    ||||| ||||||||||| || ||||||  |||||||||||||||||| ||||||||  ||||| ||||||||||    
T  18568467 tctcttatactcatattatacttttacattttctctctattgttttggttttcgtgtcaatacatacatttctt 18568394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 439 - 496
Target Start/End: Original strand, 23092952 - 23093009
Alignment:
Q  439 ttttactttctctctattgttttgcttttcgtgctaatacctacatttctttgtatat 496  Q
    |||||||||||||||||||||||  |||| |||  |||| ||||||||||||||||||    
T  23092952 ttttactttctctctattgtttttgtttttgtgtcaataactacatttctttgtatat 23093009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 493
Target Start/End: Original strand, 34363604 - 34363679
Alignment:
Q  418 tctctcatactcatattgtatttttactttctctctattgttttgcttttcgtgctaatacctacatttctttgta 493  Q
    ||||||||||||| ||| |||||| ||||| ||| ||||||| ||  |||||||| ||||| ||| ||||||||||    
T  34363604 tctctcatactcacattatattttcactttatctatattgttatgactttcgtgccaatacatacttttctttgta 34363679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 418 - 481
Target Start/End: Original strand, 5249919 - 5249984
Alignment:
Q  418 tctctcatactcatattgtatttttactt--tctctctattgttttgcttttcgtgctaataccta 481  Q
    ||||||||||||| ||| | |||||||||  |||||||||||||||| ||||||||  ||||||||    
T  5249919 tctctcatactcacattatgtttttactttctctctctattgttttggttttcgtgtcaataccta 5249984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 420 - 493
Target Start/End: Complemental strand, 19165447 - 19165376
Alignment:
Q  420 tctcatactcatattgtatttttactttctctctattgttttgcttttcgtgctaatacctacatttctttgta 493  Q
    ||||||||||| ||| ||||||||||  ||||||||||||||| |||| |||| ||||| ||  ||||||||||    
T  19165447 tctcatactcacattatatttttact--ctctctattgttttggtttttgtgccaatacatatttttctttgta 19165376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 418 - 481
Target Start/End: Original strand, 21617234 - 21617298
Alignment:
Q  418 tctctcatactcatattgtatttttacttt--ctctctattgttttgcttttcgtgctaataccta 481  Q
    ||||||||||||| ||| | ||||||||||  ||||||||||||||| ||||||||| ||||||||    
T  21617234 tctctcatactcacattat-tttttactttatctctctattgttttgattttcgtgcaaataccta 21617298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 189 - 223
Target Start/End: Original strand, 55509933 - 55509967
Alignment:
Q  189 tttggagggtttatatgaaatcttcaaatttaatc 223  Q
    ||||||||||||||||||| |||||||||||||||    
T  55509933 tttggagggtttatatgaattcttcaaatttaatc 55509967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 418 - 496
Target Start/End: Original strand, 56557784 - 56557862
Alignment:
Q  418 tctctcatactcatattgtatttttactttctctctattgttttgcttttcgtgctaatacctacatttctttgtatat 496  Q
    ||||||||||||| ||||| ||||||| |||||||||||| |||| | || |||| |||||  | |||||||| |||||    
T  56557784 tctctcatactcacattgtgtttttaccttctctctattgctttggtatttgtgccaatactcatatttctttctatat 56557862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 541
Target Start/End: Original strand, 4914975 - 4915070
Alignment:
Q  445 tttctctctattgttttgcttttcgtgctaatacctacatttctttgtatatctttagttgtattataagttgtttaa-aaaatagttgttcaaataa 541  Q
    ||||||||||||||||||  |||||| || | |||||||||||||| ||||| |||||||||  || || || ||||| ||||| |||||||||||||    
T  4914975 tttctctctattgttttg-gtttcgtacttagacctacatttctttatatat-tttagttgtcctacaaattatttaagaaaatggttgttcaaataa 4915070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 467
Target Start/End: Original strand, 24045295 - 24045344
Alignment:
Q  418 tctctcatactcatattgtatttttactttctctctattgttttgctttt 467  Q
    ||||||||||||| ||| | |||||||||||||||||||| |||| ||||    
T  24045295 tctctcatactcacattatgtttttactttctctctattgctttgatttt 24045344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 491
Target Start/End: Complemental strand, 40693643 - 40693570
Alignment:
Q  418 tctctcatactcatattgtatttttactttctctctattgttttgcttttcgtgctaatacctacatttctttg 491  Q
    ||||||||||||| ||| | |||||||||||||||||||| |||  |||| |||| ||||| | | ||||||||    
T  40693643 tctctcatactcacattatgtttttactttctctctattgctttaatttttgtgccaatacattcttttctttg 40693570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 455
Target Start/End: Original strand, 50980641 - 50980678
Alignment:
Q  418 tctctcatactcatattgtatttttactttctctctat 455  Q
    ||||||||||||| ||| ||||||||||||||||||||    
T  50980641 tctctcatactcacattatatttttactttctctctat 50980678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 444 - 516
Target Start/End: Complemental strand, 36395783 - 36395711
Alignment:
Q  444 ctttctctctattgttttgcttttcgtgctaatacctacatttctttgtatatctttagttgtattataagtt 516  Q
    |||||||| |||||||||| ||||||  | |||| ||||||||||||||||| | || ||||| | |||||||    
T  36395783 ctttctctttattgttttggttttcgaacaaatatctacatttctttgtatagcattggttgtttcataagtt 36395711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 418 - 495
Target Start/End: Original strand, 51577665 - 51577744
Alignment:
Q  418 tctctcatactcatattgtatttttactt--tctctctattgttttgcttttcgtgctaatacctacatttctttgtata 495  Q
    ||||||||||||||||| |  ||||||||  ||||||||||| |||| |||| |||| | |||||| |||||||| ||||    
T  51577665 tctctcatactcatattatcattttactttctctctctattgctttgatttttgtgccactacctaaatttctttatata 51577744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 381 - 541
Target Start/End: Complemental strand, 52564707 - 52564545
Alignment:
Q  381 aagagaaacaatatttatacaactactttgtgacaatt--ctctcatactcatattgtatttttactttctctctattgttttgcttttcgtgctaatac 478  Q
    ||||||||  |||||| |||||| | ||||||||||||  |||||||||||| ||| | |||||||||  |||| |||| |||| |||| |||| |||||    
T  52564707 aagagaaatgatatttgtacaaccattttgtgacaattttctctcatactcacattatgtttttacttcttctccattgctttggttttagtgccaatac 52564608  T
Q  479 ctacatttctttgtatatctttagttgtattataagttgtttaaaaaatagttgttcaaataa 541  Q
    |||| |||||||||| |||| | |||||   |||||||||   | |||| |||||||||||||    
T  52564607 ctacttttctttgtaaatctatggttgtcccataagttgtcatagaaatggttgttcaaataa 52564545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 431 - 549
Target Start/End: Original strand, 45006821 - 45006946
Alignment:
Q  431 tattgtatttttactttctctctattgttttgcttttcgtgctaatacctac------atttctttgtatatctttagttgtattataag-ttgtttaaa 523  Q
    ||||||||||||||| ||| |||||||||||| ||||| || |||||| |||      |||||||||||| | |||  |||| | ||||| || ||||||    
T  45006821 tattgtatttttactctctatctattgttttgattttcttgttaatacatacatttctatttctttgtattttttttattgtctcataagtttttttaaa 45006920  T
Q  524 aaatagttgttcaaataatatatctc 549  Q
    |||||||||||||||||| |||||||    
T  45006921 aaatagttgttcaaataacatatctc 45006946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 464 - 541
Target Start/End: Complemental strand, 36505657 - 36505580
Alignment:
Q  464 ttttcgtgctaatacctacatttctttgtatatctttagttgtattataagttgtttaaaaaatagttgttcaaataa 541  Q
    ||||| || |||||||||||||||||||| || ||||||||||   ||||||||||| |||||| |||||| ||||||    
T  36505657 ttttcatgttaatacctacatttctttgtctaactttagttgttccataagttgttttaaaaatggttgtttaaataa 36505580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 418 - 495
Target Start/End: Original strand, 34456841 - 34456920
Alignment:
Q  418 tctctcatactcatattgtatttttactt--tctctctattgttttgcttttcgtgctaatacctacatttctttgtata 495  Q
    ||||||||||||||||| | |||||||||  ||||||||||| |||  |||| |||| |||||||| |||||||||||||    
T  34456841 tctctcatactcatattatctttttactttctctctctattgctttaatttttgtgccaatacctaaatttctttgtata 34456920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 418 - 495
Target Start/End: Complemental strand, 41443211 - 41443132
Alignment:
Q  418 tctctcatactcatattgtatttttactttctctct--attgttttgcttttcgtgctaatacctacatttctttgtata 495  Q
    ||||||||||||| ||| |  |||||||||||||||  ||||||||| |||| |||| |||||||| |||||||||||||    
T  41443211 tctctcatactcacattattcttttactttctctctctattgttttgatttttgtgcaaatacctaaatttctttgtata 41443132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 426 - 541
Target Start/End: Original strand, 9311099 - 9311216
Alignment:
Q  426 actcatattgtatttttactttctctc--tattgttttgcttttcgtgctaatacctacatttctttgtatatctttagttgtattataagttgtttaaa 523  Q
    ||||||||| | |||||||||||||||  |||||||||| ||||||||  ||||||||| ||||||| || || | | |||||   |||||||||| ||     
T  9311099 actcatattatgtttttactttctctccctattgttttggttttcgtgtcaatacctacttttctttttaaatatatggttgtcccataagttgttcaac 9311198  T
Q  524 aaatagttgttcaaataa 541  Q
    ||||  ||||||||||||    
T  9311199 aaatgattgttcaaataa 9311216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 493
Target Start/End: Original strand, 52485527 - 52485600
Alignment:
Q  422 tcatactcatattgtatttttacttt--ctctctattgttttgcttttcgtgctaatacctacatttctttgta 493  Q
    ||||||||| ||| ||||||||||||  |||||||||| |||| ||||||||| ||||| ||| ||||||||||    
T  52485527 tcatactcacattatatttttactttatctctctattgctttggttttcgtgccaatacatacttttctttgta 52485600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 418 - 467
Target Start/End: Original strand, 3648630 - 3648679
Alignment:
Q  418 tctctcatactcatattgtatttttactttctctctattgttttgctttt 467  Q
    ||||||||| ||| |||||||||||||||| |||||||||||||| ||||    
T  3648630 tctctcatattcacattgtatttttactttatctctattgttttgatttt 3648679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 446 - 506
Target Start/End: Original strand, 28770869 - 28770929
Alignment:
Q  446 ttctctctattgttttgcttttcgtgctaatacctacatttctttgtatatctttagttgt 506  Q
    |||||| |||||||||| |||||||  |||||  |||||||||||||| ||||||||||||    
T  28770869 ttctctttattgttttgattttcgtattaatatttacatttctttgtacatctttagttgt 28770929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 438 - 490
Target Start/End: Original strand, 46574329 - 46574381
Alignment:
Q  438 tttttactttctctctattgttttgcttttcgtgctaatacctacatttcttt 490  Q
    ||||||||||||||||||||||||| ||| ||||  ||||||||| |||||||    
T  46574329 tttttactttctctctattgttttggtttccgtgtcaatacctacttttcttt 46574381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 453
Target Start/End: Original strand, 48353047 - 48353082
Alignment:
Q  418 tctctcatactcatattgtatttttactttctctct 453  Q
    ||||||||||||||||| ||||||||||||||||||    
T  48353047 tctctcatactcatattatatttttactttctctct 48353082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 189 - 223
Target Start/End: Original strand, 47359365 - 47359399
Alignment:
Q  189 tttggagggtttatatgaaatcttcaaatttaatc 223  Q
    ||||||||||||||||||| |||||||||||||||    
T  47359365 tttggagggtttatatgaattcttcaaatttaatc 47359399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 189 - 223
Target Start/End: Original strand, 49183741 - 49183775
Alignment:
Q  189 tttggagggtttatatgaaatcttcaaatttaatc 223  Q
    ||||||||||||||||||| |||||||||||||||    
T  49183741 tttggagggtttatatgaattcttcaaatttaatc 49183775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 457
Target Start/End: Original strand, 47742337 - 47742374
Alignment:
Q  420 tctcatactcatattgtatttttactttctctctattg 457  Q
    ||||||||||||||| |||||||| |||||||||||||    
T  47742337 tctcatactcatattatatttttaatttctctctattg 47742374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 420 - 496
Target Start/End: Complemental strand, 1340198 - 1340122
Alignment:
Q  420 tctcatactcatattgtatttttactttctctctattgttttgcttttcgtgctaatacctacatttctttgtatat 496  Q
    ||||||||||| ||||| |||| | ||||||||||||| |||| |||| |||  || | |||||||||||| |||||    
T  1340198 tctcatactcacattgtgttttcattttctctctattgctttgatttttgtgtcaagatctacatttctttatatat 1340122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 428 - 496
Target Start/End: Complemental strand, 8503960 - 8503892
Alignment:
Q  428 tcatattgtatttttactttctctctattgttttgcttttcgtgctaatacctacatttctttgtatat 496  Q
    ||||| ||| || ||||||| ||| ||||| |||| ||||| ||| |||| ||||||||||||||||||    
T  8503960 tcataatgtgttcttactttttctttattgatttgtttttcatgccaatagctacatttctttgtatat 8503892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 418 - 482
Target Start/End: Original strand, 20080124 - 20080188
Alignment:
Q  418 tctctcatactcatattgtatttttacttt--ctctctattgttttgcttttcgtgctaatacctac 482  Q
    ||||||||||||| |||  |||||||||||  ||||||||||||||| ||| ||||| |||||||||    
T  20080124 tctctcatactcacatt--atttttactttatctctctattgttttggtttccgtgcaaatacctac 20080188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 418 - 471
Target Start/End: Complemental strand, 44813468 - 44813413
Alignment:
Q  418 tctctcatactcatattgtatttttactt--tctctctattgttttgcttttcgtg 471  Q
    ||||||||||||| ||| |||||||||||  ||||||||||| |||| ||||||||    
T  44813468 tctctcatactcacattatatttttactttatctctctattgctttggttttcgtg 44813413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 422 - 462
Target Start/End: Original strand, 45753195 - 45753235
Alignment:
Q  422 tcatactcatattgtatttttactttctctctattgttttg 462  Q
    |||||||||| |||| |||||||||||||||||||| ||||    
T  45753195 tcatactcatgttgtgtttttactttctctctattgctttg 45753235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 422 - 493
Target Start/End: Original strand, 4088498 - 4088571
Alignment:
Q  422 tcatactcatattgtatttttactttct--ctctattgttttgcttttcgtgctaatacctacatttctttgta 493  Q
    ||||||||| ||| ||||||||||||||  |||||||| |||| ||||||||||||||| ||||||||||||||    
T  4088498 tcatactcacattatatttttactttctttctctattgctttggttttcgtgctaatacatacatttctttgta 4088571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 418 - 506
Target Start/End: Complemental strand, 42225788 - 42225698
Alignment:
Q  418 tctctcatactcatattgtatttttactttctctct--attgttttgcttttcgtgctaatacctacatttctttgtatatctttagttgt 506  Q
    ||||||||||||  ||||| || |||||||||||||  |||| | || ||||||||| | ||||||||||||||||||||||||| |||||    
T  42225788 tctctcatactctcattgtgttcttactttctctctctattgctctggttttcgtgccactacctacatttctttgtatatctttggttgt 42225698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 431 - 496
Target Start/End: Complemental strand, 3109477 - 3109412
Alignment:
Q  431 tattgtatttttactttctctctattgttttgcttttcgtgctaatacctacatttctttgtatat 496  Q
    ||||||||||||||||||||||||| |||||| |||| | |  ||||||||||||||||| |||||    
T  3109477 tattgtatttttactttctctctatggttttgatttttgcgtcaatacctacatttctttatatat 3109412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 474 - 549
Target Start/End: Complemental strand, 14323491 - 14323417
Alignment:
Q  474 aatacctacatttctttgtatatctttagttgtattataagttgtttaaaaaatagttgttcaaataatatatctc 549  Q
    |||||||| ||||||||||  ||||| ||||||  ||||||||||  ||||||||||||||||||||| |||||||    
T  14323491 aatacctatatttctttgtg-atcttaagttgtcctataagttgtccaaaaaatagttgttcaaataacatatctc 14323417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 417 - 496
Target Start/End: Complemental strand, 35075597 - 35075518
Alignment:
Q  417 ttctctcatactcatattgtatttttactttctctctattgttttgcttttcgtgctaatacctacatttctttgtatat 496  Q
    |||||||||||||| ||| |||||||| ||||||||||||| |||| |||| || | |||| ||| |||| |||||||||    
T  35075597 ttctctcatactcacattatatttttattttctctctattgctttgatttttgtaccaatatctaaatttgtttgtatat 35075518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 418 - 467
Target Start/End: Original strand, 26686932 - 26686981
Alignment:
Q  418 tctctcatactcatattgtatttttactttctctctattgttttgctttt 467  Q
    ||||||||| ||| ||| ||||||||||||||||||||||||||| ||||    
T  26686932 tctctcatattcacattatatttttactttctctctattgttttgatttt 26686981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 418 - 467
Target Start/End: Original strand, 26956663 - 26956712
Alignment:
Q  418 tctctcatactcatattgtatttttactttctctctattgttttgctttt 467  Q
    ||||||||| ||| ||| ||||||||||||||||||||||||||| ||||    
T  26956663 tctctcatattcacattatatttttactttctctctattgttttgatttt 26956712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 391 - 461
Target Start/End: Complemental strand, 41865671 - 41865597
Alignment:
Q  391 atatttatacaactactttgtgacaatt----ctctcatactcatattgtatttttactttctctctattgtttt 461  Q
    ||||||||||||||| ||||||||||||    || ||||||||| ||| |||||||||||| |||||||| ||||    
T  41865671 atatttatacaactattttgtgacaattttatctttcatactcacattatatttttactttatctctattatttt 41865597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 417 - 490
Target Start/End: Original strand, 40829464 - 40829539
Alignment:
Q  417 ttctctcatactcatattgtatttttactt--tctctctattgttttgcttttcgtgctaatacctacatttcttt 490  Q
    |||||||||||||| ||| |||||||||||  ||||||||||  |||  ||||||||||||||| ||| |||||||    
T  40829464 ttctctcatactcacattatatttttactttatctctctattactttaattttcgtgctaatacatacttttcttt 40829539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 461
Target Start/End: Original strand, 6420680 - 6420753
Alignment:
Q  391 atatttatacaactactttgtgacaa---ttctctcatactcatattgtatttttactttctctctattgtttt 461  Q
    |||||| |||||| | ||||||||||   |||||||||||||||||| |||| ||||| |||||| ||||||||    
T  6420680 atatttctacaaccattttgtgacaacttttctctcatactcatattatattcttactctctctccattgtttt 6420753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 493
Target Start/End: Complemental strand, 9168181 - 9168110
Alignment:
Q  422 tcatactcatattgtatttttactttctctctattgttttgcttttcgtgctaatacctacatttctttgta 493  Q
    ||||||||| ||| |||||||| ||||||||||||| |||| |||| |||| || || ||| ||||||||||    
T  9168181 tcatactcacattatatttttattttctctctattgctttggtttttgtgccaacacatacttttctttgta 9168110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 493
Target Start/End: Original strand, 14277683 - 14277758
Alignment:
Q  418 tctctcatactcatattgtatttttactttctctctattgttttgcttttcgtgctaatacctacatttctttgta 493  Q
    |||||||||||| |||| ||||||||| |||||||| ||| |||| ||| | ||||||||| ||  ||||||||||    
T  14277683 tctctcatactcgtattatatttttacattctctctgttgctttggtttacatgctaatacttatttttctttgta 14277758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 418 - 493
Target Start/End: Original strand, 884492 - 884569
Alignment:
Q  418 tctctcatactcatattgtatttttactttctc--tctattgttttgcttttcgtgctaatacctacatttctttgta 493  Q
    ||||||||||||| ||| |||||||||||||||  |||||||||||| |||| |||| || || ||| |||| |||||    
T  884492 tctctcatactcacattatatttttactttctctttctattgttttgatttttgtgccaacacatacttttcattgta 884569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 189 - 223
Target Start/End: Complemental strand, 14570075 - 14570041
Alignment:
Q  189 tttggagggtttatatgaaatcttcaaatttaatc 223  Q
    ||||||||||||||||||| |||||||||||||||    
T  14570075 tttggagggtttatatgaattcttcaaatttaatc 14570041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 418 - 493
Target Start/End: Original strand, 19952050 - 19952127
Alignment:
Q  418 tctctcatactcatattgtatttttactttc--tctctattgttttgcttttcgtgctaatacctacatttctttgta 493  Q
    ||||||||||||||||| | |||||||||||  |||||||||||||| ||| || |  ||||||||  ||||||||||    
T  19952050 tctctcatactcatattatgtttttactttctatctctattgttttgatttccgcgtcaatacctaattttctttgta 19952127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 467
Target Start/End: Original strand, 3564594 - 3564639
Alignment:
Q  422 tcatactcatattgtatttttactttctctctattgttttgctttt 467  Q
    ||||||||||||| | |||||||||||||||||||| |||| ||||    
T  3564594 tcatactcatattatgtttttactttctctctattgatttggtttt 3564639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 467
Target Start/End: Original strand, 11148562 - 11148611
Alignment:
Q  418 tctctcatactcatattgtatttttactttctctctattgttttgctttt 467  Q
    ||||||||||||| ||| | |||||||||||||||||||| |||| ||||    
T  11148562 tctctcatactcacattatgtttttactttctctctattgctttgatttt 11148611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 479
Target Start/End: Complemental strand, 15953066 - 15953003
Alignment:
Q  417 ttctctcatactcatattgtatttttacttt--ctctctattgttttgcttttcgtgctaatacc 479  Q
    |||||||||||||||||| | ||||||||||  |||||||||| |||| ||||||||| ||||||    
T  15953066 ttctctcatactcatattat-tttttactttatctctctattgctttgattttcgtgcaaatacc 15953003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 425 - 493
Target Start/End: Original strand, 6596390 - 6596458
Alignment:
Q  425 tactcatattgtatttttactttctctctattgttttgcttttcgtgctaatacctacatttctttgta 493  Q
    |||||| ||| | |||||||||||||||||||| |||| |||| ||| ||||||||   ||||||||||    
T  6596390 tactcacattatgtttttactttctctctattgctttggtttttgtgttaatacctcattttctttgta 6596458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 420 - 493
Target Start/End: Original strand, 30570578 - 30570651
Alignment:
Q  420 tctcatactcatattgtatttttactttctctctattgttttgcttttcgtgctaatacctacatttctttgta 493  Q
    ||||||||||| ||| | ||||||||||||||||||||||||| |||| ||||||||| ||  |||||||||||    
T  30570578 tctcatactcacattatgtttttactttctctctattgttttgatttttgtgctaatatctcgatttctttgta 30570651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 422 - 493
Target Start/End: Original strand, 34768185 - 34768256
Alignment:
Q  422 tcatactcatattgtatttttactttctctctattgttttgcttttcgtgctaatacctacatttctttgta 493  Q
    ||||| ||| ||| || ||||||||||||||||||| |||| ||||||||| ||||| ||||||||||||||    
T  34768185 tcataatcaaattataattttactttctctctattgctttggttttcgtgcaaatacatacatttctttgta 34768256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 423 - 498
Target Start/End: Original strand, 11597692 - 11597769
Alignment:
Q  423 catactcatattgtatttttactttctc--tctattgttttgcttttcgtgctaatacctacatttctttgtatatct 498  Q
    |||||||| ||| | |||||||||||||  |||||||||||| |||||||||||||| |||| |||||||||| ||||    
T  11597692 catactcacattatgtttttactttctctctctattgttttggttttcgtgctaatatctacttttctttgtaaatct 11597769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 418 - 493
Target Start/End: Original strand, 29877348 - 29877425
Alignment:
Q  418 tctctcatactcatattgtatttttactt--tctctctattgttttgcttttcgtgctaatacctacatttctttgta 493  Q
    ||||||||||||||||||||| |||||||  |||||||||||||||| ||||||||  ||||| ||  ||||||||||    
T  29877348 tctctcatactcatattgtatctttactttctctctctattgttttggttttcgtgtcaatacataattttctttgta 29877425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 412 - 493
Target Start/End: Original strand, 39466243 - 39466325
Alignment:
Q  412 gacaattctctcatactcatattgtatttttactttctctctattgttttgcttt-tcgtgctaatacctacatttctttgta 493  Q
    ||||| ||||||||||||  ||| |||||||||||||||| |||||||||| ||| ||||| ||||| |||||||| ||||||    
T  39466243 gacaactctctcatactctcattttatttttactttctctttattgttttgatttatcgtgttaatatctacatttttttgta 39466325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 417 - 541
Target Start/End: Original strand, 31433540 - 31433665
Alignment:
Q  417 ttctctcatactcatattgtatttttactt-tctctctattgttttgcttttcgtgctaatacctacatttctttgtatatctttagttgtattataagt 515  Q
    |||||||||||||| ||| | |||||| || |||||||||| ||||  ||||||||  |||||||||||| ||||||| |||| | ||||| | ||||||    
T  31433540 ttctctcatactcacattatgtttttatttatctctctattattttagttttcgtgtcaatacctacattactttgtaaatctatggttgtctcataagt 31433639  T
Q  516 tgtttaaaaaatagttgttcaaataa 541  Q
    | |   | ||||||||||||||||||    
T  31433640 tatcatacaaatagttgttcaaataa 31433665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 417 - 462
Target Start/End: Complemental strand, 50884776 - 50884731
Alignment:
Q  417 ttctctcatactcatattgtatttttactttctctctattgttttg 462  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||    
T  50884776 ttctctcatactcatattatatttttattttctctctattgttttg 50884731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 417 - 477
Target Start/End: Complemental strand, 49020425 - 49020365
Alignment:
Q  417 ttctctcatactcatattgtatttttactttctctctattgttttgcttttcgtgctaata 477  Q
    |||||||||||||| ||| ||||||| ||||||||||||||||||| |||| |||| ||||    
T  49020425 ttctctcatactcacattatattttttctttctctctattgttttggtttttgtgccaata 49020365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 391 - 436
Target Start/End: Complemental strand, 25962884 - 25962839
Alignment:
Q  391 atatttatacaactactttgtgacaattctctcatactcatattgt 436  Q
    ||||||| ||||||| ||| ||||||||||||||||||||||||||    
T  25962884 atatttaaacaactattttatgacaattctctcatactcatattgt 25962839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 445 - 550
Target Start/End: Original strand, 37454034 - 37454139
Alignment:
Q  445 tttctctctattgttttgcttttcgtgctaatacctacatttctttgtatatctttagttgtattataagttgtttaaaaaatagttgttcaaataatat 544  Q
    ||||| ||||||| |||| ||||||||  || || ||||||| ||| ||||| |||||||||   |||||||||  ||||| ||||||||||||||| ||    
T  37454034 tttctttctattgctttgattttcgtgtcaaaacatacatttttttctatatttttagttgtcccataagttgtacaaaaagtagttgttcaaataacat 37454133  T
Q  545 atctcc 550  Q
    | ||||    
T  37454134 acctcc 37454139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 379 - 456
Target Start/End: Original strand, 1690442 - 1690523
Alignment:
Q  379 taaagagaaacaatatttatacaactactttgtgacaa----ttctctcatactcatattgtatttttactttctctctatt 456  Q
    |||||||||| ||||||| |||||| | ||||||||||    |||||||||||||||| | | |||||| ||||||||||||    
T  1690442 taaagagaaataatatttgtacaaccattttgtgacaactttttctctcatactcataatatgtttttaatttctctctatt 1690523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 445 - 541
Target Start/End: Original strand, 35848490 - 35848586
Alignment:
Q  445 tttctctctattgttttgcttttcgtgctaatacctacatttctttgtatatctttagttgtattataagttgtttaaaaaatagttgttcaaataa 541  Q
    |||||||||||||||||| ||||||||  || || ||||||||||| |||||  || |||||   |||||||||  ||||| | |||||||||||||    
T  35848490 tttctctctattgttttgattttcgtgtcaagacatacatttctttctatattcttggttgtcccataagttgtacaaaaagtggttgttcaaataa 35848586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 447 - 541
Target Start/End: Original strand, 19442593 - 19442687
Alignment:
Q  447 tctctctattgttttgcttttcgtgctaatacctacatttctttgtatatctttagttgtattataagttgtt-taaaaaatagttgttcaaataa 541  Q
    ||||||||||| |||| |||| |||| || ||||| || ||||||||||| |||||||||   ||||||||||  | |||||||||||||||||||    
T  19442593 tctctctattgctttggtttttgtgccaagacctatatatctttgtatat-tttagttgtccaataagttgttacataaaatagttgttcaaataa 19442687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 496
Target Start/End: Original strand, 41062766 - 41062844
Alignment:
Q  420 tctcatactcatattgtatttttactttctctct--attgttttgcttttcgtgctaatacctacatttctttgtatat 496  Q
    ||||||| ||||||| |||||||||||||||| |  ||||||||| ||||  |  |||||||||||||||||| |||||    
T  41062766 tctcatattcatattatatttttactttctcttttcattgttttgatttttatattaatacctacatttctttatatat 41062844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 418 - 472
Target Start/End: Original strand, 29359689 - 29359743
Alignment:
Q  418 tctctcatactcatattgtatttttactttctctctattgttttgcttttcgtgc 472  Q
    ||||||||||||| ||| | |||||||||||||||||||| |||| |||| ||||    
T  29359689 tctctcatactcacattatctttttactttctctctattgctttggtttttgtgc 29359743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 418 - 456
Target Start/End: Original strand, 30536042 - 30536080
Alignment:
Q  418 tctctcatactcatattgtatttttactttctctctatt 456  Q
    ||||||||||||| ||| |||||||||||||||||||||    
T  30536042 tctctcatactcacattatatttttactttctctctatt 30536080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 418 - 493
Target Start/End: Complemental strand, 34818065 - 34817988
Alignment:
Q  418 tctctcatactcatattgtatttttactttctc--tctattgttttgcttttcgtgctaatacctacatttctttgta 493  Q
    ||||||||||||||||| |||||||||||||||  ||||||| |||| |||| |||| || || ||  ||||||||||    
T  34818065 tctctcatactcatattatatttttactttctctttctattgctttgatttttgtgccaacacatatttttctttgta 34817988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 418 - 456
Target Start/End: Original strand, 46758420 - 46758458
Alignment:
Q  418 tctctcatactcatattgtatttttactttctctctatt 456  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  46758420 tctctcatactcatattatttttttactttctctctatt 46758458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 506
Target Start/End: Complemental strand, 18639727 - 18639638
Alignment:
Q  417 ttctctcatactcatattgtatttttactttctctctattgttttgcttttcgtgctaatacctacatttctttgtatatctttagttgt 506  Q
    ||||||| |||||| ||| ||||||||  || |||||||||||||  ||||||||  ||||||||| | |||||||| || ||| |||||    
T  18639727 ttctctcttactcacattatatttttatcttatctctattgttttagttttcgtgtcaatacctacttatctttgtaaatattttgttgt 18639638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 459
Target Start/End: Original strand, 18982570 - 18982611
Alignment:
Q  418 tctctcatactcatattgtatttttactttctctctattgtt 459  Q
    |||||||||||| ||||||||||||| | |||||||||||||    
T  18982570 tctctcatactcttattgtatttttattctctctctattgtt 18982611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 467
Target Start/End: Original strand, 37685381 - 37685430
Alignment:
Q  418 tctctcatactcatattgtatttttactttctctctattgttttgctttt 467  Q
    ||||||||||||| ||| | |||||||||||||||||||| |||| ||||    
T  37685381 tctctcatactcacattatctttttactttctctctattgctttgatttt 37685430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 467
Target Start/End: Complemental strand, 37700137 - 37700088
Alignment:
Q  418 tctctcatactcatattgtatttttactttctctctattgttttgctttt 467  Q
    ||||||||||||| ||| | |||||||||||||||||||| |||| ||||    
T  37700137 tctctcatactcacattatctttttactttctctctattgctttgatttt 37700088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 418 - 495
Target Start/End: Complemental strand, 7919082 - 7919003
Alignment:
Q  418 tctctcatactcatattgtatttttacttt--ctctctattgttttgcttttcgtgctaatacctacatttctttgtata 495  Q
    |||||||||||||||||||  || ||||||  |||||||||  |||| |||| |||| | |||||| |||||||||||||    
T  7919082 tctctcatactcatattgtccttctactttatctctctattactttgatttttgtgccactacctaaatttctttgtata 7919003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 418 - 462
Target Start/End: Original strand, 15059690 - 15059734
Alignment:
Q  418 tctctcatactcatattgtatttttactttctctctattgttttg 462  Q
    ||||||||||||| ||| |||||||| | ||||||||||||||||    
T  15059690 tctctcatactcacattatatttttattctctctctattgttttg 15059734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 474 - 506
Target Start/End: Original strand, 17135405 - 17135437
Alignment:
Q  474 aatacctacatttctttgtatatctttagttgt 506  Q
    ||||| |||||||||||||||||||||||||||    
T  17135405 aatacttacatttctttgtatatctttagttgt 17135437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 412 - 491
Target Start/End: Original strand, 39443870 - 39443950
Alignment:
Q  412 gacaattctctcatactcatattgtatttttactttctctctattgttttgcttt-tcgtgctaatacctacatttctttg 491  Q
    ||||| |||||||||||   ||| | |||||||||||||| |||||||||| ||| ||||| ||||| |||||||| ||||    
T  39443870 gacaactctctcatactgtcattttgtttttactttctctttattgttttgatttatcgtgttaatatctacatttttttg 39443950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 418 - 518
Target Start/End: Complemental strand, 51436792 - 51436689
Alignment:
Q  418 tctctcatactcatattgtatttttactt--tctctctattgttttgcttttcgtgctaatacctac-atttctttgtatatctttagttgtattataag 514  Q
    ||||||||||||| ||| | |||||||||  ||||| |||||||||| ||||| ||  |||||||||  |||||||||| |||| | |||||  ||||||    
T  51436792 tctctcatactcacattttgtttttactttatctctttattgttttggttttcatgtcaatacctactttttctttgtaaatctatggttgtcatataag 51436693  T
Q  515 ttgt 518  Q
    ||||    
T  51436692 ttgt 51436689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 424 - 493
Target Start/End: Complemental strand, 16328714 - 16328643
Alignment:
Q  424 atactcatattgtatttttactttctctc--tattgttttgcttttcgtgctaatacctacatttctttgta 493  Q
    ||||||| ||| |||||||||||||||||  |||||||||| ||||||||| ||||| ||||||||||||||    
T  16328714 atactcacattatatttttactttctctcactattgttttggttttcgtgccaatacatacatttctttgta 16328643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 418 - 493
Target Start/End: Complemental strand, 16337943 - 16337866
Alignment:
Q  418 tctctcatactcatattgtatttttactttctct--ctattgttttgcttttcgtgctaatacctacatttctttgta 493  Q
    ||||||||||||| ||| ||||||||||||||||  ||||||| ||| ||||||||  ||||| ||||||||||||||    
T  16337943 tctctcatactcacattatatttttactttctctcactattgtcttggttttcgtgtcaatacatacatttctttgta 16337866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 418 - 493
Target Start/End: Complemental strand, 16352181 - 16352104
Alignment:
Q  418 tctctcatactcatattgtatttttactttctctc--tattgttttgcttttcgtgctaatacctacatttctttgta 493  Q
    ||||||||| ||| ||| |||||||||||||||||  |||||||||| ||||| ||| ||||| ||||||||||||||    
T  16352181 tctctcataatcacattatatttttactttctctcactattgttttggttttcatgccaatacatacatttctttgta 16352104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 391 - 543
Target Start/End: Original strand, 31413544 - 31413702
Alignment:
Q  391 atatttatacaactactttgtgacaattctctc----atactcatattgtatttttacttt--ctctctattgttttgcttttcgtgctaatacctacat 484  Q
    |||||| ||||| || |||||||||||| ||||    ||||| ||||| ||||||||||||  |||||||||| |||| |||||||  ||||||||||      
T  31413544 atatttgtacaattattttgtgacaattttctctctaatacttatattttatttttactttatctctctattgctttgattttcgtattaatacctacta 31413643  T
Q  485 ttctttgtatatctttagttgtattataagttgtttaaaaaatagttgttcaaataata 543  Q
    ||||||||| |||| | | | || ||||||||||  || |||| |||||| ||||||||    
T  31413644 ttctttgtaaatctatggatatactataagttgtcaaataaatggttgtttaaataata 31413702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 417 - 477
Target Start/End: Complemental strand, 2060655 - 2060595
Alignment:
Q  417 ttctctcatactcatattgtatttttactttctctctattgttttgcttttcgtgctaata 477  Q
    |||||||||||||| ||| ||||||||| |||||||||||| |||| |||| |||||||||    
T  2060655 ttctctcatactcacattatatttttaccttctctctattgctttggtttttgtgctaata 2060595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 418 - 482
Target Start/End: Complemental strand, 5522658 - 5522594
Alignment:
Q  418 tctctcatactcatattgtatttttactttctctctattgttttgcttttcgtgctaatacctac 482  Q
    ||||||||| ||| ||| || ||||||||||||||||||| |||| |||| ||||||||||||||    
T  5522658 tctctcatattcacattatacttttactttctctctattgctttggtttttgtgctaatacctac 5522594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 447 - 546
Target Start/End: Original strand, 34851568 - 34851667
Alignment:
Q  447 tctctctattgttttgcttttcgtgctaatacctacatttctttgtatatctttagttgtattataagttgtttaaaaaatagttgttcaaataatatat 546  Q
    ||||| |||| ||||  |||| ||| |||||  |||||||||||||| |||||| ||||| | ||||||||||| |||||| ||| ||||||||| ||||    
T  34851568 tctctttattattttagtttttgtgttaatatatacatttctttgtaaatctttggttgtctcataagttgttttaaaaatggttcttcaaataacatat 34851667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 453 - 518
Target Start/End: Original strand, 30565933 - 30565997
Alignment:
Q  453 tattgttttgcttttcgtgctaatacctacatttctttgtatatctttagttgtattataagttgt 518  Q
    |||||||||| ||||||||| ||||||||||||||||| ||| | ||||||||||  |||||||||    
T  30565933 tattgttttggttttcgtgccaatacctacatttctttttat-tatttagttgtaccataagttgt 30565997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 449 - 513
Target Start/End: Original strand, 10375738 - 10375802
Alignment:
Q  449 tctctattgttttgcttttcgtgctaatacctacatttctttgtatatctttagttgtattataa 513  Q
    |||||||||||||| |||| |||  |||||||| ||||||||||||||||||  |||| ||||||    
T  10375738 tctctattgttttgatttttgtgtcaatacctatatttctttgtatatctttgattgtcttataa 10375802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 189 - 223
Target Start/End: Original strand, 15615723 - 15615757
Alignment:
Q  189 tttggagggtttatatgaaatcttcaaatttaatc 223  Q
    ||||||||||||||||||| |||||||||||||||    
T  15615723 tttggagggtttatatgaattcttcaaatttaatc 15615757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 493
Target Start/End: Original strand, 16336885 - 16336954
Alignment:
Q  424 atactcatattgtatttttactttctctctattgttttgcttttcgtgctaatacctacatttctttgta 493  Q
    |||||||||||  |||||||| |||||||||||  |||||||||||||  || || ||| ||||||||||    
T  16336885 atactcatattacatttttacattctctctattactttgcttttcgtgtcaacacatacttttctttgta 16336954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 490
Target Start/End: Complemental strand, 16368065 - 16367993
Alignment:
Q  420 tctcatactcatattgtatttttactttctct--ctattgttttgcttttcgtgctaatacctacatttcttt 490  Q
    ||||||||||| ||| ||||||||||||||||  ||||||| ||| |||| |||  ||||| |||||||||||    
T  16368065 tctcatactcacattatatttttactttctctcactattgtcttggtttttgtgtcaatacatacatttcttt 16367993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 189 - 221
Target Start/End: Original strand, 32222058 - 32222090
Alignment:
Q  189 tttggagggtttatatgaaatcttcaaatttaa 221  Q
    ||||||||||||||||||| |||||||||||||    
T  32222058 tttggagggtttatatgaattcttcaaatttaa 32222090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 417 - 549
Target Start/End: Complemental strand, 36820136 - 36820004
Alignment:
Q  417 ttctctcatactcatattgtatttttactttctctctattgttttgcttttcgtgctaatacctacatttctttgtatatctttagttgtattataagtt 516  Q
    |||| |||||||  |||||| |||||| ||||||||| |||||||  |||  |||  ||||||||| ||  ||||||||||||||||| |    ||||||    
T  36820136 ttctatcatacttttattgtgtttttattttctctctgttgttttaatttgtgtgtcaatacctacgttattttgtatatctttagttatcacgtaagtt 36820037  T
Q  517 gtttaaaaaatagttgttcaaataatatatctc 549  Q
     | ||||||||||||||| |||||| |||||||    
T  36820036 atctaaaaaatagttgtttaaataagatatctc 36820004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 447 - 541
Target Start/End: Original strand, 1248333 - 1248427
Alignment:
Q  447 tctctctattgttttgcttttcgtgctaatacctacatttctttgtatatctttagttgtattataagttgtttaaaaaatagttgttcaaataa 541  Q
    ||||||||||| |||| ||||||| |||| || ||||||||||| |||||  ||  |||| | |||| ||||  |||||||||||||||||||||    
T  1248333 tctctctattgctttgattttcgtactaagacatacatttctttctatattcttgtttgtctcataaattgtacaaaaaatagttgttcaaataa 1248427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 418 - 496
Target Start/End: Complemental strand, 12284290 - 12284210
Alignment:
Q  418 tctctcatactcatattgtatttttactttctctc--tattgttttgcttttcgtgctaatacctacatttctttgtatat 496  Q
    ||||||||||||||||| | |||||||||||||||  |||||||||| |||| |||  |||||  | ||||||||||||||    
T  12284290 tctctcatactcatattttgtttttactttctctctttattgttttggtttttgtgacaatactcatatttctttgtatat 12284210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 420 - 477
Target Start/End: Complemental strand, 27854785 - 27854728
Alignment:
Q  420 tctcatactcatattgtatttttactttctctctattgttttgcttttcgtgctaata 477  Q
    ||||||||||| ||| | ||||||||||||||||||||||||| |||| |||| ||||    
T  27854785 tctcatactcacattatgtttttactttctctctattgttttgatttttgtgccaata 27854728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 446 - 550
Target Start/End: Complemental strand, 999250 - 999146
Alignment:
Q  446 ttctctctattgttttgcttttcgtgctaatacctacatttctttgtatatctttagttgtattataagttgtttaaaaaatagttgttcaaataatata 545  Q
    |||||||| ||| |||| ||||||||  || || ||||||||||| |||||  || ||||| | ||||||||| |||||| | ||||||||||||| |||    
T  999250 ttctctctcttgctttgattttcgtgtcaagacatacatttctttctatattcttggttgtctaataagttgtataaaaagtggttgttcaaataacata 999151  T
Q  546 tctcc 550  Q
     ||||    
T  999150 cctcc 999146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 418 - 493
Target Start/End: Original strand, 35067211 - 35067288
Alignment:
Q  418 tctctcatactcatattgtatttttactt--tctctctattgttttgcttttcgtgctaatacctacatttctttgta 493  Q
    ||||||||||||| ||| |||||||||||  ||||||||||| |||| |||| |||| || || ||| ||||||||||    
T  35067211 tctctcatactcacattatatttttactttctctctctattgctttggtttttgtgccaacacatacttttctttgta 35067288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 420 - 543
Target Start/End: Original strand, 40517310 - 40517435
Alignment:
Q  420 tctcatactcatattgtatttttactttctct--ctattgttttgcttttcgtgctaatacctacatttctttgtatatctttagttgtattataagttg 517  Q
    ||||||||||||||| | |||||| ||| |||  |||||| |||| ||||||||  |||| |||| |||||||||| || | | ||||| ||||||| ||    
T  40517310 tctcatactcatattatgtttttattttatctttctattgctttgattttcgtgtcaatatctacttttctttgtaaatttatggttgtcttataagatg 40517409  T
Q  518 tttaaaaaatagttgttcaaataata 543  Q
    |   ||||||  ||||||||||||||    
T  40517410 tcataaaaatgattgttcaaataata 40517435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 417 - 467
Target Start/End: Original strand, 42768255 - 42768305
Alignment:
Q  417 ttctctcatactcatattgtatttttactttctctctattgttttgctttt 467  Q
    |||||||||||||| ||| | |||||||||||||||||||| |||| ||||    
T  42768255 ttctctcatactcacattatttttttactttctctctattgctttggtttt 42768305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 467
Target Start/End: Complemental strand, 5842865 - 5842820
Alignment:
Q  422 tcatactcatattgtatttttactttctctctattgttttgctttt 467  Q
    ||||||||||||| |||||||| |||||||||| ||||||| ||||    
T  5842865 tcatactcatattatatttttattttctctctagtgttttggtttt 5842820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 222
Target Start/End: Complemental strand, 12506221 - 12506188
Alignment:
Q  189 tttggagggtttatatgaaatcttcaaatttaat 222  Q
    ||||||||||||||||||| ||||||||||||||    
T  12506221 tttggagggtttatatgaattcttcaaatttaat 12506188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 223
Target Start/End: Original strand, 12595370 - 12595403
Alignment:
Q  190 ttggagggtttatatgaaatcttcaaatttaatc 223  Q
    |||||||||||||||||| |||||||||||||||    
T  12595370 ttggagggtttatatgaattcttcaaatttaatc 12595403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 222
Target Start/End: Complemental strand, 31305810 - 31305777
Alignment:
Q  189 tttggagggtttatatgaaatcttcaaatttaat 222  Q
    ||||||||||||||||||| ||||||||||||||    
T  31305810 tttggagggtttatatgaattcttcaaatttaat 31305777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 496
Target Start/End: Original strand, 39211092 - 39211172
Alignment:
Q  418 tctctcatactcatattgtatttttacttt--ctctctattgttttgcttttcgtgctaatacctacatttctttgtatat 496  Q
    ||||||||||||| ||| | ||||||||||  ||||||||||||||| |||| |||  |||||  | ||||||||||||||    
T  39211092 tctctcatactcacattttgtttttactttttctctctattgttttggtttttgtgtcaatactcatatttctttgtatat 39211172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 381 - 467
Target Start/End: Complemental strand, 5740847 - 5740755
Alignment:
Q  381 aagagaaacaatatttatacaactactttgtgacaa----ttctctcatactcatattgtatttttactttct--ctctattgttttgctttt 467  Q
    ||||||||  |||||| |||||| ||||| ||||||    |||||||||||||| ||| | ||||||||||||  ||||||||||||| ||||    
T  5740847 aagagaaatgatatttgtacaaccactttttgacaactttttctctcatactcacattatgtttttactttctctctctattgttttggtttt 5740755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 407 - 455
Target Start/End: Complemental strand, 7331381 - 7331333
Alignment:
Q  407 tttgtgacaattctctcatactcatattgtatttttactttctctctat 455  Q
    |||||||||||| ||||||||||||||| | |||||| ||| |||||||    
T  7331381 tttgtgacaattttctcatactcatattatgtttttattttatctctat 7331333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 189 - 221
Target Start/End: Original strand, 8228599 - 8228631
Alignment:
Q  189 tttggagggtttatatgaaatcttcaaatttaa 221  Q
    ||||||||||||||||||| |||||||||||||    
T  8228599 tttggagggtttatatgaattcttcaaatttaa 8228631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 417 - 453
Target Start/End: Original strand, 12655972 - 12656008
Alignment:
Q  417 ttctctcatactcatattgtatttttactttctctct 453  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  12655972 ttctctcatattcatattatatttttactttctctct 12656008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 418 - 467
Target Start/End: Complemental strand, 24798378 - 24798327
Alignment:
Q  418 tctctcatactcatattgtatttttactttctc--tctattgttttgctttt 467  Q
    ||||||||||||| ||| |||||||||||||||  |||||||||||| ||||    
T  24798378 tctctcatactcacattatatttttactttctctttctattgttttgatttt 24798327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 439 - 495
Target Start/End: Complemental strand, 28772123 - 28772067
Alignment:
Q  439 ttttactttctctctattgttttgcttttcgtgctaatacctacatttctttgtata 495  Q
    ||||||| ||||| |||||||||| |||| |||| | |||||| |||||||||||||    
T  28772123 ttttactctctctttattgttttgatttttgtgccactacctaaatttctttgtata 28772067  T

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Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 418 - 462
Target Start/End: Complemental strand, 33605098 - 33605054
Alignment:
Q  418 tctctcatactcatattgtatttttactttctctctattgttttg 462  Q
    ||||||||||||| ||||| |||||||| ||||||||||| ||||    
T  33605098 tctctcatactcacattgtgtttttactctctctctattgctttg 33605054  T

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Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 417 - 453
Target Start/End: Complemental strand, 41639821 - 41639785
Alignment:
Q  417 ttctctcatactcatattgtatttttactttctctct 453  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  41639821 ttctctcatactcacattatatttttactttctctct 41639785  T

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Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 474 - 506
Target Start/End: Original strand, 42032511 - 42032543
Alignment:
Q  474 aatacctacatttctttgtatatctttagttgt 506  Q
    |||| ||||||||||||||||||||||||||||    
T  42032511 aatatctacatttctttgtatatctttagttgt 42032543  T

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Target: scaffold1086 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold1086
Description:

Target: scaffold1086; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 453 - 518
Target Start/End: Original strand, 2363 - 2427
Alignment:
Q  453 tattgttttgcttttcgtgctaatacctacatttctttgtatatctttagttgtattataagttgt 518  Q
    |||||||||| ||||||||| ||||||||||||||||| ||| | ||||||||||  |||||||||    
T  2363 tattgttttggttttcgtgccaatacctacatttctttttat-tatttagttgtaccataagttgt 2427  T

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Target: scaffold0007 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 420 - 493
Target Start/End: Original strand, 246713 - 246786
Alignment:
Q  420 tctcatactcatattgtatttttactttctctctattgttttgcttttcgtgctaatacctacatttctttgta 493  Q
    ||||||||| ||||| |||||||||||||||||||||  |||| ||||||||| ||  | ||| ||||||||||    
T  246713 tctcatacttatattatatttttactttctctctattactttggttttcgtgccaaatcatacttttctttgta 246786  T

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Target: scaffold0128 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 495
Target Start/End: Original strand, 10987 - 11064
Alignment:
Q  418 tctctcatactcatattgtatttttactttctctctattgttttgcttttcgtgctaatacctacatttctttgtata 495  Q
    ||||||||||||| ||| |  ||||||| ||||||||||| |||| |||| |||| | || ||| |||||||||||||    
T  10987 tctctcatactcacattatcattttactctctctctattgctttgatttttgtgccactaactaaatttctttgtata 11064  T

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Target: scaffold0119 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 222
Target Start/End: Original strand, 37177 - 37210
Alignment:
Q  189 tttggagggtttatatgaaatcttcaaatttaat 222  Q
    ||||||||||||||||||| ||||||||||||||    
T  37177 tttggagggtttatatgaattcttcaaatttaat 37210  T

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Target: scaffold0119; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 189 - 221
Target Start/End: Original strand, 30510 - 30542
Alignment:
Q  189 tttggagggtttatatgaaatcttcaaatttaa 221  Q
    ||||||||||||||||||| |||||||||||||    
T  30510 tttggagggtttatatgaattcttcaaatttaa 30542  T

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Target: scaffold0532 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 418 - 479
Target Start/End: Original strand, 11015 - 11077
Alignment:
Q  418 tctctcatactcatattgtatttttacttt--ctctctattgttttgcttttcgtgctaatacc 479  Q
    ||||||||||||| ||| | ||||||||||  ||||||||||||||| ||||||||| ||||||    
T  11015 tctctcatactcacattat-tttttactttatctctctattgttttgattttcgtgcaaatacc 11077  T

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