View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15596_high_5 (Length: 321)

Name: NF15596_high_5
Description: NF15596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15596_high_5
NF15596_high_5
[»] chr6 (24 HSPs)
chr6 (174-305)||(33643636-33643767)
chr6 (12-84)||(33643474-33643546)
chr6 (174-276)||(33058520-33058622)
chr6 (174-288)||(33388983-33389097)
chr6 (12-77)||(9167917-9167982)
chr6 (12-77)||(33411098-33411163)
chr6 (12-77)||(31561678-31561743)
chr6 (12-77)||(33305632-33305697)
chr6 (12-77)||(33389215-33389280)
chr6 (11-77)||(33272938-33273004)
chr6 (174-282)||(33286493-33286598)
chr6 (239-304)||(9167686-9167751)
chr6 (12-77)||(33286688-33286753)
chr6 (174-301)||(33272728-33272849)
chr6 (12-77)||(33058709-33058774)
chr6 (177-282)||(33263585-33263681)
chr6 (12-77)||(33263795-33263860)
chr6 (247-282)||(31561898-31561933)
chr6 (239-282)||(33410917-33410960)
chr6 (240-282)||(33359657-33359699)
chr6 (174-211)||(9167791-9167828)
chr6 (174-211)||(33359722-33359759)
chr6 (174-211)||(33401633-33401670)
chr6 (12-76)||(33401761-33401825)
[»] scaffold0428 (2 HSPs)
scaffold0428 (12-76)||(7907-7971)
scaffold0428 (239-282)||(7346-7389)
[»] chr2 (1 HSPs)
chr2 (174-282)||(17439857-17439959)
[»] chr4 (4 HSPs)
chr4 (9-77)||(31497786-31497854)
chr4 (174-211)||(31477989-31478026)
chr4 (174-211)||(31483839-31483876)
chr4 (174-211)||(31527443-31527480)
[»] scaffold1408 (1 HSPs)
scaffold1408 (239-282)||(1600-1643)


Alignment Details
Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 174 - 305
Target Start/End: Original strand, 33643636 - 33643767
Alignment:
Q  174 caatgctttaggaaaagcatgttgaagccatagttttggaatatgaagattatgatgaagaggaagttgaatacttgtcaaaaatgagtaatcttagatt 273  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33643636 caatgctttaggaaaagcatgttgaagccatagttttggaatatgaagattatgatgaagaggaagttgaatacttgtcaaaaatgagtaatcttagatt 33643735  T
Q  274 gctgatcataaagtgcggttggcatatcttag 305  Q
    ||||||||||||||||||||||||||||||||    
T  33643736 gctgatcataaagtgcggttggcatatcttag 33643767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 33643474 - 33643546
Alignment:
Q  12 aagaaagtggagcaggctgtggtccaaaaaacaaatctacaatgttgtgatggagaatatggtaaatcagctg 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33643474 aagaaagtggagcaggctgtggtccaaaaaacaaatctacaatgttgtgatggagaatatggtaaatcagctg 33643546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 174 - 276
Target Start/End: Complemental strand, 33058622 - 33058520
Alignment:
Q  174 caatgctttaggaaaagcatgttgaagccatagttttggaatatgaagattatgatgaagaggaagttgaatacttgtcaaaaatgagtaatcttagatt 273  Q
    |||||||||||||||||||||||||||||||||||||| | ||  ||||  |||| || | |||  ||||| |||||||||||||||||||||| |||||    
T  33058622 caatgctttaggaaaagcatgttgaagccatagttttgtattacaaagaagatgaagaggcggactttgaacacttgtcaaaaatgagtaatctcagatt 33058523  T
Q  274 gct 276  Q
    |||    
T  33058522 gct 33058520  T

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Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 174 - 288
Target Start/End: Complemental strand, 33389097 - 33388983
Alignment:
Q  174 caatgctttaggaaaagcatgttgaagccatagttttggaatatgaagattatgatgaagaggaagttgaatacttgtcaaaaatgagtaatcttagatt 273  Q
    ||||||||||||||| |||||||||||||||||||||| |  |||| |||  ||| || | ||| |||||| | ||||||||||||||||||||||||||    
T  33389097 caatgctttaggaaaggcatgttgaagccatagttttgaatgatgatgatgttgaagaggtggacgttgaacagttgtcaaaaatgagtaatcttagatt 33388998  T
Q  274 gctgatcataaagtg 288  Q
     || ||||| |||||    
T  33388997 actcatcatcaagtg 33388983  T

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Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 9167982 - 9167917
Alignment:
Q  12 aagaaagtggagcaggctgtggtccaaaaaacaaatctacaatgttgtgatggagaatatggtaaa 77  Q
    |||||| ||||||||| ||||||||||||||||| |||||||||||| |||||||| |||||||||    
T  9167982 aagaaaatggagcaggttgtggtccaaaaaacaactctacaatgttgcgatggagagtatggtaaa 9167917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 33411163 - 33411098
Alignment:
Q  12 aagaaagtggagcaggctgtggtccaaaaaacaaatctacaatgttgtgatggagaatatggtaaa 77  Q
    |||||||||||||||| | ||||||||||||||| ||||||| ||| |||||||||||||||||||    
T  33411163 aagaaagtggagcaggatctggtccaaaaaacaactctacaacgttatgatggagaatatggtaaa 33411098  T

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Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 31561678 - 31561743
Alignment:
Q  12 aagaaagtggagcaggctgtggtccaaaaaacaaatctacaatgttgtgatggagaatatggtaaa 77  Q
    |||||||||||||||| |||||||| |  ||||||||||||||||| |||||||||| ||||||||    
T  31561678 aagaaagtggagcaggttgtggtcccatgaacaaatctacaatgttatgatggagaaaatggtaaa 31561743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 33305697 - 33305632
Alignment:
Q  12 aagaaagtggagcaggctgtggtccaaaaaacaaatctacaatgttgtgatggagaatatggtaaa 77  Q
    |||||||||||||||| | ||||||||||| ||| ||||||||||| || ||||||||||||||||    
T  33305697 aagaaagtggagcagggtctggtccaaaaagcaactctacaatgttatggtggagaatatggtaaa 33305632  T

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Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 33389280 - 33389215
Alignment:
Q  12 aagaaagtggagcaggctgtggtccaaaaaacaaatctacaatgttgtgatggagaatatggtaaa 77  Q
    |||||||||||||||| |||||||| |||||||| |||||||||||  ||||||||| ||||||||    
T  33389280 aagaaagtggagcagggtgtggtcccaaaaacaactctacaatgttacgatggagaaaatggtaaa 33389215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 33273004 - 33272938
Alignment:
Q  11 gaagaaagtggagcaggctgtggtccaaaaaacaaatctacaatgttgtgatggagaatatggtaaa 77  Q
    ||||||||||||||||| |||||||| |||||||| || ||||||||  ||||||||| ||||||||    
T  33273004 gaagaaagtggagcagggtgtggtccgaaaaacaactcaacaatgttacgatggagaaaatggtaaa 33272938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 174 - 282
Target Start/End: Complemental strand, 33286598 - 33286493
Alignment:
Q  174 caatgctttaggaaaagcatgttgaagccatagttttggaatatgaagattatgatgaagaggaagttgaatacttgtcaaaaatgagtaatcttagatt 273  Q
    ||||||||||||||||||||||| ||||| |||||||| |  |||||||    | || |  | | |||||| ||||||||||||||||||||||||||||    
T  33286598 caatgctttaggaaaagcatgttaaagccttagttttgaatgatgaagag---gttggattgaatgttgaacacttgtcaaaaatgagtaatcttagatt 33286502  T
Q  274 gctgatcat 282  Q
    ||| |||||    
T  33286501 gctcatcat 33286493  T

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Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 304
Target Start/End: Complemental strand, 9167751 - 9167686
Alignment:
Q  239 gttgaatacttgtcaaaaatgagtaatcttagattgctgatcataaagtgcggttggcatatctta 304  Q
    |||||| |||||||||||||||||| |||||||||||| ||||| || | ||||||| ||||||||    
T  9167751 gttgaacacttgtcaaaaatgagtagtcttagattgctcatcatcaaatacggttggaatatctta 9167686  T

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Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 33286753 - 33286688
Alignment:
Q  12 aagaaagtggagcaggctgtggtccaaaaaacaaatctacaatgttgtgatggagaatatggtaaa 77  Q
    |||||| ||||||||| ||||||||| | ||||| ||||||||||| || ||||||||||||||||    
T  33286753 aagaaaatggagcaggttgtggtccacagaacaactctacaatgttatgttggagaatatggtaaa 33286688  T

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Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 301
Target Start/End: Complemental strand, 33272849 - 33272728
Alignment:
Q  174 caatgctttaggaaaagcatgttgaagccatagttttggaatatgaagattatgatgaagaggaagttgaatacttgtcaaaaatgagtaatcttagatt 273  Q
    ||||||| |||||||||||||||||||||||||      | | || || |||||| |||| ||  |||||| ||||| ||||||||||||||||||||||    
T  33272849 caatgctataggaaaagcatgttgaagccataga-----actttggag-ttatgaagaagtggtcgttgaacacttggcaaaaatgagtaatcttagatt 33272756  T
Q  274 gctgatcataaagtgcggttggcatatc 301  Q
    ||| || || ||||||||| || |||||    
T  33272755 gctcataatcaagtgcggtcggaatatc 33272728  T

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Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 33058774 - 33058709
Alignment:
Q  12 aagaaagtggagcaggctgtggtccaaaaaacaaatctacaatgttgtgatggagaatatggtaaa 77  Q
    |||||| ||||||||| ||||||||| | ||||| ||||| ||||| || ||||||||||||||||    
T  33058774 aagaaaatggagcaggttgtggtccacagaacaactctacgatgttatgttggagaatatggtaaa 33058709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 282
Target Start/End: Complemental strand, 33263681 - 33263585
Alignment:
Q  177 tgctttaggaaaagcatgttgaagccatagttttggaatatgaagattatgatgaagaggaagttgaatacttgtcaaaaatgagtaatcttagattgct 276  Q
    |||||||||||||||| ||| ||||||||||||||||  |||||||          | ||| |||||| | |||||||||||||||||||||||||||||    
T  33263681 tgctttaggaaaagcaagttaaagccatagttttggatgatgaagag---------gtggacgttgaacaattgtcaaaaatgagtaatcttagattgct 33263591  T

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Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 33263860 - 33263795
Alignment:
Q  12 aagaaagtggagcaggctgtggtccaaaaaacaaatctacaatgttgtgatggagaatatggtaaa 77  Q
    |||||| ||||| ||| ||||||||  ||||||| |||||||||||  ||||||||||||||||||    
T  33263860 aagaaaatggagtaggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaaa 33263795  T

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Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 247 - 282
Target Start/End: Original strand, 31561898 - 31561933
Alignment:
Q  247 cttgtcaaaaatgagtaatcttagattgctgatcat 282  Q
    |||||||||||||||||||||||||||||| |||||    
T  31561898 cttgtcaaaaatgagtaatcttagattgctcatcat 31561933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 282
Target Start/End: Complemental strand, 33410960 - 33410917
Alignment:
Q  239 gttgaatacttgtcaaaaatgagtaatcttagattgctgatcat 282  Q
    |||||| |||| |||||||||||||||||||||||||| |||||    
T  33410960 gttgaacacttttcaaaaatgagtaatcttagattgctcatcat 33410917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 33359699 - 33359657
Alignment:
Q  240 ttgaatacttgtcaaaaatgagtaatcttagattgctgatcat 282  Q
    ||||| |||||||||||||||||||||||||| |||| |||||    
T  33359699 ttgaacacttgtcaaaaatgagtaatcttagagtgctcatcat 33359657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 211
Target Start/End: Complemental strand, 9167828 - 9167791
Alignment:
Q  174 caatgctttaggaaaagcatgttgaagccatagttttg 211  Q
    |||| ||||||||||||||||||||||| |||||||||    
T  9167828 caattctttaggaaaagcatgttgaagcaatagttttg 9167791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 211
Target Start/End: Complemental strand, 33359759 - 33359722
Alignment:
Q  174 caatgctttaggaaaagcatgttgaagccatagttttg 211  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  33359759 caatactttaggaaaaacatgttgaagccatagttttg 33359722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 211
Target Start/End: Complemental strand, 33401670 - 33401633
Alignment:
Q  174 caatgctttaggaaaagcatgttgaagccatagttttg 211  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  33401670 caatgctttaggaaaagaatgttgaagccatacttttg 33401633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 33401825 - 33401761
Alignment:
Q  12 aagaaagtggagcaggctgtggtccaaaaaacaaatctacaatgttgtgatggagaatatggtaa 76  Q
    |||||| ||||||||| |||||||   ||||||| ||||| |||||  |||||||||||||||||    
T  33401825 aagaaaatggagcaggttgtggtctgcaaaacaactctacgatgttaagatggagaatatggtaa 33401761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 7971 - 7907
Alignment:
Q  12 aagaaagtggagcaggctgtggtccaaaaaacaaatctacaatgttgtgatggagaatatggtaa 76  Q
    |||||||||||||||| ||||||||||| ||||| |||||||||||  |||||||||||||||||    
T  7971 aagaaagtggagcaggatgtggtccaaacaacaactctacaatgttacgatggagaatatggtaa 7907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 282
Target Start/End: Complemental strand, 7389 - 7346
Alignment:
Q  239 gttgaatacttgtcaaaaatgagtaatcttagattgctgatcat 282  Q
    ||||||| |||||||| ||||||||||||||||||||| |||||    
T  7389 gttgaattcttgtcaacaatgagtaatcttagattgctaatcat 7346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 174 - 282
Target Start/End: Original strand, 17439857 - 17439959
Alignment:
Q  174 caatgctttaggaaaagcatgttgaagccatagttttggaatatgaagattatgatgaagaggaagttgaatacttgtcaaaaatgagtaatcttagatt 273  Q
    |||||||||||||||||||||||||||||||||||||| |||      ||  ||| || | ||| | |||| | ||||||||||||||||||||||||||    
T  17439857 caatgctttaggaaaagcatgttgaagccatagttttgaaat------atactgaagaggtggacgctgaacatttgtcaaaaatgagtaatcttagatt 17439950  T
Q  274 gctgatcat 282  Q
    ||| |||||    
T  17439951 gctcatcat 17439959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 31497786 - 31497854
Alignment:
Q  9 gagaagaaagtggagcaggctgtggtccaaaaaacaaatctacaatgttgtgatggagaatatggtaaa 77  Q
    ||||||||||||||||||| ||||||  ||| ||||| ||||| ||||| || ||||||||||||||||    
T  31497786 gagaagaaagtggagcaggttgtggttgaaagaacaattctacgatgttatgttggagaatatggtaaa 31497854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 31477989 - 31478026
Alignment:
Q  174 caatgctttaggaaaagcatgttgaagccatagttttg 211  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  31477989 caatgctttaggaaaagaatgttgaagccatagttttg 31478026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 31483839 - 31483876
Alignment:
Q  174 caatgctttaggaaaagcatgttgaagccatagttttg 211  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  31483839 caatgctttaggaaaagaatgttgaagccatagttttg 31483876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 211
Target Start/End: Complemental strand, 31527480 - 31527443
Alignment:
Q  174 caatgctttaggaaaagcatgttgaagccatagttttg 211  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  31527480 caatgttttaggaaaagaatgttgaagccatagttttg 31527443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 282
Target Start/End: Complemental strand, 1643 - 1600
Alignment:
Q  239 gttgaatacttgtcaaaaatgagtaatcttagattgctgatcat 282  Q
    ||||||| |||||||| ||||||||||||||||||||| |||||    
T  1643 gttgaattcttgtcaacaatgagtaatcttagattgctaatcat 1600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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