View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15596_high_9 (Length: 235)
Name: NF15596_high_9
Description: NF15596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15596_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 38608872 - 38609096
Alignment:
| Q |
1 |
tgtctatcgctgatcttgaaaagcttccagttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggtggaggagtggc |
100 |
Q |
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|||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
38608872 |
tgtcgatcgccgatcttgagaagcttccagttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggcggaggagtgac |
38608971 |
T |
|
| Q |
101 |
atcagcgccaatgaggattaactatgtgagagttaaggttgctgacgtcattcgcaatgtgaagatagttgtgcacaacgtgtatttgccttttccgcat |
200 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
38608972 |
atcagcgccgatgaggattaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaagatagttgtgcacagtgtgtatttgccttttccgcat |
38609071 |
T |
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| Q |
201 |
atcaatcctattgcggctgcctatg |
225 |
Q |
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|||||||||||||||||||| |||| |
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| T |
38609072 |
atcaatcctattgcggctgcttatg |
38609096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 38793655 - 38793879
Alignment:
| Q |
1 |
tgtctatcgctgatcttgaaaagcttccagttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggtggaggagtggc |
100 |
Q |
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|||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
38793655 |
tgtcgatcgccgatcttgagaagcttccagttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggcggaggagtgac |
38793754 |
T |
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| Q |
101 |
atcagcgccaatgaggattaactatgtgagagttaaggttgctgacgtcattcgcaatgtgaagatagttgtgcacaacgtgtatttgccttttccgcat |
200 |
Q |
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| T |
38793755 |
atcagcgccgatgaggattaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaagatagttgtgcacagtgtgtatttgccttttccgcat |
38793854 |
T |
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| Q |
201 |
atcaatcctattgcggctgcctatg |
225 |
Q |
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|||||||||||||||||||| |||| |
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| T |
38793855 |
atcaatcctattgcggctgcttatg |
38793879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 38121251 - 38121027
Alignment:
| Q |
1 |
tgtctatcgctgatcttgaaaagcttccagttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggtggaggagtggc |
100 |
Q |
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|||| ||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
38121251 |
tgtcaatcgccgatcttgagaagcttccggttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggcggaggagtgac |
38121152 |
T |
|
| Q |
101 |
atcagcgccaatgaggattaactatgtgagagttaaggttgctgacgtcattcgcaatgtgaagatagttgtgcacaacgtgtatttgccttttccgcat |
200 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
38121151 |
atcagcgccgatgaggattaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaagattgttgtgcacagcgtgtatttgccttttccgcat |
38121052 |
T |
|
| Q |
201 |
atcaatcctattgcggctgcctatg |
225 |
Q |
| |
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|||||||||||||||||||| |||| |
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| T |
38121051 |
atcaatcctattgcggctgcttatg |
38121027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 28730825 - 28730601
Alignment:
| Q |
1 |
tgtctatcgctgatcttgaaaagcttccagttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggtggaggagtggc |
100 |
Q |
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|||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
28730825 |
tgtcaatcgccgatcttgagaagcttccagttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggtggaggagtgac |
28730726 |
T |
|
| Q |
101 |
atcagcgccaatgaggattaactatgtgagagttaaggttgctgacgtcattcgcaatgtgaagatagttgtgcacaacgtgtatttgccttttccgcat |
200 |
Q |
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|| ||| || ||||||||||||||||| || || ||||||||||||||||| || |||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
28730725 |
attagcaccgatgaggattaactatgttagggtgaaggttgctgacgtcatccgtaatgtgaagatagttgtgcatagtgtgtatttgccttttccgcat |
28730626 |
T |
|
| Q |
201 |
atcaatcctattgcggctgcctatg |
225 |
Q |
| |
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|||||||||||||||| ||| |||| |
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| T |
28730625 |
atcaatcctattgcggatgcttatg |
28730601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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