View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15596_low_2 (Length: 556)

Name: NF15596_low_2
Description: NF15596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15596_low_2
NF15596_low_2
[»] chr4 (11 HSPs)
chr4 (500-556)||(23788258-23788314)
chr4 (90-194)||(15697083-15697187)
chr4 (91-194)||(7505565-7505668)
chr4 (153-193)||(22184540-22184580)
chr4 (90-194)||(48731173-48731277)
chr4 (90-193)||(9469814-9469917)
chr4 (90-193)||(56224182-56224285)
chr4 (87-176)||(80551-80640)
chr4 (96-193)||(36156300-36156397)
chr4 (153-193)||(38791729-38791769)
chr4 (153-193)||(52813638-52813678)
[»] chr6 (5 HSPs)
chr6 (86-176)||(10961792-10961882)
chr6 (90-185)||(8200676-8200771)
chr6 (90-190)||(5640252-5640352)
chr6 (96-176)||(18099870-18099950)
chr6 (90-194)||(22295952-22296056)
[»] chr3 (6 HSPs)
chr3 (90-191)||(19560774-19560875)
chr3 (90-193)||(33438731-33438834)
chr3 (88-193)||(39135391-39135496)
chr3 (90-194)||(25253738-25253842)
chr3 (153-193)||(52199466-52199506)
chr3 (90-193)||(54393443-54393546)
[»] chr7 (12 HSPs)
chr7 (89-193)||(7447918-7448022)
chr7 (89-176)||(37401565-37401652)
chr7 (153-200)||(388981-389028)
chr7 (150-188)||(8830559-8830597)
chr7 (90-194)||(11595796-11595900)
chr7 (153-193)||(33935550-33935590)
chr7 (153-193)||(44421964-44422004)
chr7 (151-194)||(33171595-33171638)
chr7 (98-193)||(45176287-45176382)
chr7 (91-176)||(18249994-18250079)
chr7 (153-194)||(45055769-45055810)
chr7 (153-193)||(42072125-42072165)
[»] chr8 (4 HSPs)
chr8 (89-176)||(33279976-33280063)
chr8 (164-236)||(43955910-43955982)
chr8 (189-236)||(42824531-42824578)
chr8 (145-222)||(12378360-12378437)
[»] chr1 (16 HSPs)
chr1 (90-193)||(7016075-7016178)
chr1 (99-168)||(20349208-20349277)
chr1 (89-193)||(25124884-25124988)
chr1 (89-176)||(24575963-24576050)
chr1 (90-193)||(35810755-35810858)
chr1 (88-193)||(14578583-14578688)
chr1 (99-176)||(20347720-20347797)
chr1 (153-200)||(35309600-35309647)
chr1 (90-193)||(47602862-47602965)
chr1 (89-176)||(47983309-47983396)
chr1 (90-191)||(15014354-15014455)
chr1 (153-194)||(19508564-19508605)
chr1 (90-127)||(23916913-23916950)
chr1 (93-193)||(15662986-15663086)
chr1 (150-190)||(43087526-43087566)
chr1 (88-120)||(50447451-50447483)
[»] scaffold0260 (2 HSPs)
scaffold0260 (99-168)||(11531-11600)
scaffold0260 (99-176)||(10043-10120)
[»] chr2 (9 HSPs)
chr2 (89-176)||(27464571-27464658)
chr2 (153-194)||(44740546-44740587)
chr2 (151-193)||(2578116-2578158)
chr2 (90-176)||(20203714-20203800)
chr2 (90-176)||(40458975-40459061)
chr2 (153-194)||(2647037-2647078)
chr2 (153-229)||(41071168-41071245)
chr2 (153-193)||(24844729-24844769)
chr2 (153-193)||(41959180-41959220)
[»] chr5 (7 HSPs)
chr5 (90-190)||(20189013-20189113)
chr5 (90-193)||(3801364-3801467)
chr5 (90-193)||(38522861-38522964)
chr5 (153-194)||(14500769-14500810)
chr5 (153-194)||(26218083-26218124)
chr5 (153-193)||(1840750-1840790)
chr5 (153-193)||(19282177-19282217)


Alignment Details
Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 500 - 556
Target Start/End: Complemental strand, 23788314 - 23788258
Alignment:
Q  500 tgtagcaacaagacaaatatttgaagaaataccctcgaacaatattacaagtgaatg 556  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  23788314 tgtagcaacaagacaaatatttgaagaaataccctcgaacaatattacaagtcaatg 23788258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 90 - 194
Target Start/End: Original strand, 15697083 - 15697187
Alignment:
Q  90 tagggctgacaatcaaccaaaccaactcgaataaagtttaaaatttgactcaatgattgatttgttgaacttgattcatgaaccaaacaagctgaacttg 189  Q
    ||||||||||||| |||| |  ||||||||||||||||  | | | ||||| |  ||||||| |||||||||||||||||||||||| ||||||||||||    
T  15697083 tagggctgacaatgaaccgagacaactcgaataaagttcgagactcgactcgacaattgattcgttgaacttgattcatgaaccaaataagctgaacttg 15697182  T
Q  190 agcta 194  Q
    |||||    
T  15697183 agcta 15697187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 91 - 194
Target Start/End: Complemental strand, 7505668 - 7505565
Alignment:
Q  91 agggctgacaatcaaccaaaccaactcgaataaagtttaaaatttgactcaatgattgatttgttgaacttgattcatgaaccaaacaagctgaacttga 190  Q
    |||||||||||| |||| |  |||||||||||||||| | || |||||||  | |||  || ||||||||||||||||||||||||  ||| ||||||||    
T  7505668 agggctgacaatgaaccgatacaactcgaataaagttcagaacttgactcggtaattagttcgttgaacttgattcatgaaccaaatgagccgaacttga 7505569  T
Q  191 gcta 194  Q
    ||||    
T  7505568 gcta 7505565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 22184580 - 22184540
Alignment:
Q  153 gttgaacttgattcatgaaccaaacaagctgaacttgagct 193  Q
    |||||||||| |||||||||||||| |||||||||||||||    
T  22184580 gttgaacttggttcatgaaccaaacgagctgaacttgagct 22184540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 194
Target Start/End: Original strand, 48731173 - 48731277
Alignment:
Q  90 tagggctgacaatcaaccaaaccaactcgaataaagtttaaaatttgactcaatgattgatttgttgaacttgattcatgaaccaaacaagctgaacttg 189  Q
    |||||||| |||| |||| |||||||||||||| ||||  ||||| ||||| |  |||| |   ||||| ||| ||||||||||||| || |||||||||    
T  48731173 tagggctgccaatgaaccgaaccaactcgaatatagttcgaaattcgactcgacaattggtccattgaatttggttcatgaaccaaataaactgaacttg 48731272  T
Q  190 agcta 194  Q
    |||||    
T  48731273 agcta 48731277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 193
Target Start/End: Complemental strand, 9469917 - 9469814
Alignment:
Q  90 tagggctgacaatcaaccaaaccaactcgaataaagtttaaaatttgactcaatgattgatttgttgaacttgattcatgaaccaaacaagctgaacttg 189  Q
    ||||||||||||| |||| |||||||||||||| ||||   |||| ||||| |  |||| | | ||||||||| |||||||||||||  |||  ||||||    
T  9469917 tagggctgacaatgaaccgaaccaactcgaatatagttcgtaattcgactcgacaattggtctattgaacttggttcatgaaccaaatgagccaaacttg 9469818  T
Q  190 agct 193  Q
    ||||    
T  9469817 agct 9469814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 193
Target Start/End: Complemental strand, 56224285 - 56224182
Alignment:
Q  90 tagggctgacaatcaaccaaaccaactcgaataaagtttaaaatttgactcaatgattgatttgttgaacttgattcatgaaccaaacaagctgaacttg 189  Q
    ||||||||||||| |||| ||||||||| || | ||||  ||| |||||||||  ||| ||| |||||||||| || || |||||||  ||| |||||||    
T  56224285 tagggctgacaatgaaccgaaccaactcaaacatagttcgaaacttgactcaacaattaattcgttgaacttggttaataaaccaaatgagccgaacttg 56224186  T
Q  190 agct 193  Q
    ||||    
T  56224185 agct 56224182  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 176
Target Start/End: Complemental strand, 80640 - 80551
Alignment:
Q  87 taatagggctgacaatcaaccaaaccaactcgaataaagtttaaaatttgactcaatgattgatttgttgaacttgattcatgaaccaaa 176  Q
    ||||||||||| |||| |||| | |||||||||| | ||||  |||||||| ||  | |||| || |||||||||| |||||||||||||    
T  80640 taatagggctggcaatgaaccgatccaactcgaaaatagttcgaaatttgattcggtaattgtttcgttgaacttggttcatgaaccaaa 80551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 193
Target Start/End: Original strand, 36156300 - 36156397
Alignment:
Q  96 tgacaatcaaccaaaccaactcgaataaagtttaaaatttgactcaatgattgatttgttgaacttgattcatgaaccaaacaagctgaacttgagct 193  Q
    ||||||| |||| ||||||||||| |||||||   |||| || || |  ||||||| |||||||||| ||| |||||||||  ||| |||||||||||    
T  36156300 tgacaatgaaccgaaccaactcgattaaagttcgtaattcgattcgacaattgattcgttgaacttggttcttgaaccaaatgagccgaacttgagct 36156397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 38791769 - 38791729
Alignment:
Q  153 gttgaacttgattcatgaaccaaacaagctgaacttgagct 193  Q
    |||||||||| |||||||||||||  |||||||||||||||    
T  38791769 gttgaacttggttcatgaaccaaatgagctgaacttgagct 38791729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 52813678 - 52813638
Alignment:
Q  153 gttgaacttgattcatgaaccaaacaagctgaacttgagct 193  Q
    |||||||||| |||||||||||||| |||||||||| ||||    
T  52813678 gttgaacttggttcatgaaccaaacgagctgaacttaagct 52813638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 86 - 176
Target Start/End: Original strand, 10961792 - 10961882
Alignment:
Q  86 ataatagggctgacaatcaaccaaaccaactcgaataaagtttaaaatttgactcaatgattgatttgttgaacttgattcatgaaccaaa 176  Q
    |||||||||||| |||| |||| ||||||||||| ||||||||  ||||||| || |  ||||||| |||||||||| |||||||||||||    
T  10961792 ataatagggctggcaatgaaccgaaccaactcgattaaagtttgtaatttgattcgacaattgattcgttgaacttggttcatgaaccaaa 10961882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 90 - 185
Target Start/End: Complemental strand, 8200771 - 8200676
Alignment:
Q  90 tagggctgacaatcaaccaaaccaactcgaataaagtttaaaatttgactcaatgattgatttgttgaacttgattcatgaaccaaacaagctgaa 185  Q
    ||||||||||||| |||||||||||||||| || ||||  | ||| ||||| ||  || ||  ||||||||||||||||||||| ||| |||||||    
T  8200771 tagggctgacaatgaaccaaaccaactcgattatagttcgacattcgactcgatatttaatccgttgaacttgattcatgaacctaacgagctgaa 8200676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 90 - 190
Target Start/End: Original strand, 5640252 - 5640352
Alignment:
Q  90 tagggctgacaatcaaccaaaccaactcgaataaagtttaaaatttgactcaatgattgatttgttgaacttgattcatgaaccaaacaagctgaacttg 189  Q
    |||||||| |||| |||| ||||||||||| || ||||   |||| || || || ||||||| || ||||||| |||||||||||||  ||| |||||||    
T  5640252 tagggctggcaatgaaccgaaccaactcgattagagttcgtaattcgattcgataattgattcgtcgaacttggttcatgaaccaaatgagccgaacttg 5640351  T
Q  190 a 190  Q
    |    
T  5640352 a 5640352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 96 - 176
Target Start/End: Complemental strand, 18099950 - 18099870
Alignment:
Q  96 tgacaatcaaccaaaccaactcgaataaagtttaaaatttgactcaatgattgatttgttgaacttgattcatgaaccaaa 176  Q
    ||||||| ||||||||||||||||| ||||||| | | | || || || || |||| |||||||||| |||| ||||||||    
T  18099950 tgacaatgaaccaaaccaactcgaaaaaagtttgagactcgattcgataatggattcgttgaacttggttcacgaaccaaa 18099870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 90 - 194
Target Start/End: Complemental strand, 22296056 - 22295952
Alignment:
Q  90 tagggctgacaatcaaccaaaccaactcgaataaagtttaaaatttgactcaatgattgatttgttgaacttgattcatgaaccaaacaagctgaacttg 189  Q
    |||||||| |||| ||||||  ||||| ||||||||||   || | |||||| | |||  ||| || |||||| |||||||||||||| ||| |||||||    
T  22296056 tagggctgccaatgaaccaagacaacttgaataaagttcggaactcgactcagtaattagtttattaaacttggttcatgaaccaaacgagccgaacttg 22295957  T
Q  190 agcta 194  Q
    |||||    
T  22295956 agcta 22295952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 90 - 191
Target Start/End: Original strand, 19560774 - 19560875
Alignment:
Q  90 tagggctgacaatcaaccaaaccaactcgaataaagtttaaaatttgactcaatgattgatttgttgaacttgattcatgaaccaaacaagctgaacttg 189  Q
    |||||||| |||| |||| |||||||||||||| ||||   |||| ||||| |  ||| ||| |||||||||| ||||||||| ||||||||||||||||    
T  19560774 tagggctggcaatgaaccgaaccaactcgaatatagttcggaattcgactcgacaattaattcgttgaacttggttcatgaacgaaacaagctgaacttg 19560873  T
Q  190 ag 191  Q
    ||    
T  19560874 ag 19560875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 193
Target Start/End: Original strand, 33438731 - 33438834
Alignment:
Q  90 tagggctgacaatcaaccaaaccaactcgaataaagtttaaaatttgactcaatgattgatttgttgaacttgattcatgaaccaaacaagctgaacttg 189  Q
    ||||||||||||| |||| ||||||||||| ||||||||  |||| || || |  ||||||| |||||||||| |||||||||||||  ||  |||||||    
T  33438731 tagggctgacaatgaaccgaaccaactcgattaaagtttgtaattcgattcgacaattgattcgttgaacttggttcatgaaccaaatgagtcgaacttg 33438830  T
Q  190 agct 193  Q
    ||||    
T  33438831 agct 33438834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 88 - 193
Target Start/End: Complemental strand, 39135496 - 39135391
Alignment:
Q  88 aatagggctgacaatcaaccaaaccaactcgaataaagtttaaaatttgactcaatgattgatttgttgaacttgattcatgaaccaaacaagctgaact 187  Q
    |||||||||| |||| |||| |||||||||||||| |||| | |||| ||||| |  |||| ||  ||||||||| |||||||||||||  ||| |||||    
T  39135496 aatagggctggcaataaaccgaaccaactcgaatatagttcataattcgactcgacaattggttcattgaacttggttcatgaaccaaatgagccgaact 39135397  T
Q  188 tgagct 193  Q
    ||||||    
T  39135396 tgagct 39135391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 194
Target Start/End: Complemental strand, 25253842 - 25253738
Alignment:
Q  90 tagggctgacaatcaaccaaaccaactcgaataaagtttaaaatttgactcaatgattgatttgttgaacttgattcatgaaccaaacaagctgaacttg 189  Q
    |||||||| |||| |||| |||||||||||||| |||||  || | ||||| |  ||  | |||||||||||| |||||||||||||  |||||||||||    
T  25253842 tagggctggcaatgaaccgaaccaactcgaatatagtttggaactcgactcgacaataaacttgttgaacttggttcatgaaccaaatgagctgaacttg 25253743  T
Q  190 agcta 194  Q
    |||||    
T  25253742 agcta 25253738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 52199506 - 52199466
Alignment:
Q  153 gttgaacttgattcatgaaccaaacaagctgaacttgagct 193  Q
    |||||||||| |||||||||||||| |||||||||||||||    
T  52199506 gttgaacttggttcatgaaccaaacgagctgaacttgagct 52199466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 193
Target Start/End: Original strand, 54393443 - 54393546
Alignment:
Q  90 tagggctgacaatcaaccaaaccaactcgaataaagtttaaaatttgactcaatgattgatttgttgaacttgattcatgaaccaaacaagctgaacttg 189  Q
    |||||||| |||| |||| ||||||||||| |||||||   |||| || || |  ||||||| |||||||||| ||||| |||||||  ||| |||||||    
T  54393443 tagggctggcaatgaaccgaaccaactcgattaaagttcgtaattcgattcgacaattgattcgttgaacttggttcataaaccaaatgagccgaacttg 54393542  T
Q  190 agct 193  Q
    ||||    
T  54393543 agct 54393546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 89 - 193
Target Start/End: Complemental strand, 7448022 - 7447918
Alignment:
Q  89 atagggctgacaatcaaccaaaccaactcgaataaagtttaaaatttgactcaatgattgatttgttgaacttgattcatgaaccaaacaagctgaactt 188  Q
    |||||||||||||| |||| |||||||||||||| |||| | |||| ||||| |  |||| ||  ||||||||| |||||||||||||  ||| ||||||    
T  7448022 atagggctgacaatgaaccgaaccaactcgaatatagttcataattcgactcgacaattggttcattgaacttggttcatgaaccaaatgagccgaactt 7447923  T
Q  189 gagct 193  Q
    |||||    
T  7447922 gagct 7447918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 37401565 - 37401652
Alignment:
Q  89 atagggctgacaatcaaccaaaccaactcgaataaagtttaaaatttgactcaatgattgatttgttgaacttgattcatgaaccaaa 176  Q
    |||||||||||||| ||||||||||| |||| || ||||   |||| || || |  ||||||||||||||||||||||||||||||||    
T  37401565 atagggctgacaatgaaccaaaccaattcgattagagttcgtaattcgattcgaaaattgatttgttgaacttgattcatgaaccaaa 37401652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 153 - 200
Target Start/End: Complemental strand, 389028 - 388981
Alignment:
Q  153 gttgaacttgattcatgaaccaaacaagctgaacttgagctacatata 200  Q
    |||||||||| |||||||||| ||| ||||||||||||||||||||||    
T  389028 gttgaacttggttcatgaacctaacgagctgaacttgagctacatata 388981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Original strand, 8830559 - 8830597
Alignment:
Q  150 tttgttgaacttgattcatgaaccaaacaagctgaactt 188  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  8830559 tttgttgaacttgattcatgaaccaaacaagttgaactt 8830597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 194
Target Start/End: Original strand, 11595796 - 11595900
Alignment:
Q  90 tagggctgacaatcaaccaaaccaactcgaataaagtttaaaatttgactcaatgattgatttgttgaacttgattcatgaaccaaacaagctgaacttg 189  Q
    ||||||||||||| |||| |  ||||||||||||||||   || | |||||  | |||  || |||||||||| |||||||||||||| ||| |||||||    
T  11595796 tagggctgacaatgaaccgatacaactcgaataaagttcggaactcgactcggtaattagttcgttgaacttggttcatgaaccaaacgagccgaacttg 11595895  T
Q  190 agcta 194  Q
    |||||    
T  11595896 agcta 11595900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 33935590 - 33935550
Alignment:
Q  153 gttgaacttgattcatgaaccaaacaagctgaacttgagct 193  Q
    |||||||||| |||||||||||||| |||||||||||||||    
T  33935590 gttgaacttggttcatgaaccaaacgagctgaacttgagct 33935550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 44421964 - 44422004
Alignment:
Q  153 gttgaacttgattcatgaaccaaacaagctgaacttgagct 193  Q
    |||||||||| |||||||||||||| |||||||||||||||    
T  44421964 gttgaacttggttcatgaaccaaacgagctgaacttgagct 44422004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 194
Target Start/End: Original strand, 33171595 - 33171638
Alignment:
Q  151 ttgttgaacttgattcatgaaccaaacaagctgaacttgagcta 194  Q
    ||||||||||||||| ||||||||||  ||||||||||||||||    
T  33171595 ttgttgaacttgatttatgaaccaaatgagctgaacttgagcta 33171638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 193
Target Start/End: Complemental strand, 45176382 - 45176287
Alignment:
Q  98 acaatcaaccaaaccaactcgaataaagtttaaaatttgactcaatgattgatttgttgaacttgattcatgaaccaaacaagctgaacttgagct 193  Q
    ||||| |||| ||| ||||||| || ||||| | ||| ||||| || ||| ||  |||||||||| |||||||||||||| |||||||||| ||||    
T  45176382 acaatgaaccgaacaaactcgattatagtttgacattcgactcgataattaatccgttgaacttggttcatgaaccaaacgagctgaactttagct 45176287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 176
Target Start/End: Original strand, 18249994 - 18250079
Alignment:
Q  91 agggctgacaatcaaccaaaccaactcgaataaagtttaaaatttgactcaatgattgatttgttgaacttgattcatgaaccaaa 176  Q
    ||||||| |||| |||| |||||||||||| | |||| || | | || || || ||||||| |||||||||| |||||||||||||    
T  18249994 agggctggcaatgaaccgaaccaactcgaaaatagttcaagactcgattcgataattgattcgttgaacttggttcatgaaccaaa 18250079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 45055810 - 45055769
Alignment:
Q  153 gttgaacttgattcatgaaccaaacaagctgaacttgagcta 194  Q
    |||||||||| |||||||||||||| ||| ||||||||||||    
T  45055810 gttgaacttggttcatgaaccaaacgagccgaacttgagcta 45055769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 42072165 - 42072125
Alignment:
Q  153 gttgaacttgattcatgaaccaaacaagctgaacttgagct 193  Q
    ||||||||||||||||||||| ||| ||||| |||||||||    
T  42072165 gttgaacttgattcatgaacctaacgagctggacttgagct 42072125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 33279976 - 33280063
Alignment:
Q  89 atagggctgacaatcaaccaaaccaactcgaataaagtttaaaatttgactcaatgattgatttgttgaacttgattcatgaaccaaa 176  Q
    |||||||||||||| |||| ||||||||||| |||||||   ||||||| || || ||||||| || ||||||| |||||||||||||    
T  33279976 atagggctgacaatgaaccgaaccaactcgattaaagttcgtaatttgattcgataattgattcgtcgaacttggttcatgaaccaaa 33280063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 164 - 236
Target Start/End: Original strand, 43955910 - 43955982
Alignment:
Q  164 ttcatgaaccaaacaagctgaacttgagctacatataatttaacttatttgatttatgagttgacttgattat 236  Q
    |||||||||||||  |||||||||| ||||| ||||||||  |||||||||||| || |||| ||| ||||||    
T  43955910 ttcatgaaccaaatgagctgaacttaagctatatataattcgacttatttgattcataagttaactcgattat 43955982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 236
Target Start/End: Original strand, 42824531 - 42824578
Alignment:
Q  189 gagctacatataatttaacttatttgatttatgagttgacttgattat 236  Q
    ||||||||||||||||||||| ||||||| ||||| | ||||||||||    
T  42824531 gagctacatataatttaacttgtttgattaatgagctaacttgattat 42824578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 222
Target Start/End: Complemental strand, 12378437 - 12378360
Alignment:
Q  145 attgatttgttgaacttgattcatgaaccaaacaagctgaacttgagctacatataatttaacttatttgatttatga 222  Q
    ||||||| |||||||||| |||| ||||||||  || |||||||||||||  ||| |||  ||||||||| |||||||    
T  12378437 attgattcgttgaacttggttcacgaaccaaatgagttgaacttgagctaagtatgattcgacttatttggtttatga 12378360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 193
Target Start/End: Original strand, 7016075 - 7016178
Alignment:
Q  90 tagggctgacaatcaaccaaaccaactcgaataaagtttaaaatttgactcaatgattgatttgttgaacttgattcatgaaccaaacaagctgaacttg 189  Q
    ||||||||||||| |||| |||||||||||| ||| ||  | | | || || |  |||||||||||||||||| |||||||||||||  |||||||||||    
T  7016075 tagggctgacaatgaaccgaaccaactcgaacaaaattcgagactcgattcgacaattgatttgttgaacttggttcatgaaccaaatgagctgaacttg 7016174  T
Q  190 agct 193  Q
    ||||    
T  7016175 agct 7016178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 20349277 - 20349208
Alignment:
Q  99 caatcaaccaaaccaactcgaataaagtttaaaatttgactcaatgattgatttgttgaacttgattcat 168  Q
    |||| |||| |||||||||||| | ||||||||||||||||| || ||| ||| ||||||||||||||||    
T  20349277 caatgaaccgaaccaactcgaacatagtttaaaatttgactcgataattaattcgttgaacttgattcat 20349208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 193
Target Start/End: Original strand, 25124884 - 25124988
Alignment:
Q  89 atagggctgacaatcaaccaaaccaactcgaataaagtttaaaatttgactcaatgattgatttgttgaacttgattcatgaaccaaacaagctgaactt 188  Q
    ||||||||| |||| |||| ||||||||||| |||||||   |||| || |  || ||||||| |||||||||| |||||||||||||  ||| ||||||    
T  25124884 atagggctggcaatgaaccgaaccaactcgattaaagttcgtaattcgatttgataattgattcgttgaacttggttcatgaaccaaatgagccgaactt 25124983  T
Q  189 gagct 193  Q
    |||||    
T  25124984 gagct 25124988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 89 - 176
Target Start/End: Complemental strand, 24576050 - 24575963
Alignment:
Q  89 atagggctgacaatcaaccaaaccaactcgaataaagtttaaaatttgactcaatgattgatttgttgaacttgattcatgaaccaaa 176  Q
    |||||||||||||| |||| |||||||||||| | ||||  | |||||| || || ||||| | |||||||||| |||||||||||||    
T  24576050 atagggctgacaatgaaccgaaccaactcgaaaatagttcgagatttgattcgataattgactcgttgaacttggttcatgaaccaaa 24575963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 90 - 193
Target Start/End: Complemental strand, 35810858 - 35810755
Alignment:
Q  90 tagggctgacaatcaaccaaaccaactcgaataaagtttaaaatttgactcaatgattgatttgttgaacttgattcatgaaccaaacaagctgaacttg 189  Q
    |||||||| |||| |||| ||||||||||| |||||||   |||| || || |  ||||||| |||||||||| |||||||||||||  ||| |||||||    
T  35810858 tagggctggcaatgaaccgaaccaactcgattaaagttcgtaattcgattcgacaattgattcgttgaacttggttcatgaaccaaatgagccgaacttg 35810759  T
Q  190 agct 193  Q
    ||||    
T  35810758 agct 35810755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 88 - 193
Target Start/End: Original strand, 14578583 - 14578688
Alignment:
Q  88 aatagggctgacaatcaaccaaaccaactcgaataaagtttaaaatttgactcaatgattgatttgttgaacttgattcatgaaccaaacaagctgaact 187  Q
    ||||||||||||||| |||| ||||||||||| || ||||   |||| || |  |  |||||||||||||||||| |||||||||||||  ||| |||||    
T  14578583 aatagggctgacaatgaaccgaaccaactcgattagagttcgtaattcgattagacaattgatttgttgaacttggttcatgaaccaaatgagccgaact 14578682  T
Q  188 tgagct 193  Q
     |||||    
T  14578683 ggagct 14578688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 99 - 176
Target Start/End: Complemental strand, 20347797 - 20347720
Alignment:
Q  99 caatcaaccaaaccaactcgaataaagtttaaaatttgactcaatgattgatttgttgaacttgattcatgaaccaaa 176  Q
    |||| |||| || ||||||||||| ||||||||||||||||| |  ||| ||| |||||| |||||||||| ||||||    
T  20347797 caatgaaccgaatcaactcgaatatagtttaaaatttgactcgacaattaattcgttgaatttgattcatgtaccaaa 20347720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 200
Target Start/End: Complemental strand, 35309647 - 35309600
Alignment:
Q  153 gttgaacttgattcatgaaccaaacaagctgaacttgagctacatata 200  Q
    |||||||||| ||||||||||  || ||||||||||||||||||||||    
T  35309647 gttgaacttggttcatgaacctcacgagctgaacttgagctacatata 35309600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 193
Target Start/End: Original strand, 47602862 - 47602965
Alignment:
Q  90 tagggctgacaatcaaccaaaccaactcgaataaagtttaaaatttgactcaatgattgatttgttgaacttgattcatgaaccaaacaagctgaacttg 189  Q
    ||||||||||||| |||| ||||||||||| || ||||  | ||| ||||| ||  || ||  |||||||||| |||||||||| ||| ||||| |||||    
T  47602862 tagggctgacaatgaaccgaaccaactcgattatagttcgacattcgactcgatatttaatccgttgaacttggttcatgaacctaacgagctggacttg 47602961  T
Q  190 agct 193  Q
    ||||    
T  47602962 agct 47602965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 176
Target Start/End: Complemental strand, 47983396 - 47983309
Alignment:
Q  89 atagggctgacaatcaaccaaaccaactcgaataaagtttaaaatttgactcaatgattgatttgttgaacttgattcatgaaccaaa 176  Q
    |||||| ||||||| |||| |||||||||||| | ||||  | ||| || || || |||||||||||||||||| |||| ||||||||    
T  47983396 atagggttgacaatgaaccgaaccaactcgaaaatagttcgagattcgattcgataattgatttgttgaacttggttcacgaaccaaa 47983309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 191
Target Start/End: Complemental strand, 15014455 - 15014354
Alignment:
Q  90 tagggctgacaatcaaccaaaccaactcgaataaagtttaaaatttgactcaatgattgatttgttgaacttgattcatgaaccaaacaagctgaacttg 189  Q
    ||||| || |||| |||| ||||||||||| || ||||   |||| || || || ||||||| || |||||||||||||||||||||  ||| |||||||    
T  15014455 tagggttggcaatgaaccgaaccaactcgattagagttcgtaattcgattcgataattgattcgtcgaacttgattcatgaaccaaatgagccgaacttg 15014356  T
Q  190 ag 191  Q
    ||    
T  15014355 ag 15014354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 19508605 - 19508564
Alignment:
Q  153 gttgaacttgattcatgaaccaaacaagctgaacttgagcta 194  Q
    |||||||||| |||||||||||||| ||| ||||||||||||    
T  19508605 gttgaacttggttcatgaaccaaacgagccgaacttgagcta 19508564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 23916950 - 23916913
Alignment:
Q  90 tagggctgacaatcaaccaaaccaactcgaataaagtt 127  Q
    ||||||||||||| |||||||||||||||| |||||||    
T  23916950 tagggctgacaatgaaccaaaccaactcgattaaagtt 23916913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 93 - 193
Target Start/End: Complemental strand, 15663086 - 15662986
Alignment:
Q  93 ggctgacaatcaaccaaaccaactcgaataaagtttaaaatttgactcaatgattgatttgttgaacttgattcatgaaccaaacaagctgaacttgagc 192  Q
    |||||||||| |||| ||||||||| | || |||||  ||||  | ||||| ||||||| || ||||||| |||||| ||||||  ||| ||||||||||    
T  15663086 ggctgacaatgaaccgaaccaactcaattagagtttgtaattcaattcaataattgattcgtcgaacttggttcatgtaccaaatgagccgaacttgagc 15662987  T
Q  193 t 193  Q
    |    
T  15662986 t 15662986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 190
Target Start/End: Original strand, 43087526 - 43087566
Alignment:
Q  150 tttgttgaacttgattcatgaaccaaacaagctgaacttga 190  Q
    ||||||||||||| |||||||||||||| ||| ||||||||    
T  43087526 tttgttgaacttggttcatgaaccaaacgagccgaacttga 43087566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 88 - 120
Target Start/End: Complemental strand, 50447483 - 50447451
Alignment:
Q  88 aatagggctgacaatcaaccaaaccaactcgaa 120  Q
    ||||||||||||||| |||||||||||||||||    
T  50447483 aatagggctgacaatgaaccaaaccaactcgaa 50447451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0260 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 11600 - 11531
Alignment:
Q  99 caatcaaccaaaccaactcgaataaagtttaaaatttgactcaatgattgatttgttgaacttgattcat 168  Q
    |||| |||| |||||||||||| | ||||||||||||||||| || ||| ||| ||||||||||||||||    
T  11600 caatgaaccgaaccaactcgaacatagtttaaaatttgactcgataattaattcgttgaacttgattcat 11531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0260; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 99 - 176
Target Start/End: Complemental strand, 10120 - 10043
Alignment:
Q  99 caatcaaccaaaccaactcgaataaagtttaaaatttgactcaatgattgatttgttgaacttgattcatgaaccaaa 176  Q
    |||| |||| || ||||||||||| ||||||||||||||||| |  ||| ||| |||||| |||||||||| ||||||    
T  10120 caatgaaccgaatcaactcgaatatagtttaaaatttgactcgacaattaattcgttgaatttgattcatgtaccaaa 10043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 27464571 - 27464658
Alignment:
Q  89 atagggctgacaatcaaccaaaccaactcgaataaagtttaaaatttgactcaatgattgatttgttgaacttgattcatgaaccaaa 176  Q
    |||||||||||||| |||| |||||||||||| | ||||  | | |||| || || |||||||||||||| ||| |||||||||||||    
T  27464571 atagggctgacaatgaaccgaaccaactcgaaaatagttcgagacttgattcgataattgatttgttgaatttggttcatgaaccaaa 27464658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 44740546 - 44740587
Alignment:
Q  153 gttgaacttgattcatgaaccaaacaagctgaacttgagcta 194  Q
    |||||||||| |||||||||||||| ||||||||||||||||    
T  44740546 gttgaacttggttcatgaaccaaacgagctgaacttgagcta 44740587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 151 - 193
Target Start/End: Complemental strand, 2578158 - 2578116
Alignment:
Q  151 ttgttgaacttgattcatgaaccaaacaagctgaacttgagct 193  Q
    ||||||||||||||||||||| ||||  |||||||||||||||    
T  2578158 ttgttgaacttgattcatgaatcaaatgagctgaacttgagct 2578116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 90 - 176
Target Start/End: Original strand, 20203714 - 20203800
Alignment:
Q  90 tagggctgacaatcaaccaaaccaactcgaataaagtttaaaatttgactcaatgattgatttgttgaacttgattcatgaaccaaa 176  Q
    |||||||  |||| |||| ||||||||||| |||||||   |||| || ||||  ||||||| |||||||||| |||||||||||||    
T  20203714 tagggctagcaattaaccgaaccaactcgattaaagttcgtaattcgattcaacaattgattcgttgaacttggttcatgaaccaaa 20203800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 90 - 176
Target Start/End: Complemental strand, 40459061 - 40458975
Alignment:
Q  90 tagggctgacaatcaaccaaaccaactcgaataaagtttaaaatttgactcaatgattgatttgttgaacttgattcatgaaccaaa 176  Q
    ||||||||||||| |||| |||||||| ||| | ||||| | | | || ||||| |||| ||||||||||||| |||| ||||||||    
T  40459061 tagggctgacaatgaaccgaaccaacttgaaaatagtttgatactcgattcaataattggtttgttgaacttggttcacgaaccaaa 40458975  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 2647037 - 2647078
Alignment:
Q  153 gttgaacttgattcatgaaccaaacaagctgaacttgagcta 194  Q
    |||||||||| |||||||||||||| ||| ||||||||||||    
T  2647037 gttgaacttggttcatgaaccaaacgagccgaacttgagcta 2647078  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 229
Target Start/End: Complemental strand, 41071245 - 41071168
Alignment:
Q  153 gttgaacttgattcatgaaccaaacaagctgaacttga-gctacatataatttaacttatttgatttatgagttgact 229  Q
    |||||| |||||||||||| ||||  || ||||||| | | || ||||||||||||||||||||||||| | ||||||    
T  41071245 gttgaatttgattcatgaatcaaaatagttgaactttaagttatatataatttaacttatttgatttataaattgact 41071168  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 24844729 - 24844769
Alignment:
Q  153 gttgaacttgattcatgaaccaaacaagctgaacttgagct 193  Q
    |||||||||| |||||||||||||  |||||||||||||||    
T  24844729 gttgaacttggttcatgaaccaaatgagctgaacttgagct 24844769  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 41959220 - 41959180
Alignment:
Q  153 gttgaacttgattcatgaaccaaacaagctgaacttgagct 193  Q
    ||||||||||||||||||||| ||| ||||| |||||||||    
T  41959220 gttgaacttgattcatgaacctaacgagctggacttgagct 41959180  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 190
Target Start/End: Complemental strand, 20189113 - 20189013
Alignment:
Q  90 tagggctgacaatcaaccaaaccaactcgaataaagtttaaaatttgactcaatgattgatttgttgaacttgattcatgaaccaaacaagctgaacttg 189  Q
    ||||||||||||| |||| || |||||||| || ||||   ||||||| || || ||||||| || ||||||| |||||||||||||  ||| |||||||    
T  20189113 tagggctgacaatgaaccgaatcaactcgattagagttcgtaatttgattcgataattgattcgtcgaacttggttcatgaaccaaatgagccgaacttg 20189014  T
Q  190 a 190  Q
    |    
T  20189013 a 20189013  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 193
Target Start/End: Original strand, 3801364 - 3801467
Alignment:
Q  90 tagggctgacaatcaaccaaaccaactcgaataaagtttaaaatttgactcaatgattgatttgttgaacttgattcatgaaccaaacaagctgaacttg 189  Q
    |||||||| |||| |||| |||||||||||||| ||||   |||| ||||| |  |||| ||  ||||||||| |||||||||||||  ||| |||||||    
T  3801364 tagggctggcaatgaaccgaaccaactcgaatatagttcgtaattcgactcgacaattggttcattgaacttggttcatgaaccaaatgagccgaacttg 3801463  T
Q  190 agct 193  Q
    ||||    
T  3801464 agct 3801467  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 193
Target Start/End: Original strand, 38522861 - 38522964
Alignment:
Q  90 tagggctgacaatcaaccaaaccaactcgaataaagtttaaaatttgactcaatgattgatttgttgaacttgattcatgaaccaaacaagctgaacttg 189  Q
    |||||||| |||| |||| |||||||||||||| ||||   |||||||||| || |||| |   ||||||||| |||||||||||||  |||  ||||||    
T  38522861 tagggctggcaatgaaccgaaccaactcgaatatagttcgtaatttgactcgataattggtccattgaacttggttcatgaaccaaatgagccaaacttg 38522960  T
Q  190 agct 193  Q
    ||||    
T  38522961 agct 38522964  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 14500769 - 14500810
Alignment:
Q  153 gttgaacttgattcatgaaccaaacaagctgaacttgagcta 194  Q
    |||||||||| |||||||||||||| ||| ||||||||||||    
T  14500769 gttgaacttggttcatgaaccaaacgagccgaacttgagcta 14500810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 26218124 - 26218083
Alignment:
Q  153 gttgaacttgattcatgaaccaaacaagctgaacttgagcta 194  Q
    |||||||||| |||||||||||||| ||| ||||||||||||    
T  26218124 gttgaacttggttcatgaaccaaacgagccgaacttgagcta 26218083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 1840750 - 1840790
Alignment:
Q  153 gttgaacttgattcatgaaccaaacaagctgaacttgagct 193  Q
    |||||||||| |||||||||||||  |||||||||||||||    
T  1840750 gttgaacttggttcatgaaccaaatgagctgaacttgagct 1840790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 19282177 - 19282217
Alignment:
Q  153 gttgaacttgattcatgaaccaaacaagctgaacttgagct 193  Q
    |||||||||| |||||||||||||  |||||||||||||||    
T  19282177 gttgaacttggttcatgaaccaaatgagctgaacttgagct 19282217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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