View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15597_high_1 (Length: 540)
Name: NF15597_high_1
Description: NF15597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15597_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 505; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 12 - 528
Target Start/End: Original strand, 30941819 - 30942335
Alignment:
| Q |
12 |
acatcatcaacaaccatttcagtagcgacacttagtcgctacgaatcacaaaagagaagagattggaacacttttggtcaatacttgaacaacatgagac |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30941819 |
acatcatcaacaaccatttcagtagcgacacttagtcgctacgaatcacaaaagagaagagattggaacacttttggtcaatacttgaacaacatgagac |
30941918 |
T |
|
| Q |
112 |
caccagttccactttcacagtgcaatagcaaccatgttttggatttccttcgttacttagaccaatttggaaaaactaaggttcatgtacaaggttgtat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30941919 |
caccagttccactttcacagtgcaatagcaaccatgttttggatttccttcgttacttagaccaatttggaaaaactaaggttcatgtacaaggttgtat |
30942018 |
T |
|
| Q |
212 |
gttttatggacaaccagaaccacctgcaccgtgtacctgtcctcttagacaagcttggggaagcttagatgctcttattggaagattaagggctgcttat |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30942019 |
gttttatggacaaccagaaccacctgcaccttgtacttgtcctcttagacaagcttggggaagcttagatgctcttattggaagattaagggctgcttat |
30942118 |
T |
|
| Q |
312 |
gaagaaaatggtgggtctcctgatactaatccttttgctagtggttccattcgtgtctaccttagggagattagagagtctcaagctaaggctagaggta |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30942119 |
gaagaaaatggtgggtctcctgatactaatccttttgctagtggttccattcgtgtctaccttagggagattagagagtctcaagctaaggctagaggta |
30942218 |
T |
|
| Q |
412 |
taccttataagaagaaaaagaaaagcacaagtcaaagcaagggaagtgaagaatccagctctagtaatattcaattttcttgaatattcctttgtctatg |
511 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
30942219 |
taccttataagaagaaaaagaaaagcacaagtcaaagcaagggaagtgaagaatccagctccagtaatattcaattttcttgaatattcctttgtctatg |
30942318 |
T |
|
| Q |
512 |
gtaatggttaattttga |
528 |
Q |
| |
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||||||||||||||||| |
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| T |
30942319 |
gtaatggttaattttga |
30942335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 37974937 - 37974981
Alignment:
| Q |
51 |
tacgaatcacaaaagagaagagattggaacacttttggtcaatac |
95 |
Q |
| |
|
||||| |||||||||||| | |||||||||||||||||||||||| |
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| T |
37974937 |
tacgagtcacaaaagagacgtgattggaacacttttggtcaatac |
37974981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 39 - 441
Target Start/End: Original strand, 39556357 - 39556759
Alignment:
| Q |
39 |
acacttagtcgctacgaatcacaaaagagaagagattggaacacttttggtcaatacttgaacaacatgagaccaccagttccactttcacagtgcaata |
138 |
Q |
| |
|
|||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||| | |||||||| ||||||||||| || |||||| |
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| T |
39556357 |
acacttagccgctatgaatctcaaaagagaagagattggaacacttttggtcaatacttaaacaacctaagaccacccgttccactttctcactgcaatt |
39556456 |
T |
|
| Q |
139 |
gcaaccatgttttggatttccttcgttacttagaccaatttggaaaaactaaggttcatgtacaaggttgtatgttttatggacaaccagaaccacctgc |
238 |
Q |
| |
|
||||||||| ||||| || ||| | || ||||| |||||||||||||| || |||||| ||||||||||||||||||||||||| ||||| ||||| || |
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| T |
39556457 |
ccaaccatgtgttggaatttcttaggtatttagatcaatttggaaaaaccaaagttcatttacaaggttgtatgttttatggacagccagagccaccagc |
39556556 |
T |
|
| Q |
239 |
accgtgtacctgtcctcttagacaagcttggggaagcttagatgctcttattggaagattaagggctgcttatgaagaaaatggtgggtctcctgatact |
338 |
Q |
| |
|
||| ||||| ||||| |||||||||||||||||||| | |||||||| ||||| || ||||||||||||||||| ||||| || || |||| || ||| |
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| T |
39556557 |
accttgtacatgtccacttagacaagcttggggaagtcttgatgctctaattgggaggttaagggctgcttatgaggaaaacggcggaactccagagact |
39556656 |
T |
|
| Q |
339 |
aatccttttgctagtggttccattcgtgtctaccttagggagattagagagtctcaagctaaggctagaggtataccttataagaagaaaaagaaaagca |
438 |
Q |
| |
|
|||||||| || || ||| | ||||| || || ||||| ||| |||| |||| ||||||||||||||| ||||| ||||| |||||||||||||| |||| |
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|
| T |
39556657 |
aatcctttcgcgagcggtgctattcgcgtttatcttagagaggttagggagtgtcaagctaaggctaggggtatcccttacaagaagaaaaagaagagca |
39556756 |
T |
|
| Q |
439 |
caa |
441 |
Q |
| |
|
||| |
|
|
| T |
39556757 |
caa |
39556759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 42 - 433
Target Start/End: Complemental strand, 32002397 - 32002006
Alignment:
| Q |
42 |
cttagtcgctacgaatcacaaaagagaagagattggaacacttttggtcaatacttgaacaacatgagaccaccagttccactttcacagtgcaatagca |
141 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| | || ||||||||||| |||| ||| | || ||| | |
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|
| T |
32002397 |
cttagtcgatacgagtcacaaaagagaagagattggaacacttttggacaatacttaaggaatcaaagaccaccagtggcactatcaaattgtaattcaa |
32002298 |
T |
|
| Q |
142 |
accatgttttggatttccttcgttacttagaccaatttggaaaaactaaggttcatgtacaaggttgtatgttttatggacaaccagaaccacctgcacc |
241 |
Q |
| |
|
|||||||| | || ||||| | ||||| || |||||||||||||| || || || ||||||||||| |||||| |||||| | |||||||||| ||| |
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|
| T |
32002297 |
accatgttcttgaattcctaaggtacttggatcaatttggaaaaacaaaagtgcacttacaaggttgtttgtttttcggacaaaccgaaccacctggacc |
32002198 |
T |
|
| Q |
242 |
gtgtacctgtcctcttagacaagcttggggaagcttagatgctcttattggaagattaagggctgcttatgaagaaaatggtgggtctcctgatactaat |
341 |
Q |
| |
|
||||| |||||||| | ||||||||||||||| | ||||| || |||||||||||||| ||||||||||||||||||||||| | ||||| |||||| |
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|
| T |
32002197 |
atgtacttgtcctctaaaacaagcttggggaagtcttgatgcactaattggaagattaagagctgcttatgaagaaaatggtggattacctgaaactaat |
32002098 |
T |
|
| Q |
342 |
ccttttgctagtggttccattcgtgtctaccttagggagattagagagtctcaagctaaggctagaggtataccttataagaagaaaaagaa |
433 |
Q |
| |
|
|||||||||||||||||||| | |||| ||| | ||| | ||||| |||||||||||||||||||| || ||||| |||||||||||||| |
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|
| T |
32002097 |
ccttttgctagtggttccataagaatctatcttcgtgaggtgagagattctcaagctaaggctagaggaattccttacaagaagaaaaagaa |
32002006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 156 - 317
Target Start/End: Original strand, 4863129 - 4863290
Alignment:
| Q |
156 |
ttccttcgttacttagaccaatttggaaaaactaaggttcatgtacaaggttgtatgttttatggacaaccagaaccacctgcaccgtgtacctgtcctc |
255 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||| | || ||||| || |||| |||||||| || || || ||||||||||| ||||| |
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|
| T |
4863129 |
ttccttcgttacttagatcaatttggaaagactaaggttcacttgcacggttgcatctttttcggacaacccgatccgccggcaccgtgtacttgtccgt |
4863228 |
T |
|
| Q |
256 |
ttagacaagcttggggaagcttagatgctcttattggaagattaagggctgcttatgaagaa |
317 |
Q |
| |
|
| |||||||||||||| || | ||||| || || ||| | |||| ||||||||||||||| |
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|
| T |
4863229 |
tgagacaagcttgggggagtcttgatgcactcatcggacggctaagagctgcttatgaagaa |
4863290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 231 - 326
Target Start/End: Complemental strand, 33672141 - 33672046
Alignment:
| Q |
231 |
ccacctgcaccgtgtacctgtcctcttagacaagcttggggaagcttagatgctcttattggaagattaagggctgcttatgaagaaaatggtggg |
326 |
Q |
| |
|
||||||||||| ||| | |||||||| |||||||||||||||| | ||||| | ||||||||| |||| ||||||| |||||||||||||||| |
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|
| T |
33672141 |
ccacctgcaccttgtccttgtcctctacgacaagcttggggaagtcttgatgcattgattggaagactaagagctgcttttgaagaaaatggtggg |
33672046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 326
Target Start/End: Original strand, 15970300 - 15970455
Alignment:
| Q |
171 |
gaccaatttggaaaaactaaggttcatgtacaaggttgtatgttttatggacaaccagaaccacctgcaccgtgtacctgtcctcttagacaagcttggg |
270 |
Q |
| |
|
||||||||||||||||||||||||||| | |||| ||||||||||| ||| | ||||||||| | ||| | ||||||||| | ||||| |||| |
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|
| T |
15970300 |
gaccaatttggaaaaactaaggttcatactctgatttgtcccttttatggacatccaaatccacctgcatcatgtccatgtcctcttcgccaagcgtggg |
15970399 |
T |
|
| Q |
271 |
gaagcttagatgctcttattggaagattaagggctgcttatgaagaaaatggtggg |
326 |
Q |
| |
|
| || | ||||| |||||||| ||| | || ||||||| |||||| ||||||||| |
|
|
| T |
15970400 |
gtagtcttgatgcacttattgggagacttagagctgcttttgaagagaatggtggg |
15970455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 111 - 274
Target Start/End: Original strand, 35814540 - 35814703
Alignment:
| Q |
111 |
ccaccagttccactttcacagtgcaatagcaaccatgttttggatttccttcgttacttagaccaatttggaaaaactaaggttcatgtacaaggttgta |
210 |
Q |
| |
|
|||| ||||||||| ||||| || || |||||||||| | ||||| ||||||||| | || |||||||| || ||||||||||| | |||||||| | |
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|
| T |
35814540 |
ccactagttccactatcacactgtaacttcaaccatgttcttgattttcttcgttaccttgatcaatttggtaagactaaggttcactttcaaggttgca |
35814639 |
T |
|
| Q |
211 |
tgttttatggacaaccagaaccacctgcaccgtgtacctgtcctcttagacaagcttggggaag |
274 |
Q |
| |
|
| || | ||||||||| ||||||||||| ||| | |||||||| | |||||||||||||| |
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|
| T |
35814640 |
tcttctttggacaacctaccccacctgcaccttgtgcttgtcctctcaagcaagcttggggaag |
35814703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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