View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15597_low_4 (Length: 209)
Name: NF15597_low_4
Description: NF15597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15597_low_4 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 8e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 249994 - 249785
Alignment:
| Q |
1 |
aattaaatcaaaagggtctttcatataattattatctttttataaatttaataaatttcttttgagttcattaagttttgcttgagaagatgagggtttc |
100 |
Q |
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| T |
249994 |
aattaaatcaaaagggtctttcatataattattatctttttataaatttaataaatttcttttgagttcatcaagttttgcttgagaagatgagggtttc |
249895 |
T |
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| Q |
101 |
tagtctaaagagaaaagagatgaattttattgtttaattttcttc-nnnnnnnncacagaaacatacaaacaaaaagatcagtatgatatccttcatgga |
199 |
Q |
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| T |
249894 |
tagtctaaagagaaaagagatgaattttattgtttaattttcttcaaaaaaacacacagaaacatacaaacaaaaagatcagtatgatatccttcatgga |
249795 |
T |
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| Q |
200 |
tcatgtttat |
209 |
Q |
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|||||||||| |
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| T |
249794 |
tcatgtttat |
249785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 250128 - 249994
Alignment:
| Q |
1 |
aattaaatcaaaagggtctttcatataattattatctttttataaatttaataaatttcttttgagttcattaagttttgcttgagaagatgagggtttc |
100 |
Q |
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|||||||||||||||||||||||| || ||| | |||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||| |||| |
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| T |
250128 |
aattaaatcaaaagggtctttcatctagttaat---tttttataaatttaattaatttcttttgagttcatcaagttttgtttgagaagatgaggatttc |
250032 |
T |
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| Q |
101 |
tagt-ctaaagagaaaagagatgaattttattgtttaa |
137 |
Q |
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| T |
250031 |
tggtcctaaagagaaaagagatgaattttgttgtttaa |
249994 |
T |
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