View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15598_high_10 (Length: 435)
Name: NF15598_high_10
Description: NF15598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15598_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 5174731 - 5175087
Alignment:
| Q |
1 |
cagtctcaattccaatattctctggtttctcaga-tctttgtttcttatgttaaaaaacacaaatcataa-tctgcatgaatccggcagagtag---tga |
95 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
5174731 |
cagtctcaattccaatattctctggtttctcagaatctttgtttcttatgttaaaaaacacaaatcataaatctgcatgaatccggcagagtagatttga |
5174830 |
T |
|
| Q |
96 |
tggtaggagaaacatagccataggagttaaaaatatatacttaaatccctccccttgtcttactctaaacattaccttaggcaacacagtagtaatcatt |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5174831 |
tggtaggagaaacatagccataggagttaaaaatatatacttaaatccctccccttgtcttactctaaacattaccttaggcaacacagtagtaatcatt |
5174930 |
T |
|
| Q |
196 |
attattgacaataaaaatggcaataatgagttaaaaacaaaaagataatagatgtagtcactagcagttagtaaatttcaatagtccaagctaagcaaaa |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5174931 |
attattgacaataaaaatggcaataatgagttaaaaacaaaaagataatagatgtagtcactagcagttagtaaatttcaatagtcc-----aagcaaaa |
5175025 |
T |
|
| Q |
296 |
aatgaccttagacagattaagat---ttccaatttggtttgtccaaatgaaactcaattata |
354 |
Q |
| |
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||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
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|
| T |
5175026 |
aatgaccttagacagattaagattaattccaattgggtttgtccaaatgaaactcaattata |
5175087 |
T |
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