View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15598_high_13 (Length: 411)
Name: NF15598_high_13
Description: NF15598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15598_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 4e-79; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 137 - 286
Target Start/End: Original strand, 28691952 - 28692101
Alignment:
| Q |
137 |
ttataaaatcaacattgatgttatcttaattatgtttttgttcttagtaataatataacattttggaatgacgcacctgtgtccatgcttcctgtcctca |
236 |
Q |
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| T |
28691952 |
ttataaaatcaacattgatgttatcttaattatgtttttgttcttagtaataatataacattttggaatgacgcacctgtgtccatgcttcctgtcctca |
28692051 |
T |
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| Q |
237 |
acaagcttattgctgctggtattcgtatatgggtttacaggtaaataatt |
286 |
Q |
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| T |
28692052 |
acaagcttattgctgctggtattcgtatatgggtttacaggtaaataatt |
28692101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 28691801 - 28691889
Alignment:
| Q |
1 |
ctgcagcatacctaaataggccagaggttcaaaaggcacttcatgctaatgtcacaaaaatttcatatccatggagtcattgcaggtat |
89 |
Q |
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| T |
28691801 |
ctgcagcatacctaaataggccagaggttcaaaaggcacttcatgctaatgtcacaaaaatttcatatccatggagtcactgcaggtat |
28691889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 333 - 371
Target Start/End: Original strand, 28692187 - 28692225
Alignment:
| Q |
333 |
ttttttataagttggaagttaattgaaaagtgatattat |
371 |
Q |
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| T |
28692187 |
ttttttataagttggaagttaattgaaaagtgatattat |
28692225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 110 - 145
Target Start/End: Original strand, 28691893 - 28691928
Alignment:
| Q |
110 |
attcaatttttgtgaacatattacatattataaaat |
145 |
Q |
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| T |
28691893 |
attcaatttttgtgaacatattacatattagaaaat |
28691928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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