View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15598_high_16 (Length: 344)
Name: NF15598_high_16
Description: NF15598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15598_high_16 |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0128 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 14 - 344
Target Start/End: Original strand, 35204962 - 35205298
Alignment:
| Q |
14 |
atactcaaatggtcttgcacaaagtgcacttaaattacttatgaagggtgtgagcttttcacttgccttttnnnnnnncaggagtagaattgtaaaacaa |
113 |
Q |
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| T |
35204962 |
atactcaaatggtcttgcaaaaagtgtacttaaattacttatgaagggtgtgagcttttcacttgccttttaaaaaaacaggagtagaattgcaaaacaa |
35205061 |
T |
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| Q |
114 |
cagttactaagcaatgataagttgccactaatgtttccnnnnnnnn--tctaagcagacctcaagagcgcagttgattaatgtcttaactagaataaata |
211 |
Q |
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| T |
35205062 |
cagttactaagcaatgataagttgccactaatgtttccaaaaaaaaaatctaagtagacctcaagagcgccgttaattaatgtcttaactagaataaata |
35205161 |
T |
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| Q |
212 |
ctacaatcaaagagaatttagctccaataagcctctttcaacataccatcttgacatgtatcatcaataat----attggatttacacagagtttcggtt |
307 |
Q |
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| T |
35205162 |
ctacaatcaaagagaatttagctccaataagcctctttcaacataccatcttgacatgtattatcaataatattaattggatttactcagagtttcggtt |
35205261 |
T |
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| Q |
308 |
gtgggtctataactctataaaggacttatgttggaca |
344 |
Q |
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| T |
35205262 |
gtgggtctataactctataaaggacttatgttggaca |
35205298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 221 - 279
Target Start/End: Original strand, 22472301 - 22472359
Alignment:
| Q |
221 |
aagagaatttagctccaataagcctctttcaacataccatcttgacatgtatcatcaat |
279 |
Q |
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| T |
22472301 |
aagagaatttagctacaataagcctctttcatccaaccatcttgacatgtatcaccaat |
22472359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 291
Target Start/End: Complemental strand, 5649 - 5545
Alignment:
| Q |
187 |
attaatgtcttaactagaataaatactacaatcaaagagaatttagctccaataagcctctttcaacataccatcttgacatgtatcatcaataatattg |
286 |
Q |
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| T |
5649 |
attaatgtcttaactagaacagatactatggctgaagtgaatgtagctccaataagcctctttcatctcaccatgatgacatgtaccatcaataacactg |
5550 |
T |
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| Q |
287 |
gattt |
291 |
Q |
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||||| |
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| T |
5549 |
gattt |
5545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 151
Target Start/End: Complemental strand, 2907328 - 2907267
Alignment:
| Q |
92 |
caggagtagaattgtaaaacaaca--gttactaagcaatgataagttgccactaatgtttcc |
151 |
Q |
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| T |
2907328 |
caggagtagaattataaaacaacacagttattaagctataataagttgctactaatgtttcc |
2907267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 288
Target Start/End: Original strand, 31442049 - 31442115
Alignment:
| Q |
222 |
agagaatttagctccaataagcctctttcaacataccatcttgacatgtatcatcaataatattgga |
288 |
Q |
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| T |
31442049 |
agagaatgtagctccaataagcctctttcattctaccatcctggcatgcaccatcaataatgttgga |
31442115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 282
Target Start/End: Complemental strand, 42300455 - 42300394
Alignment:
| Q |
221 |
aagagaatttagctccaataagcctctttcaacataccatcttgacatgtatcatcaataat |
282 |
Q |
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|||||||| || ||||||||||||||||||| | |||||| |||||||| |||||||||| |
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| T |
42300455 |
aagagaatgtaactccaataagcctctttcatctcaccatcaagacatgtaccatcaataat |
42300394 |
T |
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