View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15598_high_24 (Length: 251)

Name: NF15598_high_24
Description: NF15598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15598_high_24
NF15598_high_24
[»] chr8 (2 HSPs)
chr8 (1-223)||(2792567-2792777)
chr8 (77-127)||(33819687-33819737)
[»] scaffold0118 (1 HSPs)
scaffold0118 (76-144)||(41642-41710)
[»] chr1 (3 HSPs)
chr1 (77-144)||(51814494-51814561)
chr1 (76-134)||(14787355-14787413)
chr1 (77-133)||(34460929-34460985)
[»] scaffold0161 (1 HSPs)
scaffold0161 (1-69)||(26802-26870)
[»] chr4 (2 HSPs)
chr4 (76-144)||(46545710-46545778)
chr4 (76-144)||(47044716-47044784)
[»] chr3 (4 HSPs)
chr3 (9-60)||(30694341-30694392)
chr3 (77-133)||(5499427-5499483)
chr3 (77-144)||(9557320-9557387)
chr3 (9-59)||(45730303-45730353)
[»] chr2 (8 HSPs)
chr2 (77-144)||(45672387-45672454)
chr2 (76-134)||(4438998-4439056)
chr2 (77-134)||(11738063-11738120)
chr2 (77-144)||(34041597-34041664)
chr2 (77-144)||(35916086-35916153)
chr2 (77-144)||(45672238-45672305)
chr2 (76-130)||(5147702-5147756)
chr2 (1-30)||(15253337-15253366)
[»] chr5 (1 HSPs)
chr5 (1-30)||(5585834-5585863)


Alignment Details
Target: chr8 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 2792567 - 2792777
Alignment:
Q  1 tttaatacttatatatgaaactctacaaaaccagcgcatcacacggcttagagtctagttataataaaagcttgctaacccacttgagttggcctaatgg 100  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2792567 tttaatacttatatatgaaactctacaaaaccagcgcataacacgggttagagtctagttataataaaagcttgctaatccacttgagttggcctaatgg 2792666  T
Q  101 ttttgacttgagatctgagagtatgttcctcctctagatctcagtccagatctcaggttcggttttctctggtgccaatttaaaagaaattgttatgtgg 200  Q
    |||||||||||||||||||||||||||||||||||            ||||||||||||||||| |||| |||||||||||||||||||||||||||| |    
T  2792667 ttttgacttgagatctgagagtatgttcctcctct------------agatctcaggttcggttctctccggtgccaatttaaaagaaattgttatgtcg 2792754  T
Q  201 taatagaaagaaccgccaagaat 223  Q
    |||||||||||||||||||||||    
T  2792755 taatagaaagaaccgccaagaat 2792777  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 127
Target Start/End: Original strand, 33819687 - 33819737
Alignment:
Q  77 aacccacttgagttggcctaatggttttgacttgagatctgagagtatgtt 127  Q
    ||||||||| ||||| ||||||||| |||||||| ||||||||||| ||||    
T  33819687 aacccacttaagttgacctaatggtattgacttgggatctgagagtgtgtt 33819737  T

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Target: scaffold0118 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 41710 - 41642
Alignment:
Q  76 taacccacttgagttggcctaatggttttgacttgagatctgagagtatgttcctcctctagatctcag 144  Q
    ||||||||||| ||||||||| |||| ||| ||||||||||||||||||| |||||||| || ||||||    
T  41710 taacccacttgggttggcctagtggtattggcttgagatctgagagtatgctcctcctcgaggtctcag 41642  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 77 - 144
Target Start/End: Original strand, 51814494 - 51814561
Alignment:
Q  77 aacccacttgagttggcctaatggttttgacttgagatctgagagtatgttcctcctctagatctcag 144  Q
    |||||||||| |||||||| ||||| |||||||||||||||||||| || |||||||| || ||||||    
T  51814494 aacccacttgggttggcctgatggtattgacttgagatctgagagtgtgctcctcctcaaggtctcag 51814561  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 134
Target Start/End: Complemental strand, 14787413 - 14787355
Alignment:
Q  76 taacccacttgagttggcctaatggttttgacttgagatctgagagtatgttcctcctc 134  Q
    |||| ||||||||||| |||| |||| ||||||||||| |||||||| |||| ||||||    
T  14787413 taactcacttgagttgacctagtggtattgacttgagacctgagagtgtgtttctcctc 14787355  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 34460985 - 34460929
Alignment:
Q  77 aacccacttgagttggcctaatggttttgacttgagatctgagagtatgttcctcct 133  Q
    ||||||||||||||||| || |||| ||||||||||| || | ||| ||||||||||    
T  34460985 aacccacttgagttggcttagtggtattgacttgagacctaaaagtgtgttcctcct 34460929  T

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Target: scaffold0161 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 26870 - 26802
Alignment:
Q  1 tttaatacttatatatgaaactctacaaaaccagcgcatcacacggcttagagtctagttataataaaa 69  Q
    |||||||||||||||||||||||| ||||| | | | |||||| || |||||||||||||||| |||||    
T  26870 tttaatacttatatatgaaactctgcaaaatccgtgtatcacatggattagagtctagttatattaaaa 26802  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 46545710 - 46545778
Alignment:
Q  76 taacccacttgagttggcctaatggttttgacttgagatctgagagtatgttcctcctctagatctcag 144  Q
    ||||||||||| ||||||||| |||| ||| ||||||| |||||||| || |||||||| |||||||||    
T  46545710 taacccacttgggttggcctagtggtattggcttgagacctgagagtgtgctcctcctcaagatctcag 46545778  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 47044716 - 47044784
Alignment:
Q  76 taacccacttgagttggcctaatggttttgacttgagatctgagagtatgttcctcctctagatctcag 144  Q
    |||||||||||  |||||||  |||| |||||||| ||||||||||| || |||||||| || ||||||    
T  47044716 taacccacttggattggcctggtggtattgacttgggatctgagagtttgctcctcctcgaggtctcag 47044784  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 30694392 - 30694341
Alignment:
Q  9 ttatatatgaaactctacaaaaccagcgcatcacacggcttagagtctagtt 60  Q
    |||||||||||||||||||||||| | ||||| ||||| |||||||||||||    
T  30694392 ttatatatgaaactctacaaaacccgtgcatcgcacgggttagagtctagtt 30694341  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 5499483 - 5499427
Alignment:
Q  77 aacccacttgagttggcctaatggttttgacttgagatctgagagtatgttcctcct 133  Q
    |||||||||| ||||||||  |||| |||||||||||||||||||| || |||||||    
T  5499483 aacccacttgggttggcctggtggtattgacttgagatctgagagtgtgctcctcct 5499427  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 144
Target Start/End: Original strand, 9557320 - 9557387
Alignment:
Q  77 aacccacttgagttggcctaatggttttgacttgagatctgagagtatgttcctcctctagatctcag 144  Q
    |||||||||||| |||||| || || ||| |||| ||||||||||| || |||||||| |||||||||    
T  9557320 aacccacttgagctggcctgatagtattggcttgggatctgagagtgtgctcctcctcgagatctcag 9557387  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 45730353 - 45730303
Alignment:
Q  9 ttatatatgaaactctacaaaaccagcgcatcacacggcttagagtctagt 59  Q
    |||||||||||||||||||||||| |||||||  |||| ||||||| ||||    
T  45730353 ttatatatgaaactctacaaaacccgcgcatcgaacgggttagagtatagt 45730303  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 144
Target Start/End: Complemental strand, 45672454 - 45672387
Alignment:
Q  77 aacccacttgagttggcctaatggttttgacttgagatctgagagtatgttcctcctctagatctcag 144  Q
    |||||||||| ||||||||  |||||||| ||||||| ||  ||||||||||||||||||| ||||||    
T  45672454 aacccacttgggttggccttgtggttttgccttgagaccttggagtatgttcctcctctaggtctcag 45672387  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 134
Target Start/End: Complemental strand, 4439056 - 4438998
Alignment:
Q  76 taacccacttgagttggcctaatggttttgacttgagatctgagagtatgttcctcctc 134  Q
    ||||||||||| |||||||||||||| || ||||| ||||||||||| || ||||||||    
T  4439056 taacccacttgggttggcctaatggtattaacttgggatctgagagtgtgctcctcctc 4438998  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 11738120 - 11738063
Alignment:
Q  77 aacccacttgagttggcctaatggttttgacttgagatctgagagtatgttcctcctc 134  Q
    ||||||||||||||||  || |||| |||||| ||||||||||||| |||||||||||    
T  11738120 aacccacttgagttggattagtggtattgactagagatctgagagtgtgttcctcctc 11738063  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 144
Target Start/End: Complemental strand, 34041664 - 34041597
Alignment:
Q  77 aacccacttgagttggcctaatggttttgacttgagatctgagagtatgttcctcctctagatctcag 144  Q
    |||||||||| ||||||||| |||| |||||||  ||||||||||| || |||||||| || ||||||    
T  34041664 aacccacttgggttggcctagtggtattgacttaggatctgagagtgtgctcctcctcaaggtctcag 34041597  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 144
Target Start/End: Original strand, 35916086 - 35916153
Alignment:
Q  77 aacccacttgagttggcctaatggttttgacttgagatctgagagtatgttcctcctctagatctcag 144  Q
    |||||||||| ||||| ||  |||| |||||||||||| | ||||| ||||||||||| |||||||||    
T  35916086 aacccacttgggttggtctggtggtattgacttgagatttaagagtgtgttcctcctcaagatctcag 35916153  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 144
Target Start/End: Complemental strand, 45672305 - 45672238
Alignment:
Q  77 aacccacttgagttggcctaatggttttgacttgagatctgagagtatgttcctcctctagatctcag 144  Q
    ||||||||||  |||||||  |||||||| ||||||| ||  ||||||||||||||||||| ||||||    
T  45672305 aacccacttggattggccttgtggttttgccttgagaccttggagtatgttcctcctctaggtctcag 45672238  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 130
Target Start/End: Complemental strand, 5147756 - 5147702
Alignment:
Q  76 taacccacttgagttggcctaatggttttgacttgagatctgagagtatgttcct 130  Q
    ||||||||||| ||||| ||| |||| ||||||||||||||| ||||||| ||||    
T  5147756 taacccacttgggttggtctagtggtattgacttgagatctgggagtatgctcct 5147702  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 15253366 - 15253337
Alignment:
Q  1 tttaatacttatatatgaaactctacaaaa 30  Q
    ||||||||||||||||||||||||||||||    
T  15253366 tttaatacttatatatgaaactctacaaaa 15253337  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 5585863 - 5585834
Alignment:
Q  1 tttaatacttatatatgaaactctacaaaa 30  Q
    ||||||||||||||||||||||||||||||    
T  5585863 tttaatacttatatatgaaactctacaaaa 5585834  T

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