View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15598_high_25 (Length: 240)
Name: NF15598_high_25
Description: NF15598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15598_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 35 - 222
Target Start/End: Complemental strand, 24399741 - 24399554
Alignment:
| Q |
35 |
gccaaaactaaaacgtgttgcaactgagaccacattaaaatgtgaatgtcactgttatcgtgactgcaatttaaaacctgctcaaaatctaaaattcgcg |
134 |
Q |
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| T |
24399741 |
gccaaaactaaaacatgttgcaactgaggccacattaaaacgtgaatgtcactgttatcgtgactgcaatttaaaacctgctcaaaatctaaaagtcgcg |
24399642 |
T |
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| Q |
135 |
atgaaaaatatttcggtaatgttgacctgtaaagaagattttgtcccatttttgccgtaataattggtcggattcctgtggtccccct |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
24399641 |
atgaaaaatatttcggtaatgttgacctgtaaagaagattttgtcccatttttgacgtaataattggtcggattcctgtggtccccct |
24399554 |
T |
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