View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15598_high_3 (Length: 546)
Name: NF15598_high_3
Description: NF15598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15598_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 218 - 533
Target Start/End: Complemental strand, 27062975 - 27062662
Alignment:
| Q |
218 |
atactaataataatatgnnnnnnntaacataattcaatgtaatcaaacgtgttgtgtcagtgacatgtgtcggatattagcacatgaaatgtttatgcta |
317 |
Q |
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| T |
27062975 |
atactaataataatatgaaaaaaataacataattcaatgtaatcaaacgtgttgtgtcagtgacatgtgtcagatattagcacatga--tgtttatgcta |
27062878 |
T |
|
| Q |
318 |
caaaggtaatgaattcattctttattaaatnnnnnnnnnnnntaatttattgcatgattaaagactcaccggaactgctaaaccactggcaaaaatggag |
417 |
Q |
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| T |
27062877 |
caaaggtaatgaattcattctttattaaataaaaaacaaaaataatttattgcatgattaaagactcaccggaactgctaaaccaccggcaaaaatggag |
27062778 |
T |
|
| Q |
418 |
ttagactcgccgtctccggcgccggaaaatgttgtggaatttgaattgtcgtcatcttctgttcgttcatgttcagaaccggaggtggtgctgtttttct |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
27062777 |
ttagactcgccgtctccggcgccggaaaatgttgtggaatttgaattgtcgtcatcttcggttcgttcatgttcagaaccggaggtggtgctgtttttct |
27062678 |
T |
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| Q |
518 |
catgttcttcctcttc |
533 |
Q |
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|||||||||||||||| |
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| T |
27062677 |
catgttcttcctcttc |
27062662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 243 - 533
Target Start/End: Complemental strand, 27084055 - 27083767
Alignment:
| Q |
243 |
aacataattcaatgtaatcaaacgtgttgtgtcagtgacatgtgtcggatattagcacatgaaatgtttatgctacaaaggtaatgaattcattctttat |
342 |
Q |
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| T |
27084055 |
aacataattcaatgtaatcaaacgtgttgtgtcagtgacatgtgtcagatattagcacatga--tgtttatgctacaaaggtaatgaattcattctttat |
27083958 |
T |
|
| Q |
343 |
taaatnnnnnnnnnnnntaatttattgcatgattaaagactcaccggaactgctaaaccactggcaaaaatggagttagactcgccgtctccggcgccgg |
442 |
Q |
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| T |
27083957 |
taaataaaaaacaaaaataatttattgcatgattaaagactcaccggaactgctaaaccaccggcaaaaatggagttagactcgccgtctccggcgccgg |
27083858 |
T |
|
| Q |
443 |
aaaatgttgtggaatttgaattgtcgtcatcttctgttcgttcatgttcagaaccggaggtggtgctgtttttctcatgttcttcctcttc |
533 |
Q |
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| T |
27083857 |
aaaatgttgtggaatttgaattgtcgtcatcttcggttcgttcatgttcagaaccggaggtggtgctgtttttctcatgttcttcctcttc |
27083767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 19 - 179
Target Start/End: Complemental strand, 27063169 - 27063009
Alignment:
| Q |
19 |
ggttgggcccggtctaggttccggttcggaccgggcctgaactggatacaatagagacagttctggtatagaatcgtccacaaagtgagacacccattcc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27063169 |
ggttgggcccggtctaggttccggttcggaccgggcctgaactggatacaatagagacagttctggtatagaatcgtccacaaagtgagacacccattcc |
27063070 |
T |
|
| Q |
119 |
aaatccgcaacatcatctgcctgacaaataagaaaaccaaaacgagttgttagctatgaag |
179 |
Q |
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| T |
27063069 |
aaatccgcaacatcatctgcctgagaaataagaaaaccaaaacgagttgttagctatgaag |
27063009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 19 - 179
Target Start/End: Complemental strand, 27084275 - 27084115
Alignment:
| Q |
19 |
ggttgggcccggtctaggttccggttcggaccgggcctgaactggatacaatagagacagttctggtatagaatcgtccacaaagtgagacacccattcc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27084275 |
ggttgggcccggtctaggttccggttcggaccgggcctgaactggatacaatagagacagttctggtatagaatcgtccacaaagtgagacacccattcc |
27084176 |
T |
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| Q |
119 |
aaatccgcaacatcatctgcctgacaaataagaaaaccaaaacgagttgttagctatgaag |
179 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27084175 |
aaatccgcaacatcatctgcctgagaaataagaaaaccaaaacgagttgttagctatgaag |
27084115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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