View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15598_high_32 (Length: 202)
Name: NF15598_high_32
Description: NF15598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15598_high_32 |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 34008122 - 34008297
Alignment:
| Q |
20 |
gatggtttccaaatctggaccaccaatcagtgtagttgaaattgccaaaagagggccaatctttgtttgccatagtaactgtaaacattgaagtggttat |
119 |
Q |
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| T |
34008122 |
gatggtttccaaatctggaccaccaatcagtgtagttgaaattgccaaaagagggccaatctttgtttgccatagtaactgtaaacattgaagtggttat |
34008221 |
T |
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| Q |
120 |
tattactag---taaggtgagaacatgaacaatgttggtggtggaggccatattgttttatatgattcttctcact |
192 |
Q |
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| T |
34008222 |
tataactagtaataaggtgaggacatgaacaatgtttgtggtgaaggccatattgttttatatgattcttgtcact |
34008297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 20 - 167
Target Start/End: Original strand, 34000232 - 34000379
Alignment:
| Q |
20 |
gatggtttccaaatctggaccaccaatcagtgtagttgaaattgccaaaagagggccaatctttgtttgccatagtaactgtaaacattgaagtggttat |
119 |
Q |
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| T |
34000232 |
gatggtttccaaatctggaccaccaatcagtatagttgaaattgccaaaagagggccagtctttgtttgcaacagtaactgtaaacattgaagcggttat |
34000331 |
T |
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| Q |
120 |
tattactagtaaggtgagaacatgaacaatgttggtggtggaggccat |
167 |
Q |
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| T |
34000332 |
tattactagtaaggtgaggacatgaacaatgttggtggtggaggccat |
34000379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 20 - 186
Target Start/End: Original strand, 33995539 - 33995708
Alignment:
| Q |
20 |
gatggtttccaaatctggaccaccaatcagtgtagttgaaattgccaaaagagggccaatctttgtttgccatagtaactgtaaacattgaagtggttat |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||| | |||| |
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| T |
33995539 |
gatggtttccaaatctggaccaccaatcagtgtagttgaaattgccaaaggagggccagtctttgtttgccacagtaactgtaaacattgaagcgcttat |
33995638 |
T |
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| Q |
120 |
tattactag---taaggtgagaacatgaacaatgttggtggtggaggccatattgttttatatgattctt |
186 |
Q |
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| T |
33995639 |
tataactagtaataaggtgaggacatgaacaatgtttgtggtgaaggccatattgtcttagatgattctt |
33995708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 34003657 - 34003792
Alignment:
| Q |
20 |
gatggtttccaaatctggaccaccaatcagtgtagttgaaattgccaaaagagggccaatctttgtttgccatagtaactgtaaacattgaagtggttat |
119 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| | |
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| T |
34003657 |
gatgatttccaaatctggaccaccaatcagtgtagttaaaattgccaaaagagggccagtctttgtttgccatagtaaccgtaaacattgaagtgg---t |
34003753 |
T |
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| Q |
120 |
tattactagtaaggtgagaacatgaacaatgttggtggt |
158 |
Q |
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| T |
34003754 |
tataactagaaaggtaaagacatgaacaaagttggtggt |
34003792 |
T |
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