View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15598_high_4 (Length: 543)

Name: NF15598_high_4
Description: NF15598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15598_high_4
NF15598_high_4
[»] chr3 (11 HSPs)
chr3 (10-543)||(1425795-1426328)
chr3 (25-543)||(1447886-1448405)
chr3 (23-540)||(1470364-1470891)
chr3 (166-233)||(46145786-46145853)
chr3 (179-236)||(19757714-19757771)
chr3 (179-229)||(19736812-19736862)
chr3 (170-236)||(51448288-51448354)
chr3 (170-236)||(52138465-52138531)
chr3 (169-214)||(29817141-29817186)
chr3 (169-214)||(48221420-48221465)
chr3 (122-214)||(32490325-32490417)
[»] chr8 (7 HSPs)
chr8 (125-237)||(41444882-41444994)
chr8 (125-234)||(25985134-25985241)
chr8 (179-236)||(15215849-15215906)
chr8 (170-236)||(12492421-12492487)
chr8 (170-236)||(36565820-36565886)
chr8 (166-199)||(35094837-35094870)
chr8 (168-208)||(3285124-3285164)
[»] chr5 (8 HSPs)
chr5 (125-214)||(6368526-6368615)
chr5 (169-236)||(2076053-2076120)
chr5 (169-236)||(20318627-20318694)
chr5 (170-236)||(3301486-3301552)
chr5 (170-236)||(3394347-3394413)
chr5 (170-236)||(28977436-28977502)
chr5 (167-228)||(37124204-37124265)
chr5 (168-240)||(3096817-3096889)
[»] chr4 (9 HSPs)
chr4 (176-236)||(10775998-10776058)
chr4 (170-236)||(435866-435932)
chr4 (170-236)||(23906880-23906946)
chr4 (177-227)||(30807242-30807292)
chr4 (170-236)||(33226846-33226912)
chr4 (170-236)||(39708094-39708160)
chr4 (162-200)||(43562329-43562367)
chr4 (170-236)||(48174672-48174738)
chr4 (175-237)||(17667907-17667966)
[»] chr1 (8 HSPs)
chr1 (125-241)||(28528173-28528289)
chr1 (155-229)||(6640748-6640822)
chr1 (170-236)||(8671557-8671623)
chr1 (170-236)||(51601695-51601761)
chr1 (125-206)||(16273438-16273519)
chr1 (166-214)||(40419314-40419362)
chr1 (170-234)||(43240962-43241026)
chr1 (394-478)||(52442825-52442909)
[»] chr2 (5 HSPs)
chr2 (170-236)||(11992685-11992751)
chr2 (116-214)||(26433786-26433884)
chr2 (170-236)||(2610165-2610231)
chr2 (170-236)||(8180417-8180483)
chr2 (168-201)||(28317381-28317414)
[»] scaffold0113 (1 HSPs)
scaffold0113 (181-236)||(12177-12232)
[»] chr7 (4 HSPs)
chr7 (170-236)||(32630244-32630310)
chr7 (170-236)||(46356430-46356496)
chr7 (125-214)||(32484079-32484168)
chr7 (166-203)||(33737943-33737980)
[»] chr6 (2 HSPs)
chr6 (170-236)||(10100436-10100502)
chr6 (179-236)||(20428215-20428272)
[»] scaffold0570 (1 HSPs)
scaffold0570 (179-236)||(2849-2906)
[»] scaffold0171 (1 HSPs)
scaffold0171 (179-236)||(5838-5895)


Alignment Details
Target: chr3 (Bit Score: 457; Significance: 0; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 10 - 543
Target Start/End: Complemental strand, 1426328 - 1425795
Alignment:
Q  10 tgtatactttttgcagaagatattatcctacttggagcgtagagagcagaattacttgtgaggttagatactttgagaaaatcttaaaaacatttggctt 109  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1426328 tgtatactttttgcagaagatattatcctacttggagagtagagagaagaattacttgtgaggttagatactttgagaaaatcttaaaaacatttggctt 1426229  T
Q  110 tcacataagtagaaaaagacaaagtatatgcaataaaattttaacaagagatgaaacatttctaacttagaggtgaaagttggagatcatattataccaa 209  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1426228 tcacatatgtagaaaaagacaaagtatatgaaataaaattttaacaagaggtgaaacatttctaacttaaaggtgaaagttggagatcatattataccaa 1426129  T
Q  210 aagttgtatggtttaaatattttgggtttatgaagaaaaacaacaaataaatagaaggagatgtaaatcatcaaacccatggatgggtggttgaactaga 309  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1426128 aagttgtatggtttaaatattttgggtttataaagaaaaacaacaaataaatagaaggagatgtaaatcatcaaacccatggatgggtggttgaactaga 1426029  T
Q  310 cgaatgcctcgtgtgttttgtgtgattcgaaagtaccgttcatgttgaaagaannnnnnnatcgaacatcaataaagctgatgatgtttggtggtaaaca 409  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||       ||||||||||||||||||||||||||||||||||||||||    
T  1426028 cgaatgcctcgtgtgttttgtgtgattcgaaagtaccgttcacgttgaaagaatttttttatcgaacatcaataaagctgatgatgtttggtggtaaaca 1425929  T
Q  410 atcagcacaaacataaattaagcatagtagatatgaggaagttgtgttcgatttatagtaagattagacgggatagaattagagctaacatgaacataaa 509  Q
    | ||||| ||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  1425928 accagcaaaaacataaattaagcatagtagatatgaggacgttgtgttggatgtatagtaagattagacggaatagaattagagctaacatgaacataaa 1425829  T
Q  510 tttatgggacaataatacttgggtttacttggtg 543  Q
    ||||||||||||||||||||||||||||||||||    
T  1425828 tttatgggacaataatacttgggtttacttggtg 1425795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 25 - 543
Target Start/End: Complemental strand, 1448405 - 1447886
Alignment:
Q  25 gaagatattatcctacttggagcgtagagagcagaattacttgtgaggttagatactttgagaaaatcttaaaaa-catttggctttcacataagtagaa 123  Q
    ||||||||  |||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||| |||||||    
T  1448405 gaagatatagtcctacttggagagtagagagaagaattacttttgaggttagatactttgagaaaatcttaaaaaacgtttggctttcacatgagtagaa 1448306  T
Q  124 -aaagacaaagtatatgcaataaaattttaacaagagatgaaacatttctaacttagaggtgaaagttggagatcatattataccaaaagttgtatggtt 222  Q
     ||||||||| |||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||| ||| ||||||||| ||||||    
T  1448305 gaaagacaaaatatatgaaataaaattttaacaagaggtgaaacatttctagcttagaggtaaaagttggagatcatatcatatcaaaagttgcatggtt 1448206  T
Q  223 taaatattttgggtttatgaagaaaaacaacaaataaatagaaggagatgtaaatcatcaaacccatggatgggtggttgaactagacgaatgcctcgtg 322  Q
    ||||||||||||||||||   ||||||||||||| ||||| ||||||||||||||||||||| || || ||||||||||||| | || ||||||||||||    
T  1448205 taaatattttgggtttatagtgaaaaacaacaaagaaataaaaggagatgtaaatcatcaaa-ccttgcatgggtggttgaaatggaggaatgcctcgtg 1448107  T
Q  323 tgttttgtgtgattcgaaagtaccgttca--tgttgaaagaannnnnnnatcgaacatcaataaagctgatgatgtttggtggtaaacaatcagcacaaa 420  Q
    |||||| |||||| |||||||||   |||  |||||||| ||       |||||||||||||||| |||||||||||||||||||||||| || ||||||    
T  1448106 tgttttatgtgatgcgaaagtactactcacgtgttgaaataa-atttttatcgaacatcaataaaactgatgatgtttggtggtaaacaaccaacacaaa 1448008  T
Q  421 cataaattaagcatagtagatatgaggaagttgtgttcgatttatagtaagattagacgggatagaattagagctaacatgaacataaatttatgggaca 520  Q
    ||||||||||||||| ||||||||| ||||||||||| ||| | |||||||| |||| |||||| ||||||||||||| |||||||||||||||||||||    
T  1448007 cataaattaagcataatagatatgaagaagttgtgttggatgtgtagtaagactagaggggataaaattagagctaac-tgaacataaatttatgggaca 1447909  T
Q  521 ataatacttgggtttacttggtg 543  Q
    ||| ||||| |||||||||||||    
T  1447908 atactacttaggtttacttggtg 1447886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 23 - 540
Target Start/End: Complemental strand, 1470891 - 1470364
Alignment:
Q  23 cagaagatattatcctacttggagcgtagagagcagaattacttgtgaggttagatactttgagaaaat-cttaaaaacatttggctttcacataagtag 121  Q
    ||||||||||  |||||||||||| ||   ||| |||||| || ||||||||||||||||| ||||||| || |||||| ||||| ||||  || |||||    
T  1470891 cagaagatatagtcctacttggagagtgtggagaagaattcctagtgaggttagatacttttagaaaattctaaaaaacgtttgggtttcgtatgagtag 1470792  T
Q  122 aa-aaagacaaagtatatgcaataaaattttaacaagagatgaaacatttctaacttagaggtgaaagttggagatcatattataccaaaagttgtatgg 220  Q
    || ||||||| |||||||| |||||||||||| |||||| |||| ||||| |  ||||||||||||||||||||||||||| ||||||||||||| ||||    
T  1470791 aataaagacagagtatatgaaataaaattttagcaagaggtgaatcatttattgcttagaggtgaaagttggagatcatatcataccaaaagttgcatgg 1470692  T
Q  221 tttaaatattttgggtttatgaagaaaaacaacaaataaatagaaggagatgtaaatcatcaaacccatggatgggtggttgaactagacgaatgcctcg 320  Q
    |||||||||||| |||||||   |||||||||||||| |||||||||| |||||||||||||||||| | |||||||||| ||| | || ||||| || |    
T  1470691 tttaaatatttttggtttatagtgaaaaacaacaaatgaatagaaggaaatgtaaatcatcaaaccc-tagatgggtggtagaaatggaggaatgtcttg 1470593  T
Q  321 tgtgttttgtgtgattcgaaagtaccgttcatgttgaaagaa----------nnnnnnnatcgaacatcaataaagctgatgatgtttggtggtaaacaa 410  Q
    ||| |||| |||||| | |||| |||  |||  |||||||||                 ||||||||| | |||| |  | ||||||||||||||| |||    
T  1470592 tgtattttatgtgatgc-aaagcaccactcacattgaaagaatttttttttttttttttatcgaacattagtaaaaccaacgatgtttggtggtaagcaa 1470494  T
Q  411 tcagcacaaacataaattaagcatagtagatatgaggaagttgtgttcgatttatagtaagattagacgggatagaattagagctaacatgaacataaat 510  Q
     || |||||||||||||||||||||||||| ||    |||||||||| | | | | |||||  |||||  |||||||||||| |||||||||||||||||    
T  1470493 ccaacacaaacataaattaagcatagtagagatacaaaagttgtgttgggtatgttgtaaggctagacatgatagaattagacctaacatgaacataaat 1470394  T
Q  511 ttatgggacaataatacttgggtttacttg 540  Q
    ||||||| ||||| ||||| ||||||||||    
T  1470393 ttatggggcaatactacttaggtttacttg 1470364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 46145786 - 46145853
Alignment:
Q  166 catttctaacttagaggtgaaagttggagatcatattataccaaaagttgtatggtttaaatattttg 233  Q
    ||||| |||||||||||| |||||||||||| || | |||||| ||||| || |||||||||||||||    
T  46145786 catttttaacttagaggttaaagttggagattatgtcataccacaagttatacggtttaaatattttg 46145853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 179 - 236
Target Start/End: Original strand, 19757714 - 19757771
Alignment:
Q  179 gaggtgaaagttggagatcatattataccaaaagttgtatggtttaaatattttgggt 236  Q
    ||||||||||||||||||||||| |||||  |||||  ||||||||||||| ||||||    
T  19757714 gaggtgaaagttggagatcatatcataccccaagttacatggtttaaatatcttgggt 19757771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 19736812 - 19736862
Alignment:
Q  179 gaggtgaaagttggagatcatattataccaaaagttgtatggtttaaatat 229  Q
    ||||||||||||||||||||||| |||||  |||||  |||||||||||||    
T  19736812 gaggtgaaagttggagatcatatcataccccaagttacatggtttaaatat 19736862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 170 - 236
Target Start/End: Complemental strand, 51448354 - 51448288
Alignment:
Q  170 tctaacttagaggtgaaagttggagatcatattataccaaaagttgtatggtttaaatattttgggt 236  Q
    |||| ||| ||||||||||||||||||||||| |||||  |||||  | ||||||||||| ||||||    
T  51448354 tctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggt 51448288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 170 - 236
Target Start/End: Original strand, 52138465 - 52138531
Alignment:
Q  170 tctaacttagaggtgaaagttggagatcatattataccaaaagttgtatggtttaaatattttgggt 236  Q
    |||| ||| ||||||||||||||||||||||| |||||  |||||  | ||||||||||| ||||||    
T  52138465 tctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggt 52138531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 29817141 - 29817186
Alignment:
Q  169 ttctaacttagaggtgaaagttggagatcatattataccaaaagtt 214  Q
    ||||| ||| ||||||||||||||||||||||| |||||| |||||    
T  29817141 ttctatcttggaggtgaaagttggagatcatatcataccataagtt 29817186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 48221420 - 48221465
Alignment:
Q  169 ttctaacttagaggtgaaagttggagatcatattataccaaaagtt 214  Q
    ||||| ||||||||||||||||| ||||||||| |||||| |||||    
T  48221420 ttctatcttagaggtgaaagttgaagatcatatcataccacaagtt 48221465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 122 - 214
Target Start/End: Complemental strand, 32490417 - 32490325
Alignment:
Q  122 aaaaagacaaagtatatgcaataaaattttaacaagagatgaaacatttctaacttagaggtgaaagttggagatcatattataccaaaagtt 214  Q
    ||||||||| |||||||| |||  || |||| ||| || ||||   ||||||||||| || ||||||||| ||||||||| |||||| |||||    
T  32490417 aaaaagacagagtatatgaaatgcaagtttagcaaaaggtgaagtgtttctaacttatagatgaaagttgaagatcatatcataccacaagtt 32490325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 9e-19; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 125 - 237
Target Start/End: Complemental strand, 41444994 - 41444882
Alignment:
Q  125 aagacaaagtatatgcaataaaattttaacaagagatgaaacatttctaacttagaggtgaaagttggagatcatattataccaaaagttgtatggttta 224  Q
    |||| |||||||||| |||  ||||||| ||| ||  ||| ||||||||||||||||||||||| |||||||||||| |||||| |||||   |||||||    
T  41444994 aagataaagtatatggaatgtaattttagcaaaaggcgaagcatttctaacttagaggtgaaaggtggagatcatatcataccacaagttacttggttta 41444895  T
Q  225 aatattttgggtt 237  Q
    ||||| |||||||    
T  41444894 aatatcttgggtt 41444882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 234
Target Start/End: Original strand, 25985134 - 25985241
Alignment:
Q  125 aagacaaagtatatgcaataaaattttaacaagagatgaaacatttctaacttagaggtgaaagttggagatcatattataccaaaagttgtatggttta 224  Q
    |||||| |||||||| |||  || |||| ||||||  ||| |||||||| |||||||||||||||||  |||||||| |||||| |||||  | ||||||    
T  25985134 aagacagagtatatggaatgtaagtttagcaagaggcgaagcatttctagcttagaggtgaaagttg--gatcatatcataccacaagttacacggttta 25985231  T
Q  225 aatattttgg 234  Q
    ||||| ||||    
T  25985232 aatatattgg 25985241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 179 - 236
Target Start/End: Complemental strand, 15215906 - 15215849
Alignment:
Q  179 gaggtgaaagttggagatcatattataccaaaagttgtatggtttaaatattttgggt 236  Q
    ||||||||||||||||||||||| ||||| ||||||  | ||||||||||| ||||||    
T  15215906 gaggtgaaagttggagatcatatcatacccaaagttacacggtttaaatatattgggt 15215849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 170 - 236
Target Start/End: Complemental strand, 12492487 - 12492421
Alignment:
Q  170 tctaacttagaggtgaaagttggagatcatattataccaaaagttgtatggtttaaatattttgggt 236  Q
    |||| ||| ||||||||||||||||||||||| |||||  |||||  | ||||||||||| ||||||    
T  12492487 tctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggt 12492421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 170 - 236
Target Start/End: Complemental strand, 36565886 - 36565820
Alignment:
Q  170 tctaacttagaggtgaaagttggagatcatattataccaaaagttgtatggtttaaatattttgggt 236  Q
    |||| ||| ||||||||||||||||||||||| |||||  |||||  | ||||||||||| ||||||    
T  36565886 tctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggt 36565820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 199
Target Start/End: Original strand, 35094837 - 35094870
Alignment:
Q  166 catttctaacttagaggtgaaagttggagatcat 199  Q
    |||||||||||| |||||||||||||||||||||    
T  35094837 catttctaacttggaggtgaaagttggagatcat 35094870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 3285124 - 3285164
Alignment:
Q  168 tttctaacttagaggtgaaagttggagatcatattatacca 208  Q
    |||||| | ||||||||||||||||||||||||| ||||||    
T  3285124 tttctagcgtagaggtgaaagttggagatcatatcatacca 3285164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 125 - 214
Target Start/End: Complemental strand, 6368615 - 6368526
Alignment:
Q  125 aagacaaagtatatgcaataaaattttaacaagagatgaaacatttctaacttagaggtgaaagttggagatcatattataccaaaagtt 214  Q
    ||||||| ||||||| | |  ||||||| |||||| ||||||||||||||  |||||||||||| |||||||||||  |||||| |||||    
T  6368615 aagacaaggtatatggattgtaattttagcaagaggtgaaacatttctaatgtagaggtgaaagatggagatcataacataccacaagtt 6368526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 236
Target Start/End: Complemental strand, 2076120 - 2076053
Alignment:
Q  169 ttctaacttagaggtgaaagttggagatcatattataccaaaagttgtatggtttaaatattttgggt 236  Q
    ||||| ||| ||||||||||||||||||||||| |||||  |||||  | ||||||||||| ||||||    
T  2076120 ttctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggt 2076053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 236
Target Start/End: Original strand, 20318627 - 20318694
Alignment:
Q  169 ttctaacttagaggtgaaagttggagatcatattataccaaaagttgtatggtttaaatattttgggt 236  Q
    ||||| ||| ||||||||||||||||||||||| |||||  |||||  | ||||||||||| ||||||    
T  20318627 ttctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggt 20318694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 170 - 236
Target Start/End: Original strand, 3301486 - 3301552
Alignment:
Q  170 tctaacttagaggtgaaagttggagatcatattataccaaaagttgtatggtttaaatattttgggt 236  Q
    |||| ||| ||||||||||||||||||||||| |||||  |||||  | ||||||||||| ||||||    
T  3301486 tctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggt 3301552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 170 - 236
Target Start/End: Original strand, 3394347 - 3394413
Alignment:
Q  170 tctaacttagaggtgaaagttggagatcatattataccaaaagttgtatggtttaaatattttgggt 236  Q
    |||| ||| ||||||||||||||||||||||| |||||  |||||  | ||||||||||| ||||||    
T  3394347 tctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggt 3394413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 170 - 236
Target Start/End: Complemental strand, 28977502 - 28977436
Alignment:
Q  170 tctaacttagaggtgaaagttggagatcatattataccaaaagttgtatggtttaaatattttgggt 236  Q
    |||| ||||||||||||||||||||||||||| |||||  ||||   | ||||||||||| ||||||    
T  28977502 tctaccttagaggtgaaagttggagatcatatcataccccaagtcacacggtttaaatatcttgggt 28977436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 228
Target Start/End: Original strand, 37124204 - 37124265
Alignment:
Q  167 atttctaacttagaggtgaaagttggagatcatattataccaaaagttgtatggtttaaata 228  Q
    ||||||| |||||||||||||||||||||||| || |||| | |||||  || |||||||||    
T  37124204 atttctaccttagaggtgaaagttggagatcaaatcatacaacaagttacattgtttaaata 37124265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 168 - 240
Target Start/End: Original strand, 3096817 - 3096889
Alignment:
Q  168 tttctaacttagaggtgaaagttggagatcatattataccaaaagttgtatggtttaaatattttgggtttat 240  Q
    |||||| | |||||||||||||| ||||||||||   | || |||||  ||||||||||||| ||||||||||    
T  3096817 tttctatcgtagaggtgaaagttagagatcatatctcagcacaagttacatggtttaaatatcttgggtttat 3096889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 10776058 - 10775998
Alignment:
Q  176 ttagaggtgaaagttggagatcatattataccaaaagttgtatggtttaaatattttgggt 236  Q
    ||||||| |||||||||||||||||| |||||| |||||  ||||||||||||| ||||||    
T  10776058 ttagaggggaaagttggagatcatatcataccacaagttacatggtttaaatatcttgggt 10775998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 170 - 236
Target Start/End: Original strand, 435866 - 435932
Alignment:
Q  170 tctaacttagaggtgaaagttggagatcatattataccaaaagttgtatggtttaaatattttgggt 236  Q
    |||| ||| ||||||||||||||||||||||| |||||  |||||  | ||||||||||| ||||||    
T  435866 tctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggt 435932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 170 - 236
Target Start/End: Complemental strand, 23906946 - 23906880
Alignment:
Q  170 tctaacttagaggtgaaagttggagatcatattataccaaaagttgtatggtttaaatattttgggt 236  Q
    |||| ||| ||||||||||||||||||||||| |||||  |||||  | ||||||||||| ||||||    
T  23906946 tctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggt 23906880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 30807242 - 30807292
Alignment:
Q  177 tagaggtgaaagttggagatcatattataccaaaagttgtatggtttaaat 227  Q
    ||||||||||||||||||||||||| |||||| |||||  | |||||||||    
T  30807242 tagaggtgaaagttggagatcatatcataccacaagttacacggtttaaat 30807292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 170 - 236
Target Start/End: Original strand, 33226846 - 33226912
Alignment:
Q  170 tctaacttagaggtgaaagttggagatcatattataccaaaagttgtatggtttaaatattttgggt 236  Q
    |||| ||| ||||||||||||||||||||||| |||||  |||||  | ||||||||||| ||||||    
T  33226846 tctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggt 33226912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 170 - 236
Target Start/End: Original strand, 39708094 - 39708160
Alignment:
Q  170 tctaacttagaggtgaaagttggagatcatattataccaaaagttgtatggtttaaatattttgggt 236  Q
    |||| ||| ||||||||| |||||||||||||||||||  ||||| |  ||||||||||| ||||||    
T  39708094 tctatcttggaggtgaaatttggagatcatattatacctcaagttatgcggtttaaatatcttgggt 39708160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 43562329 - 43562367
Alignment:
Q  162 gaaacatttctaacttagaggtgaaagttggagatcata 200  Q
    |||||||||||||||||||||||||| ||| ||||||||    
T  43562329 gaaacatttctaacttagaggtgaaaattgaagatcata 43562367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 170 - 236
Target Start/End: Complemental strand, 48174738 - 48174672
Alignment:
Q  170 tctaacttagaggtgaaagttggagatcatattataccaaaagttgtatggtttaaatattttgggt 236  Q
    |||| ||| ||||||||||||||||||||||| |||||  |||||  | ||||||||||| ||||||    
T  48174738 tctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggt 48174672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 17667966 - 17667907
Alignment:
Q  175 cttagaggtgaaagttggagatcatattataccaaaagttgtatggtttaaatattttgggtt 237  Q
    ||||||||||||||||||| ||||||| ||||   ||||| ||| |||||||||| |||||||    
T  17667966 cttagaggtgaaagttggatatcatatcatac---aagttatatagtttaaatatattgggtt 17667907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 241
Target Start/End: Original strand, 28528173 - 28528289
Alignment:
Q  125 aagacaaagtatatgcaataaaattttaacaagagatgaaacatttctaacttagaggtgaaagttggagatcatattataccaaaagttgtatggttta 224  Q
    |||||||||||||||  ||| | ||||| ||||||  ||| | |||||| | ||||||||||||||||||||||||  |||||| |||||  |  |||||    
T  28528173 aagacaaagtatatgggatatagttttagcaagaggcgaagcgtttctagcctagaggtgaaagttggagatcatagcataccacaagttacacagttta 28528272  T
Q  225 aatattttgggtttatg 241  Q
    ||||| |||||| ||||    
T  28528273 aatatcttgggtctatg 28528289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 6640748 - 6640822
Alignment:
Q  155 aagagatgaaacatttctaacttagaggtgaaagttggagatcatattataccaaaagttgtatggtttaaatat 229  Q
    |||||||||||| ||||||   |||||||||||||| |||||||||||| |||| |||||  | |||||||||||    
T  6640748 aagagatgaaacgtttctagtgtagaggtgaaagttagagatcatattacaccacaagttacacggtttaaatat 6640822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 170 - 236
Target Start/End: Original strand, 8671557 - 8671623
Alignment:
Q  170 tctaacttagaggtgaaagttggagatcatattataccaaaagttgtatggtttaaatattttgggt 236  Q
    |||| ||| ||||||||||||||||||||||| |||||  |||||  | ||||||||||| ||||||    
T  8671557 tctaccttggaggtgaaagttggagatcatatcataccctaagttacacggtttaaatatcttgggt 8671623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 170 - 236
Target Start/End: Original strand, 51601695 - 51601761
Alignment:
Q  170 tctaacttagaggtgaaagttggagatcatattataccaaaagttgtatggtttaaatattttgggt 236  Q
    |||| ||| ||||||||||||||||||||||| |||||  |||||  | ||||||||||| ||||||    
T  51601695 tctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggt 51601761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 206
Target Start/End: Complemental strand, 16273519 - 16273438
Alignment:
Q  125 aagacaaagtatatgcaataaaattttaacaagagatgaaacatttctaacttagaggtgaaagttggagatcatattatac 206  Q
    |||||| |||||||| |||  ||||| ||||| |||||||| | ||  | ||||||| ||||||||||||||||||| ||||    
T  16273519 aagacatagtatatgtaatgtaatttcaacaaaagatgaaatagtttgaccttagagatgaaagttggagatcatatcatac 16273438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 40419314 - 40419362
Alignment:
Q  166 catttctaacttagaggtgaaagttggagatcatattataccaaaagtt 214  Q
    |||||||| | || |||||||||||||||||||||| |||||| |||||    
T  40419314 catttctagcgtaaaggtgaaagttggagatcatatcataccacaagtt 40419362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 170 - 234
Target Start/End: Complemental strand, 43241026 - 43240962
Alignment:
Q  170 tctaacttagaggtgaaagttggagatcatattataccaaaagttgtatggtttaaatattttgg 234  Q
    |||| ||| ||||||||||||||||||||||| |||||  |||||  | ||||||||||| ||||    
T  43241026 tctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgg 43240962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 394 - 478
Target Start/End: Complemental strand, 52442909 - 52442825
Alignment:
Q  394 tgtttggtggtaaacaatcagcacaaacataaattaagcatagtagatatgaggaagttgtgttcgatttatagtaagattagac 478  Q
    |||||||||||||  || || |||||| ||||||||||| ||| ||| ||||||| |||||||| ||| | | |||||| |||||    
T  52442909 tgtttggtggtaatgaaacaacacaaaaataaattaagcgtagcagacatgaggatgttgtgttggatgtgtggtaagactagac 52442825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 236
Target Start/End: Complemental strand, 11992751 - 11992685
Alignment:
Q  170 tctaacttagaggtgaaagttggagatcatattataccaaaagttgtatggtttaaatattttgggt 236  Q
    |||| ||||||||||||||||||||||||||| |||||  |||||  | ||||||||||| ||||||    
T  11992751 tctaccttagaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggt 11992685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 214
Target Start/End: Original strand, 26433786 - 26433884
Alignment:
Q  116 aagtagaaaaagacaaagtatatgcaataaaattttaacaagagatgaaacatttctaacttagaggtgaaagttggagatcatattataccaaaagtt 214  Q
    ||||||||  |||||||||||||| ||| ||||| ||  || || |  || ||||||||||||||| ||||||||||||||||| | |||||| |||||    
T  26433786 aagtagaagcagacaaagtatatggaatgaaattgtagaaaaaggtttaatatttctaacttagagatgaaagttggagatcatgtcataccacaagtt 26433884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 170 - 236
Target Start/End: Original strand, 2610165 - 2610231
Alignment:
Q  170 tctaacttagaggtgaaagttggagatcatattataccaaaagttgtatggtttaaatattttgggt 236  Q
    |||| ||| ||||||||||||||||||||||| |||||  |||||  | ||||||||||| ||||||    
T  2610165 tctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggt 2610231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 170 - 236
Target Start/End: Original strand, 8180417 - 8180483
Alignment:
Q  170 tctaacttagaggtgaaagttggagatcatattataccaaaagttgtatggtttaaatattttgggt 236  Q
    |||| ||| ||||||||||||||||||||||| ||||   |||||  | ||||||||||||||||||    
T  8180417 tctaccttggaggtgaaagttggagatcatatcatactccaagttacacggtttaaatattttgggt 8180483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 201
Target Start/End: Original strand, 28317381 - 28317414
Alignment:
Q  168 tttctaacttagaggtgaaagttggagatcatat 201  Q
    |||||| |||||||||||||||||||||||||||    
T  28317381 tttctagcttagaggtgaaagttggagatcatat 28317414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 12232 - 12177
Alignment:
Q  181 ggtgaaagttggagatcatattataccaaaagttgtatggtttaaatattttgggt 236  Q
    ||||||||||||||||||||| |||||  |||||  ||||||||||||| ||||||    
T  12232 ggtgaaagttggagatcatatcataccccaagttacatggtttaaatatcttgggt 12177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 170 - 236
Target Start/End: Original strand, 32630244 - 32630310
Alignment:
Q  170 tctaacttagaggtgaaagttggagatcatattataccaaaagttgtatggtttaaatattttgggt 236  Q
    |||| ||| ||||||||||||||||||||||| |||||  |||||  | ||||||||||| ||||||    
T  32630244 tctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggt 32630310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 170 - 236
Target Start/End: Complemental strand, 46356496 - 46356430
Alignment:
Q  170 tctaacttagaggtgaaagttggagatcatattataccaaaagttgtatggtttaaatattttgggt 236  Q
    |||| ||| ||||||||||||||||||||||| |||||  |||||  | ||||||||||| ||||||    
T  46356496 tctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggt 46356430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 214
Target Start/End: Original strand, 32484079 - 32484168
Alignment:
Q  125 aagacaaagtatatgcaataaaattttaacaagagatgaaacatttctaacttagaggtgaaagttggagatcatattataccaaaagtt 214  Q
    |||||||||||| || |||  ||||||| ||||||  |||||||||||| |||||| |||| ||||  | ||||||| |||||| |||||    
T  32484079 aagacaaagtatgtggaatgtaattttatcaagaggagaaacatttctatcttagatgtgagagttaaatatcatatcataccacaagtt 32484168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 203
Target Start/End: Complemental strand, 33737980 - 33737943
Alignment:
Q  166 catttctaacttagaggtgaaagttggagatcatatta 203  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  33737980 catttctaacttagaggtgaaagtttgagaacatatta 33737943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 170 - 236
Target Start/End: Complemental strand, 10100502 - 10100436
Alignment:
Q  170 tctaacttagaggtgaaagttggagatcatattataccaaaagttgtatggtttaaatattttgggt 236  Q
    |||| ||| ||||||||||||||||||||||| |||||  |||||  | ||||||||||| ||||||    
T  10100502 tctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggt 10100436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 236
Target Start/End: Complemental strand, 20428272 - 20428215
Alignment:
Q  179 gaggtgaaagttggagatcatattataccaaaagttgtatggtttaaatattttgggt 236  Q
    ||||||||||||||||||||||| |||||| |||||    ||||||||||| ||||||    
T  20428272 gaggtgaaagttggagatcatatcataccacaagttacgcggtttaaatatattgggt 20428215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 236
Target Start/End: Complemental strand, 2906 - 2849
Alignment:
Q  179 gaggtgaaagttggagatcatattataccaaaagttgtatggtttaaatattttgggt 236  Q
    ||||||||||||||||||||||| |||||  |||||  | ||||||||||| ||||||    
T  2906 gaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggt 2849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 236
Target Start/End: Original strand, 5838 - 5895
Alignment:
Q  179 gaggtgaaagttggagatcatattataccaaaagttgtatggtttaaatattttgggt 236  Q
    ||||||||||||||||||||||| |||||  |||||  | ||||||||||| ||||||    
T  5838 gaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggt 5895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University