View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15598_high_6 (Length: 514)
Name: NF15598_high_6
Description: NF15598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15598_high_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 10 - 497
Target Start/End: Original strand, 30349432 - 30349919
Alignment:
| Q |
10 |
gtgagaagaaagaaaaaagatgaatgcaaattaaagtcagtttgacattattgatcttatccgacaatactaatatgcacttacatttaatttttatata |
109 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||| | |
|
|
| T |
30349432 |
gtgaaaagaaaggaaaaagatgaatgcaaattaaagtcagtttaacattattgatcttatccgataatactaatatgcacttatatttaatttttataaa |
30349531 |
T |
|
| Q |
110 |
catgtcatactaaaaataaaattgtaggaattaaaatcgaannnnnnnatttgcttgtaactaaaaaatatatttaagtcttaatttttcatggaattca |
209 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30349532 |
catgtcatactaaaaataaaattttaggaattaaaatcgaatttttttatttgtttgtaactaaaaaatatatttaagtcttaatttttcatggaattca |
30349631 |
T |
|
| Q |
210 |
annnnnnnatgtttaattgcagtggagaaagaagaggacttagaagaagcagaaatggagatggaaatagggtgtccaacagatgtacaacatgtgacac |
309 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30349632 |
acttttttatgtttaattgcagtggagaaagaagaggacttagaagaagcagaaatggacatggaaatagggtgtccaacagatgtacaacatgtgacac |
30349731 |
T |
|
| Q |
310 |
acataggttgggatggtgttacaacctcatgtgctgctcatgacccaatgaggggatgggattctctcattcctcctgagcttctctctgtagcctctca |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30349732 |
acataggttgggatggtgttacaacctcatgtgctgctcatgacccaatgaggggatgggattctctcattcctcctgagcttctctctgtagcctctca |
30349831 |
T |
|
| Q |
410 |
atctttacagacaaaacatgaaacaacatctcccatcaacatcatgccttctattgcttgattaattgaagattgtatcttttaaatg |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30349832 |
atctttacagacaaaacatgaaacaacatctcccatcaacatcatgccttctattgcttgattaattgaagattgtatcttttaaatg |
30349919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University