View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15598_high_7 (Length: 512)
Name: NF15598_high_7
Description: NF15598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15598_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 13 - 476
Target Start/End: Original strand, 30849512 - 30849969
Alignment:
| Q |
13 |
aatatggtactatattgtgattaacatttttattcttaattttgtcnnnnnnngttattcataatttgtacgagattannnnnnncaagtagtctaactg |
112 |
Q |
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| T |
30849512 |
aatatggtactatattgtgattaacatttttattcttaattttgtcaaaaaaagttattcataatttgtacgagattatttttttcaagtagtctaactg |
30849611 |
T |
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| Q |
113 |
ttaaaaattcatcgaggttgtcgattagaatccaacttcttattgtttgtgtgttcagtgttctgaaaccattctatctcaaaaccgtgtttaatttcca |
212 |
Q |
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| T |
30849612 |
ttaaaaattcatcgaggttgtcgattagaatccaacttcttattgtttgtgtgttc--------gaaaccattctatctcaaaaccgtgtttaatttcca |
30849703 |
T |
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| Q |
213 |
gattatttttaaccctattatatgcatgatgtatctgtcgattttgtcaggtatccgtttttgactatatccatggtgnnnnnnnntattgaaactta-- |
310 |
Q |
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| T |
30849704 |
gattatttttaaccctattatatgcatgaagtatctgtcgattttgtcaggtatccgttttcgactatatccatggtgaaaaaaa-tattgaaacttaaa |
30849802 |
T |
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| Q |
311 |
-ctttatttcaaggatccaaaattggctcaacatgggaaacatctcattctaatgttatattatgacattattttctaaaatgatgtttgaataattaca |
409 |
Q |
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|||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
30849803 |
actttatttcaaggatccaaatttggctcaacatgggcaacatctcattctaatgttatattatgacattattttctaaaatgttgtttgaataattaca |
30849902 |
T |
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| Q |
410 |
aaatgataccctcaaaaagaataattacaaaagtttaaattgtcgatgcatacattcattaataaag |
476 |
Q |
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| T |
30849903 |
aaatgataccctcaaaaagaataattacaaaagtttaaattgtcgatgcatacattcattaataaag |
30849969 |
T |
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