View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15598_high_9 (Length: 481)
Name: NF15598_high_9
Description: NF15598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15598_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 19 - 466
Target Start/End: Complemental strand, 36696327 - 36695880
Alignment:
| Q |
19 |
ctaaagctatctgctcttccgcttttcaatagagcagaagcttcaaatatttcccatagtaaatataattaaaccaaccccatataacaaaattttctaa |
118 |
Q |
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| T |
36696327 |
ctaaagctatctgctcttccagttttcaatagagcagaagcttcaaatatttcccataataaatataattaaaccaaccccatataacaaaattttctaa |
36696228 |
T |
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| Q |
119 |
aacttttagttagggttgtgaaatttttatagaatggtgtctgaaccaaattcaagtgtgatcacaaagttttggcaatgtttgatgaacttgcctaatg |
218 |
Q |
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| T |
36696227 |
aacttttagttagggttgtgaaatttttatagaatggtgtctgaaccaaattcaagtgtgatcacaaagttttggcaatgtttgatgaacttgcctaatg |
36696128 |
T |
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| Q |
219 |
agtttactattaaagtagtaaatgtgatgttgcagctgaaggaattgggaaaagaagatccaagaagggtcattcattctttgaaagtagcatttgctat |
318 |
Q |
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| T |
36696127 |
agtttactattaaagtagtaaatgtgatgttgcagctgaaggaattgggaaaagaagatccaagaagggtcattcattctttgaaagtagcatttgctat |
36696028 |
T |
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| Q |
319 |
tacattggtttcaacattttactatcttaaacctctctatgatagttttggttcttctgcaatgtgggctgttatgactgttgttgttgtctccgaattc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36696027 |
tacattggtttcaacattttactatcttaaacctctctatgatagttttggttcttctgcaatgtgggctgttatgactgttgttgttgtctccgaattc |
36695928 |
T |
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| Q |
419 |
tctgtaggcaagttttgttccttgtttttcttggttttaatcatgcat |
466 |
Q |
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| T |
36695927 |
tctgtaggcaagttttgttccttgtttttcttggttttaatcatgcat |
36695880 |
T |
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