View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15598_low_15 (Length: 427)

Name: NF15598_low_15
Description: NF15598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15598_low_15
NF15598_low_15
[»] chr8 (4 HSPs)
chr8 (13-427)||(2792146-2792560)
chr8 (13-112)||(2782483-2782595)
chr8 (230-427)||(44164735-44164931)
chr8 (255-427)||(17724465-17724628)
[»] chr3 (5 HSPs)
chr3 (285-427)||(30694409-30694549)
chr3 (255-427)||(33813112-33813283)
chr3 (285-427)||(46589624-46589764)
chr3 (215-313)||(45730497-45730596)
chr3 (295-372)||(45730416-45730493)
[»] chr2 (4 HSPs)
chr2 (214-427)||(17909620-17909835)
chr2 (255-345)||(11502532-11502621)
chr2 (230-427)||(6095885-6096082)
chr2 (248-395)||(8207535-8207679)
[»] scaffold0161 (2 HSPs)
scaffold0161 (214-374)||(26941-27102)
scaffold0161 (221-335)||(7886-8001)
[»] chr1 (5 HSPs)
chr1 (230-395)||(10484602-10484765)
chr1 (285-427)||(27024031-27024171)
chr1 (230-328)||(19251511-19251610)
chr1 (330-424)||(19251402-19251495)
chr1 (213-284)||(39394707-39394779)
[»] chr5 (4 HSPs)
chr5 (230-427)||(5585871-5586068)
chr5 (292-394)||(11141171-11141273)
chr5 (233-389)||(25086110-25086273)
chr5 (233-389)||(25144080-25144243)
[»] chr7 (1 HSPs)
chr7 (292-415)||(37381724-37381845)
[»] chr4 (5 HSPs)
chr4 (255-427)||(22209545-22209716)
chr4 (285-371)||(8191896-8191982)
chr4 (292-394)||(54421200-54421302)
chr4 (287-427)||(42935761-42935897)
chr4 (347-427)||(19878503-19878583)
[»] chr6 (4 HSPs)
chr6 (295-427)||(19403527-19403657)
chr6 (295-415)||(15107461-15107579)
chr6 (230-394)||(3622075-3622240)
chr6 (214-267)||(34355316-34355370)
[»] scaffold0105 (1 HSPs)
scaffold0105 (285-371)||(18471-18557)
[»] scaffold0013 (1 HSPs)
scaffold0013 (230-427)||(44323-44519)
[»] scaffold0317 (1 HSPs)
scaffold0317 (214-266)||(19843-19896)


Alignment Details
Target: chr8 (Bit Score: 387; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 13 - 427
Target Start/End: Original strand, 2792146 - 2792560
Alignment:
Q  13 tactatagttttgtgctttttctgctgatttgcatctttggtaaacaaatactaacgagtcataagaagtgtatgggaaatttagtgcagtttcgaagta 112  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2792146 tactagagttttgtgctttttctgctgatttgcatctttggtaaacaaatactaacgagtcataagaagtgtatgggaaatttagtgcagtttcgaagta 2792245  T
Q  113 tagttttgtgctttttctcctgaatcaaactcttttttcatttgaacctaacggtgtaaaaaggtcattggtggttaaacttatgattagggagggaata 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||    
T  2792246 tagttttgtgctttttctcctgaatcaaactcttttttcatttgaacctaaaggggtaaaaaggtcattggtggttaaacttatgactagggagggaata 2792345  T
Q  213 gtgttctctatggtttatcatttttattttgttgattccacctttgattacttccactaaatttaatttacaactttgattccatattcatttttattga 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2792346 gtgttctctatggtttatcatttttattttgttgattccacctttgattacttccactaaatttaatttacaactttgattccatattcatttttattga 2792445  T
Q  313 tgcaagctaaatgtttctaatttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaatttgattgtttctacgagcttaattgtaact 412  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  2792446 tgcaagctaaatgtttttaatttgcttttttgatattgtgtatgtcgatcactctcaatcatcatttagtttgattgtttctacgagcttaattgtaact 2792545  T
Q  413 ctaaaagtaataata 427  Q
    |||||||||||||||    
T  2792546 ctaaaagtaataata 2792560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 2782483 - 2782595
Alignment:
Q  13 tactatagttttgtgctttttctgctgatttgcatctttggtaaacaaatactaa-------cgagtcataagaagtgt------atgggaaatttagtg 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||      |||||||||||||||    
T  2782483 tactatagttttgtgctttttctgctgatttgcatctttggtaaacaaatactaactccagtcgagtcataagaagtgtacattcatgggaaatttagtg 2782582  T
Q  100 cagtttcgaagta 112  Q
    |||||||||||||    
T  2782583 cagtttcgaagta 2782595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 230 - 427
Target Start/End: Original strand, 44164735 - 44164931
Alignment:
Q  230 tcatttttattttgttgatt-ccacctttgattacttccactaaatttaatttacaactttgattccatattcatttttattgatgcaagctaaatgttt 328  Q
    ||||||||||| |||| ||| |||  |||||||| || |||  |||||||||||  ||||||||||||||||||||||| ||||||||| || | |||||    
T  44164735 tcatttttattgtgtttatttccatgtttgattattttcacataatttaatttatgactttgattccatattcatttttgttgatgcaaactga-tgttt 44164833  T
Q  329 ctaatttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaatttgattgtttctacgagcttaattgtaactctaaaagtaataata 427  Q
     ||||||  |||||||| ||| || ||||||| |||||||||||| ||  || |||||||||||||| ||  |||| ||||||||||||| ||||||||    
T  44164834 ttaatttt-ttttttgagattttgcatgtcgaccactctcaatcatcacatagtttgattgtttctatgactttaagtgtaactctaaaattaataata 44164931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 255 - 427
Target Start/End: Complemental strand, 17724628 - 17724465
Alignment:
Q  255 tttgattacttccactaaatttaatttacaactttgattccatattcatttttattgatgcaagctaaatgtttctaatttgcttttttgatattgtgta 354  Q
    ||||||||||| |||  |||||||||||  ||||| ||||||||||||||||| ||||||||| |          | |||||||||||||| ||| || |    
T  17724628 tttgattactttcacataatttaatttatgactttaattccatattcatttttgttgatgcaaaca---------tcatttgcttttttgaaattttgca 17724538  T
Q  355 tgtcgatcactctcaatcaccatttaatttgattgtttctacgagcttaattgtaactctaaaagtaataata 427  Q
    |||| | |||||||||||| || ||| |||||||||||||| ||  || | ||| ||||||||| ||||||||    
T  17724537 tgtctaccactctcaatcatcacttagtttgattgtttctatgactttgaatgtgactctaaaattaataata 17724465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 285 - 427
Target Start/End: Complemental strand, 30694549 - 30694409
Alignment:
Q  285 actttgattccatattcatttttattgatgcaagctaaatgtttctaatttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaattt 384  Q
    ||||||||||||||||||||||||||||||||| |||||||||  |||||||||| ||||| ||||||||||||||||||| |||||   || ||| |||    
T  30694549 actttgattccatattcatttttattgatgcaaactaaatgttgttaatttgcttctttgagattgtgtatgtcgatcactttcaattgtcacttacttt 30694450  T
Q  385 gattgtttctacgagcttaattgtaactctaaaagtaataata 427  Q
    || |||||||  ||| |||| |||||||||| |||||||||||    
T  30694449 gaatgtttct--gagtttaaatgtaactctacaagtaataata 30694409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 255 - 427
Target Start/End: Complemental strand, 33813283 - 33813112
Alignment:
Q  255 tttgattacttccactaaatttaatttacaactttgattccatattcatttttattgatgcaagctaaatgtttctaatttgcttttttgatattgtgta 354  Q
    ||||||||||| ||| ||||||||||||  ||||||||||||||||||||||| ||||| ||| || ||| ||| ||||||  ||| |||| ||| || |    
T  33813283 tttgattactttcacaaaatttaatttatgactttgattccatattcatttttgttgatacaaact-aatatttttaatttattttgttgagattttgca 33813185  T
Q  355 tgtcgatcactctcaatcaccatttaatttgattgtttctacgagcttaattgtaactctaaaagtaataata 427  Q
    |||||| || |||||||||  | ||| |||||||||||||| ||  |||| ||||||||||||| ||||||||    
T  33813184 tgtcgaccattctcaatcattacttagtttgattgtttctatgactttaaatgtaactctaaaattaataata 33813112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 285 - 427
Target Start/End: Complemental strand, 46589764 - 46589624
Alignment:
Q  285 actttgattccatattcatttttattgatgcaagctaaatgtttctaatttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaattt 384  Q
    ||||||||| ||||||||||||| |||||||||  |||||||| ||||||||||| ||||| |||||| |||||||||| | |||||   || |||||||    
T  46589764 actttgatttcatattcatttttgttgatgcaaattaaatgttgctaatttgcttctttgagattgtgcatgtcgatcaatttcaattgtcacttaattt 46589665  T
Q  385 gattgtttctacgagcttaattgtaactctaaaagtaataata 427  Q
    ||||||||||  ||| ||||  ||||||||| || ||||||||    
T  46589664 gattgtttct--gagtttaaacgtaactctacaaataataata 46589624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 215 - 313
Target Start/End: Complemental strand, 45730596 - 45730497
Alignment:
Q  215 gttctctatggtttatcatttttattttgttgatt-ccacctttgattacttccactaaatttaatttacaactttgattccatattcatttttattgat 313  Q
    ||||| |||| ||| ||||||||||| |||| ||| ||| ||||||||| |||||||||||||||||||  | |||||||||||||| |||||| |||||    
T  45730596 gttctttatgatttgtcatttttattgtgttcatttccagctttgattagttccactaaatttaatttatgattttgattccatatttatttttgttgat 45730497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 372
Target Start/End: Complemental strand, 45730493 - 45730416
Alignment:
Q  295 catattcatttttattgatgcaagctaaatgtttctaatttgcttttttgatattgtgtatgtcgatcactctcaatc 372  Q
    ||||||||||||| |||||| ||  |||||||   |||||||||| ||||| |||||| || ||||||||||||||||    
T  45730493 catattcatttttgttgatgtaaattaaatgtggttaatttgcttctttgagattgtgcatatcgatcactctcaatc 45730416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 214 - 427
Target Start/End: Original strand, 17909620 - 17909835
Alignment:
Q  214 tgttctctatggtttatcatttttattttgttgattc-cacctttgattacttccactaaatttaatttacaactttgatt-ccatattcatttttattg 311  Q
    ||||||||||| ||| ||||||||||| ||||||||  ||||||| ||||||| |||| |||||||||||  ||||||||| |||||||||||||| |||    
T  17909620 tgttctctatgatttgtcatttttattgtgttgattttcacctttcattactttcactgaatttaatttatgactttgatttccatattcatttttgttg 17909719  T
Q  312 atgcaagctaaatgtttctaatttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaatttgattgtttctacgagcttaattgtaac 411  Q
    ||||||  | ||| || || || |||||||||||  ||||  || ||||||||||| ||||| || ||| ||| ||||||| || ||| || | ||||||    
T  17909720 atgcaaattgaatattgctcatctgcttttttgaggttgttcatatcgatcactcttaatcatcacttagtttaattgtttttatgagtttgaatgtaac 17909819  T
Q  412 tctaaaagtaataata 427  Q
    ||||||||||||||||    
T  17909820 tctaaaagtaataata 17909835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 255 - 345
Target Start/End: Original strand, 11502532 - 11502621
Alignment:
Q  255 tttgattacttccactaaatttaatttacaactttgattccatattcatttttattgatgcaagctaaatgtttctaatttgcttttttga 345  Q
    ||||||||||| |||  |||||||||||  ||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||    
T  11502532 tttgattactttcacataatttaatttatgactttgattccatattcatttttgttgatgcaaact-aatgtttctaatttgcttttttga 11502621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 230 - 427
Target Start/End: Original strand, 6095885 - 6096082
Alignment:
Q  230 tcatttttattttgttgatt-ccacctttgattacttccactaaatttaatttacaactttgattccatattcatttttattgatgcaagctaaatgttt 328  Q
    ||||||||||| |||| ||| |||| ||||||||||| |||  |||||| ||||  | |||||||||||||| |||||| |||||||||    |||||||    
T  6095885 tcatttttattgtgtttatttccacgtttgattactttcacataatttagtttatgagtttgattccatatttatttttgttgatgcaaagagaatgttt 6095984  T
Q  329 ctaatttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaatttgattgtttctacgagcttaattgtaactctaaaagtaataata 427  Q
     ||| || ||||||||| ||| || ||||| || ||||||||||| || ||| ||||||| |||| | ||  || | ||||||||||||| ||||||||    
T  6095985 ttaactttcttttttgagattttgcatgtcaat-actctcaatcatcacttagtttgattatttccatgactttgaatgtaactctaaaattaataata 6096082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 395
Target Start/End: Complemental strand, 8207679 - 8207535
Alignment:
Q  248 ttccacctttgattacttccactaaatttaatttacaactttgattccatattcatttttattgatgcaagctaaatgtttctaatttgcttttttgata 347  Q
    |||||| ||||||||||| |||  |||||| ||||  | |||| || ||||| ||||||| || |||||| | ||||||||||||||| ||||||||| |    
T  8207679 ttccacgtttgattactttcacataatttagtttatgagtttggtttcatatgcatttttttt-atgcaaacaaaatgtttctaattttcttttttgaga 8207581  T
Q  348 ttgtgtatgtcgatcactctcaatcaccatttaatttgattgtttcta 395  Q
    || ||||||| |  ||||||||||||  | ||||||||||||| ||||    
T  8207580 ttttgtatgttg-gcactctcaatca-tacttaatttgattgtgtcta 8207535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 214 - 374
Target Start/End: Complemental strand, 27102 - 26941
Alignment:
Q  214 tgttctctatggtttatcatttttattttgttgatt-ccacctttgattacttccactaaatttaatttacaactttgattccatattcatttttattga 312  Q
    ||||||||||| ||||||||||||||| |||| ||| ||||||||||||| ||||||||||||||||| |  | | ||||| ||||||||||||| || |    
T  27102 tgttctctatgatttatcatttttattgtgtttatttccacctttgattatttccactaaatttaattaatgattatgatttcatattcatttttgttaa 27003  T
Q  313 tgcaagctaaatgtttctaatttgcttttttgatattgtgtatgtcgatcactctcaatcac 374  Q
    || || || |||||||||||||||  | ||| | |||||| |||||||||||||||||||||    
T  27002 tgtaaactgaatgtttctaatttgtctctttaagattgtgcatgtcgatcactctcaatcac 26941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 335
Target Start/End: Complemental strand, 8001 - 7886
Alignment:
Q  221 tatggtttatcatttttattttgttgatt-ccacctttgattacttccactaaatttaatttacaactttgattccatattcatttttattgatgcaagc 319  Q
    |||| ||||||||||||||| |||| ||| |||  | |||||| ||||||||||||||||| |  ||| ||||| |||||| |||||| ||||  ||| |    
T  8001 tatgatttatcatttttattatgtttatttccagatctgattatttccactaaatttaattaatgactatgatttcatatttatttttgttgagacaaac 7902  T
Q  320 taaatgtttctaattt 335  Q
    ||||| ||| ||||||    
T  7901 taaatatttttaattt 7886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 230 - 395
Target Start/End: Original strand, 10484602 - 10484765
Alignment:
Q  230 tcatttttattttgttgattccacctttgattacttccactaaatttaatttacaactttgattccatattcatttttattgatgcaagctaaatgtttc 329  Q
    ||||||||||| ||||  |||||| ||||||||||| |||  |||||||||||  | ||||||||||||||||||||| ||||||||| |  ||||||||    
T  10484602 tcatttttattgtgttatttccacgtttgattactttcacataatttaatttatgagtttgattccatattcatttttgttgatgcaaacagaatgtttc 10484701  T
Q  330 taatttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaatttgattgtttcta 395  Q
    |||||| ||||||||| ||| ||||||| || ||||||||||||  ||||| ||||||||||||||    
T  10484702 taattttcttttttgagattttgtatgttga-cactctcaatca-tatttagtttgattgtttcta 10484765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 285 - 427
Target Start/End: Complemental strand, 27024171 - 27024031
Alignment:
Q  285 actttgattccatattcatttttattgatgcaagctaaatgtttctaatttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaattt 384  Q
    ||||||||||||||||||||||| || |||||| |||||||||  |||||||||| ||||| |||||| |||||||||||| |||||   || ||| |||    
T  27024171 actttgattccatattcatttttgtttatgcaaactaaatgttgttaatttgcttctttgagattgtgcatgtcgatcactttcaattgtcacttagttt 27024072  T
Q  385 gattgtttctacgagcttaattgtaactctaaaagtaataata 427  Q
    |||||||| |  ||| |||| |||||||||| | |||||||||    
T  27024071 gattgttttt--gagtttaaatgtaactctacacgtaataata 27024031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 230 - 328
Target Start/End: Complemental strand, 19251610 - 19251511
Alignment:
Q  230 tcatttttattttgttgatt-ccacctttgattacttccactaaatttaatttacaactttgattccatattcatttttattgatgcaagctaaatgttt 328  Q
    ||||||||||| |||| ||| |||| ||||||||||| |||  |||||| |||| || ||||||||||||||||||||| ||||||||| | ||||||||    
T  19251610 tcatttttattgtgtttatttccacatttgattactttcacagaatttagtttataagtttgattccatattcatttttgttgatgcaaacaaaatgttt 19251511  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 424
Target Start/End: Complemental strand, 19251495 - 19251402
Alignment:
Q  330 taatttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaatttgattgtttctacgagcttaattgtaactctaaaagtaata 424  Q
    |||||| ||||||| | ||| || ||||||| |||||||||||| || ||| |||||||||||||| ||  || | ||||||||||||| |||||    
T  19251495 taattttcttttttaagattttgcatgtcga-cactctcaatcatcacttagtttgattgtttctatgactttgaatgtaactctaaaattaata 19251402  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 284
Target Start/End: Original strand, 39394707 - 39394779
Alignment:
Q  213 gtgttctctatggtttatcatttttattttgttga-ttccacctttgattacttccactaaatttaatttaca 284  Q
    ||||||| |||| ||| ||||||||||| |||||| ||||| |||| ||||||| || | |||||||||||||    
T  39394707 gtgttctttatgatttgtcatttttattgtgttgatttccatctttcattactttcattgaatttaatttaca 39394779  T

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Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 230 - 427
Target Start/End: Complemental strand, 5586068 - 5585871
Alignment:
Q  230 tcatttttattttgttgatt-ccacctttgattacttccactaaatttaatttacaactttgattccatattcatttttattgatgcaagctaaatgttt 328  Q
    ||||||||||| |||| ||| |||  ||||||||||| |||  |||||| ||||  | |||||||| |||||||||||| ||||||||| | ||||||||    
T  5586068 tcatttttattgtgtttatttccatgtttgattactttcacagaatttagtttatgagtttgattctatattcatttttgttgatgcaaacaaaatgttt 5585969  T
Q  329 ctaatttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaatttgattgtttctacgagcttaattgtaactctaaaagtaataata 427  Q
    ||||||| ||||||||| ||| ||||||| ||| ||||||||||| || ||| |||||||||| ||| ||  ||   ||||||||||||| ||||||||    
T  5585968 ctaattttcttttttgagattttgtatgttgat-actctcaatcatcacttagtttgattgttactatgactttggatgtaactctaaaattaataata 5585871  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 292 - 394
Target Start/End: Original strand, 11141171 - 11141273
Alignment:
Q  292 ttccatattcatttttattgatgcaagctaaatgtttctaatttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaatttgattgtt 391  Q
    |||||||||||||||| ||||||||| |||||||||  |||||| ||| | ||| |||||| ||||||||||||||||||   || ||||||||||||||    
T  11141171 ttccatattcatttttgttgatgcaaactaaatgttgttaatttacttctatgaaattgtgcatgtcgatcactctcaattgtcacttaatttgattgtt 11141270  T
Q  392 tct 394  Q
    |||    
T  11141271 tct 11141273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 233 - 389
Target Start/End: Original strand, 25086110 - 25086273
Alignment:
Q  233 tttttattttgttgatt-ccacctttgattacttccactaaatttaatttacaactttgattccatattcatttttattgatgcaagctaaatgtt---- 327  Q
    |||||||| |||||||| ||||| || ||| |||||||| ||||||||| |  || ||| |||||||||||||||| |||||||||  | | ||||        
T  25086110 tttttattgtgttgatttccacccttcattgcttccactgaatttaattcatgacgttgtttccatattcatttttgttgatgcaaattgagtgttgttg 25086209  T
Q  328 -tctaatttgctttttt-gatattgtgtatgtcgatcactctcaatcaccatttaatttgattg 389  Q
     ||| || ||||||||| || |||||| |||||||||||||||||||| |||||| ||||||||    
T  25086210 atctgatctgctttttttgagattgtgcatgtcgatcactctcaatcatcatttagtttgattg 25086273  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 233 - 389
Target Start/End: Original strand, 25144080 - 25144243
Alignment:
Q  233 tttttattttgttgatt-ccacctttgattacttccactaaatttaatttacaactttgattccatattcatttttattgatgcaagctaaatgtt---- 327  Q
    |||||||| |||||||| ||||| || ||| |||||||| ||||||||| |  || ||| |||||||||||||||| |||||||||  | | ||||        
T  25144080 tttttattgtgttgatttccacccttcattgcttccactgaatttaattcatgacgttgtttccatattcatttttgttgatgcaaattgagtgttgttg 25144179  T
Q  328 -tctaatttgctttttt-gatattgtgtatgtcgatcactctcaatcaccatttaatttgattg 389  Q
     ||| || ||||||||| || |||||| |||||||||||||||||||| |||||| ||||||||    
T  25144180 atctgatctgctttttttgagattgtgcatgtcgatcactctcaatcatcatttagtttgattg 25144243  T

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Target: chr7 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 292 - 415
Target Start/End: Original strand, 37381724 - 37381845
Alignment:
Q  292 ttccatattcatttttattgatgcaagctaaatgtttctaatttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaatttgattgtt 391  Q
    |||||||||||||||| ||||||||| |||||||||  |||||||||| ||||| ||||||||| |||||||||||||||   || ||||||||||||||    
T  37381724 ttccatattcatttttgttgatgcaaactaaatgttgttaatttgcttctttgagattgtgtatatcgatcactctcaattgtcacttaatttgattgtt 37381823  T
Q  392 tctacgagcttaattgtaactcta 415  Q
    |||  ||| |||| ||||||||||    
T  37381824 tct--gagtttaaatgtaactcta 37381845  T

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Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 255 - 427
Target Start/End: Original strand, 22209545 - 22209716
Alignment:
Q  255 tttgattacttccactaaatttaatttacaactttgattccatattcatttttattgatgcaagctaaatgtttctaatttgcttttttgatattgtgta 354  Q
    ||||||||||| |||  |||||||||||  | |||||||| |||||||||||| ||||||||| |||| | ||| |||||||||||||||| ||| || |    
T  22209545 tttgattactttcacataatttaatttatgaatttgattcgatattcatttttgttgatgcaaactaa-tatttttaatttgcttttttgagattttgca 22209643  T
Q  355 tgtcgatcactctcaatcaccatttaatttgattgtttctacgagcttaattgtaactctaaaagtaataata 427  Q
    |||||| |||||||||||| || ||| ||||||||||| ||  |  |||| | ||||||||||| ||||||||    
T  22209644 tgtcgaccactctcaatcatcacttagtttgattgtttttatcactttaaatataactctaaaattaataata 22209716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 285 - 371
Target Start/End: Complemental strand, 8191982 - 8191896
Alignment:
Q  285 actttgattccatattcatttttattgatgcaagctaaatgtttctaatttgcttttttgatattgtgtatgtcgatcactctcaat 371  Q
    ||||||||||||||||||||||| || |||||| |||||||||| ||| || ||| ||| | |||||| |||||||||| |||||||    
T  8191982 actttgattccatattcatttttgttaatgcaaactaaatgtttttaactttcttctttaaaattgtgcatgtcgatcattctcaat 8191896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 292 - 394
Target Start/End: Original strand, 54421200 - 54421302
Alignment:
Q  292 ttccatattcatttttattgatgcaagctaaatgtttctaatttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaatttgattgtt 391  Q
    |||||||||||||||| |||||| || |||||||||  || ||||||| ||||| |||||| |||||||| |||||||||   || ||| ||||||||||    
T  54421200 ttccatattcatttttgttgatgtaaactaaatgttgttactttgcttctttgagattgtgcatgtcgataactctcaattgtcacttagtttgattgtt 54421299  T
Q  392 tct 394  Q
    |||    
T  54421300 tct 54421302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 287 - 427
Target Start/End: Original strand, 42935761 - 42935897
Alignment:
Q  287 tttgattccatattcatttttattgatgcaagctaaatgtttctaatttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaatttga 386  Q
    |||| |||||||| ||||||| |  |||||| | ||||||||||||||| ||||||||| ||| ||||||| |  ||||||||||||  | |||||||||    
T  42935761 tttggttccatatgcattttttt--atgcaaacaaaatgtttctaattttcttttttgagattttgtatgttg-gcactctcaatca-tacttaatttga 42935856  T
Q  387 ttgtttctacgagcttaattgtaactctaaaagtaataata 427  Q
    |||| |||| ||  |||| | ||||||||||| ||||||||    
T  42935857 ttgtgtctatgactttaaatataactctaaaattaataata 42935897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 427
Target Start/End: Original strand, 19878503 - 19878583
Alignment:
Q  347 attgtgtatgtcgatcactctcaatcaccatttaatttgattgtttctacgagcttaattgtaactctaaaagtaataata 427  Q
    |||||| |||||||||||||||||||| || ||| ||||||  |||||| ||| || | ||||||| |||  |||||||||    
T  19878503 attgtgcatgtcgatcactctcaatcatcacttagtttgataatttctatgagtttgaatgtaactttaagggtaataata 19878583  T

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Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 295 - 427
Target Start/End: Original strand, 19403527 - 19403657
Alignment:
Q  295 catattcatttttattgatgcaagctaaatgtttctaatttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaatttgattgtttct 394  Q
    |||||| |||||| ||||||| | |||||||||  |||||||||| ||||| |||||| ||||| ||||||||||||   || ||| |||||||||||||    
T  19403527 catattaatttttgttgatgctaactaaatgttgttaatttgcttctttgagattgtgcatgtcaatcactctcaattgtcacttagtttgattgtttct 19403626  T
Q  395 acgagcttaattgtaactctaaaagtaataata 427  Q
      ||| |||| |||||||||| || ||||||||    
T  19403627 --gagtttaaatgtaactctacaattaataata 19403657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 295 - 415
Target Start/End: Complemental strand, 15107579 - 15107461
Alignment:
Q  295 catattcatttttattgatgcaagctaaatgtttctaatttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaatttgattgtttct 394  Q
    |||||||||| || ||||||||  |||||||||  |||||||||| ||||| |||||| |||||||||| |||||||   || ||| |||||||||||||    
T  15107579 catattcattattgttgatgcagactaaatgttgttaatttgcttctttgagattgtgcatgtcgatcattctcaattgtcacttagtttgattgtttct 15107480  T
Q  395 acgagcttaattgtaactcta 415  Q
      ||| |||| ||||||||||    
T  15107479 --gagtttaaatgtaactcta 15107461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 230 - 394
Target Start/End: Original strand, 3622075 - 3622240
Alignment:
Q  230 tcatttttattttgttgatt-ccacctttgattacttccactaaatttaatttacaactttgattccatattcatttttattgatgcaagctaaatgttt 328  Q
    ||||||||||| |||| ||| |||||||||||||||| ||| |||| || ||||  | ||||||||| |||| |||||| |||||||||   |||| |||    
T  3622075 tcatttttattgtgtttatttccacctttgattactttcacaaaatgtagtttatgagtttgattccgtatttatttttgttgatgcaaatgaaattttt 3622174  T
Q  329 ctaa-tttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaatttgattgtttct 394  Q
     ||| |||  |||||||| ||| || |||||||| |||||||||||  | ||| |||||||||||||    
T  3622175 ttaattttttttttttgagattttgcatgtcgat-actctcaatcattagttagtttgattgtttct 3622240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 267
Target Start/End: Complemental strand, 34355370 - 34355316
Alignment:
Q  214 tgttctctatggtttatcatttttattttgttgat-tccacctttgattacttcc 267  Q
    ||||||||||| ||||||||||| ||| | ||||| |||||||||||||||||||    
T  34355370 tgttctctatgatttatcattttaattgtattgatatccacctttgattacttcc 34355316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 285 - 371
Target Start/End: Complemental strand, 18557 - 18471
Alignment:
Q  285 actttgattccatattcatttttattgatgcaagctaaatgtttctaatttgcttttttgatattgtgtatgtcgatcactctcaat 371  Q
    ||||||||||||||||||||||| || |||||| |||||||||| ||| || ||| ||| | |||||| |||||||||| |||||||    
T  18557 actttgattccatattcatttttgttaatgcaaactaaatgtttttaactttcttctttaaaattgtgcatgtcgatcattctcaat 18471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 230 - 427
Target Start/End: Original strand, 44323 - 44519
Alignment:
Q  230 tcatttttattttgttgatt-ccacctttgattacttccactaaatttaatttacaactttgattccatattcatttttattgatgcaagctaaatgttt 328  Q
    ||||||||||| |||| ||| |||| ||||||||||| |||   ||||||||||  | ||||||| | ||||||||||| |||||||||    |||||||    
T  44323 tcatttttattgtgtttatttccacgtttgattactttcacattatttaatttatgagtttgatttcctattcatttttgttgatgcaaaaagaatgttt 44422  T
Q  329 ctaatttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaatttgattgtttctacgagcttaattgtaactctaaaagtaataata 427  Q
     | |||| || |||||  ||| ||||||| || ||||||||||||  | ||||||||||||||||||  |  || | ||||||||||||| ||||||||    
T  44423 atgattttctcttttgtgattttgtatgttga-cactctcaatca-tacttaatttgattgtttctataacttttaatgtaactctaaaattaataata 44519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 19896 - 19843
Alignment:
Q  214 tgttctctatggtttatcatttttattttgttgat-tccacctttgattacttc 266  Q
    ||||||||| | ||||||||||| ||| ||||||| ||||||||||||||||||    
T  19896 tgttctctacgatttatcattttaattgtgttgatatccacctttgattacttc 19843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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