View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15598_low_21 (Length: 337)

Name: NF15598_low_21
Description: NF15598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15598_low_21
NF15598_low_21
[»] chr8 (8 HSPs)
chr8 (9-319)||(44312137-44312435)
chr8 (60-319)||(44301285-44301548)
chr8 (123-319)||(43896006-43896202)
chr8 (123-319)||(44306459-44306656)
chr8 (134-314)||(43895493-43895668)
chr8 (134-314)||(44305917-44306092)
chr8 (61-105)||(43895902-43895946)
chr8 (61-105)||(44306353-44306397)
[»] chr3 (1 HSPs)
chr3 (60-319)||(4084057-4084314)
[»] chr6 (1 HSPs)
chr6 (186-314)||(8159180-8159311)
[»] chr4 (1 HSPs)
chr4 (134-314)||(18701618-18701804)
[»] chr5 (1 HSPs)
chr5 (159-310)||(35856905-35857052)
[»] chr7 (1 HSPs)
chr7 (270-310)||(15040308-15040348)


Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 9 - 319
Target Start/End: Original strand, 44312137 - 44312435
Alignment:
Q  9 agcagagataggatcaactgttaaaaatgcagaacacaacnnnnnnnnngagagtaactactaactaatcagagatcaataattaagcaacaaattcacc 108  Q
    |||||||||||||||||||||||||  |||||||||||||         |||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  44312137 agcagagataggatcaactgttaaa--tgcagaacacaacaaaaaaaatgag--taactactaactaatcagagatcaataattaagcaacaaattcacc 44312232  T
Q  109 atnnnnnnntaagttataaataagcaacaaaccaaagcaaagttaacaagccaaaccaactggcgaagtaggatcaattctcttgaatgaatccattcac 208  Q
    ||       |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44312233 ataaaaaaataagttataaataagcaacaaaccaaagcatagttaacaagccaaaccaactggcgaagtaggatcaattctcttgaatgaatccattcac 44312332  T
Q  209 accatttgaaaatttctctccagaaacttttgagaccgattaagcaggaacatcggcagaggtcattatatatctaacagacccatcagtaaaagtatct 308  Q
    |||||||||||||||||||||||||||||||||||| ||        ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  44312333 accatttgaaaatttctctccagaaacttttgagacgga--------gaacatcggcagaagtcattatatatctaacagacccatcagtaaaagtatct 44312424  T

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Target: chr8; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 60 - 319
Target Start/End: Original strand, 44301285 - 44301548
Alignment:
Q  60 gagtaactactaactaatcagagatcaataattaagcaacaaattcaccatnnnnnnntaagttataaataagcaacaaaccaaagcaaagttaacaagc 159  Q
    |||||||||||||||||||||||||||||||||||||| || ||| |||||       |||||||||||||||||||||| || ||||||| ||||||||    
T  44301285 gagtaactactaactaatcagagatcaataattaagcagcagatttaccataaaaaa-taagttataaataagcaacaaaacatagcaaagctaacaagc 44301383  T
Q  160 caaaccaactggcgaagtaggatcaattctc-----ttgaatgaatccattcacaccatttgaaaatttctctccagaaacttttgagaccgattaagca 254  Q
    ||||| ||||||  ||||||||||| ||| |     | ||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||| |||| |    
T  44301384 caaacaaactgggtaagtaggatcatttcactggaatggaatgaatcaattcacaccatttgaaaatttctctccagaatcttttgacaccgaataagta 44301483  T
Q  255 ggaacatcggcagaggtcattatatatctaacagacccatcagtaaaagtatctccagatctaag 319  Q
    |||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||| ||||    
T  44301484 ggaacatcggcagaagacattgtatatctaacagacccatcagtaaaagtatctccagatttaag 44301548  T

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Target: chr8; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 123 - 319
Target Start/End: Original strand, 43896006 - 43896202
Alignment:
Q  123 tataaataagcaacaaaccaaagcaaagttaacaagccaaaccaactggcgaagtaggatcaattctcttgaatgaatccattcacaccatttgaaaatt 222  Q
    |||||||||||||||||||| ||||||| |||||||||||| |||||||  ||||||||||| ||| || |||||||||||| |||||||||||||||||    
T  43896006 tataaataagcaacaaaccatagcaaagctaacaagccaaagcaactgggtaagtaggatcacttccctagaatgaatccatccacaccatttgaaaatt 43896105  T
Q  223 tctctccagaaacttttgagaccgattaagcaggaacatcggcagaggtcattatatatctaacagacccatcagtaaaagtatctccagatctaag 319  Q
    ||||||||||| ||| |||||  || ||| |||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||| ||||    
T  43896106 tctctccagaatcttatgagatagaataatcaggaacatcggcagaagtcattgtatatctaacagacccatcagtgaaagtatctccagatttaag 43896202  T

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Target: chr8; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 123 - 319
Target Start/End: Original strand, 44306459 - 44306656
Alignment:
Q  123 tataaataagcaacaaaccaaagcaaagttaacaagccaaaccaactggcgaagtaggatcaattctcttgaatgaatccattcacaccatttg-aaaat 221  Q
    |||||||||||||||||||| ||||||| |||||||||||| |||||||  ||||||||||| ||| || |||||||||||||||||||||||| ||||     
T  44306459 tataaataagcaacaaaccatagcaaagctaacaagccaaagcaactgggtaagtaggatcatttccctagaatgaatccattcacaccatttgaaaaaa 44306558  T
Q  222 ttctctccagaaacttttgagaccgattaagcaggaacatcggcagaggtcattatatatctaacagacccatcagtaaaagtatctccagatctaag 319  Q
     ||||||||||| ||| |||||| || |||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  44306559 ctctctccagaatcttatgagacagaataagtaggaacatcggcagaagtcattgtatatctaacagacccatcagtaaaagtatctccagatttaag 44306656  T

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Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 134 - 314
Target Start/End: Original strand, 43895493 - 43895668
Alignment:
Q  134 aacaaaccaaagcaaagttaacaagccaaaccaactggcgaagtaggatcaattctcttgaatgaatccattcacaccatttgaaaatttctctccagaa 233  Q
    ||||| |||||| |||| ||| ||||||||||||||||  ||||||||||  |||| |||||   | ||||||| | || ||||||||| | ||||||||    
T  43895493 aacaatccaaag-aaagctaataagccaaaccaactgggaaagtaggatcctttct-ttgaa---aaccattcaaagcagttgaaaattgccctccagaa 43895587  T
Q  234 acttttgagaccgattaagcaggaacatcggcagaggtcattatatatctaacagacccatcagtaaaagtatctccagat 314  Q
     |||||||||||||  ||| | ||| || | |||||||||||  |||||||||||||||||||| ||||||||||||||||    
T  43895588 tcttttgagaccgaacaagtaagaatattgacagaggtcattgaatatctaacagacccatcagcaaaagtatctccagat 43895668  T

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Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 134 - 314
Target Start/End: Original strand, 44305917 - 44306092
Alignment:
Q  134 aacaaaccaaagcaaagttaacaagccaaaccaactggcgaagtaggatcaattctcttgaatgaatccattcacaccatttgaaaatttctctccagaa 233  Q
    ||||| |||||| |||| ||||||||||||||||||||  ||||||||||  |||| |||||   | ||||||| | || ||||||||| | ||||||||    
T  44305917 aacaatccaaag-aaagctaacaagccaaaccaactgggaaagtaggatcctttct-ttgaa---aaccattcaaagcacttgaaaattgccctccagaa 44306011  T
Q  234 acttttgagaccgattaagcaggaacatcggcagaggtcattatatatctaacagacccatcagtaaaagtatctccagat 314  Q
     |||||||||||||  ||| | ||| || | |||||||||||  ||||||||| |||||||||| ||||||||||||||||    
T  44306012 tcttttgagaccgaacaagtaagaatattgacagaggtcattgaatatctaacggacccatcagcaaaagtatctccagat 44306092  T

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Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 43895902 - 43895946
Alignment:
Q  61 agtaactactaactaatcagagatcaataattaagcaacaaattc 105  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  43895902 agtaactactaaataatcagagatcaataattaagcaacaaattc 43895946  T

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Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 44306353 - 44306397
Alignment:
Q  61 agtaactactaactaatcagagatcaataattaagcaacaaattc 105  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  44306353 agtaactactaaataatcagagatcaataattaagcaacaaattc 44306397  T

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Target: chr3 (Bit Score: 166; Significance: 8e-89; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 60 - 319
Target Start/End: Original strand, 4084057 - 4084314
Alignment:
Q  60 gagtaactactaactaatcagagatcaataattaagcaacaaattcaccatnnnnnnntaagttataaataagcaacaaaccaaagcaaagttaacaagc 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||| || |||| ||||||||    
T  4084057 gagtaactactaactaatcagagatcaataattaagcaacaaattcaccataaaaaa-taagttataaataagcaacaaaccatagtaaagctaacaagc 4084155  T
Q  160 caaaccaactggcgaagtaggatcaattctcttgaatgaatccattcacaccatttgaaaatttctctccagaaacttttgagaccgattaagcaggaac 259  Q
    ||||||||||||  ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||| | ||||||||||| |||||||||||    
T  4084156 caaaccaactggt-aagtaggatcatttctctggaatgaatccattcacaccatttgaaaatttctctcctgaatcctttgagaccgaataagcaggaac 4084254  T
Q  260 atcggcagaggtcattatatatctaacagacccatcagtaaaagtatctccagatctaag 319  Q
    ||||||||| |||||| ||||||||| |||||| ||||||||||||||||||||| ||||    
T  4084255 atcggcagaagtcattgtatatctaatagacccgtcagtaaaagtatctccagatttaag 4084314  T

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Target: chr6 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 186 - 314
Target Start/End: Complemental strand, 8159311 - 8159180
Alignment:
Q  186 ttctcttgaatgaatccattcacaccatttgaaaatttctctccagaaacttttgagaccgattaagcaggaacat---cggcagaggtcattatatatc 282  Q
    |||||| ||||||||| |||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||   | ||||| |||||||||||||    
T  8159311 ttctctagaatgaatcaattcacaccatttgaaaatttctctccacaatcttttgagaccgaataagcaggaacatcagcagcagaagtcattatatatc 8159212  T
Q  283 taacagacccatcagtaaaagtatctccagat 314  Q
    ||||||||||||| ||||||||||||||||||    
T  8159211 taacagacccatcggtaaaagtatctccagat 8159180  T

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Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 134 - 314
Target Start/End: Original strand, 18701618 - 18701804
Alignment:
Q  134 aacaaaccaaagcaaagttaacaagccaaaccaactggcgaagtaggatcaat---tctcttgaatgaatccattcacaccatttgaaaatttctctcca 230  Q
    |||||||||  |||||| ||| || |||||||||| ||  ||||||||||| |   ||||| ||||||||| ||||||||||||||||||| | |  ||     
T  18701618 aacaaaccattgcaaagctaataaaccaaaccaacagggtaagtaggatcattatttctctagaatgaatcaattcacaccatttgaaaatgtatgcccg 18701717  T
Q  231 gaaacttttgagaccgattaagcaggaacatcggcagaggtcattatatatctaacagacccat---cagtaaaagtatctccagat 314  Q
    ||| ||||||||||||| |||||||||||||| ||||| |||||| ||||||||||||||||||   | ||||||||||||||||||    
T  18701718 gaatcttttgagaccgaataagcaggaacatcagcagaagtcattgtatatctaacagacccattggcggtaaaagtatctccagat 18701804  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 310
Target Start/End: Complemental strand, 35857052 - 35856905
Alignment:
Q  159 ccaaaccaactggcgaagtaggatcaattctcttgaatgaatccattcacaccatttgaaaatttctctccagaaacttttgagaccgattaagcaggaa 258  Q
    |||||||||||||  ||||||||||| ||||||  |||    ||||||||| |||||||| ||| ||| | |||| ||||||||||||| ||| || |||    
T  35857052 ccaaaccaactgggtaagtaggatcatttctctgtaat----ccattcacaacatttgaagattgctcgctagaatcttttgagaccgaataatcaagaa 35856957  T
Q  259 catcggcagaggtcattatatatctaacagacccatcagtaaaagtatctcc 310  Q
    ||| |||||| |||||     |||||||||||||||||||||| || |||||    
T  35856956 cattggcagaagtcatagcccatctaacagacccatcagtaaatgtttctcc 35856905  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 310
Target Start/End: Original strand, 15040308 - 15040348
Alignment:
Q  270 gtcattatatatctaacagacccatcagtaaaagtatctcc 310  Q
    |||||| ||||| ||||||||||||||||||||||||||||    
T  15040308 gtcattgtatatttaacagacccatcagtaaaagtatctcc 15040348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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