View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15598_low_23 (Length: 328)
Name: NF15598_low_23
Description: NF15598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15598_low_23 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 307
Target Start/End: Original strand, 32525737 - 32526021
Alignment:
| Q |
19 |
atgaagcaaccatcactactttggaaaataccaaagatttctcaaaaatcgctttggcagaattgcttaatgcattgaaggcacaagaacagaggagatt |
118 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32525737 |
atgaagcaaccatcactactttggagaataccaaagatttctcaaaaatttcttttgcagaattgcttaatgcattgaaggcacaagaacagaggagatt |
32525836 |
T |
|
| Q |
119 |
gacgagagaggaaacaacacttgaaggagcattagcagccaagcagtagaatgtgggttcaacatcagccaatgcaacagaaaagaatgtaattcgaaga |
218 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32525837 |
gatgagagaggaaacaacacttgaaggagcattagcagccaagcagcagaatgtgggttcaacatcagccaatgcaacagaaaagaatgtaattcgaaga |
32525936 |
T |
|
| Q |
219 |
aaatcttatcctccatgtcaacactgtggaaagaaaggtcatccacgtgccctttagatgttggagaagacctgatgctaagtgtacca |
307 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
32525937 |
aaatcttatcctccatgtcaacactatggaaagaaaggtcatcca----cccttaagatgttggagaagacctgatgctaagtgtacca |
32526021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 307
Target Start/End: Complemental strand, 2797647 - 2797363
Alignment:
| Q |
19 |
atgaagcaaccatcactactttggaaaataccaaagatttctcaaaaatcgctttggcagaattgcttaatgcattgaaggcacaagaacagaggagatt |
118 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
2797647 |
atgaagcaaccatcactactttggagaataccaaagatttctcaaaaatttctttggcagaattgcttaatgcattgaaggcactagaacagagaagatt |
2797548 |
T |
|
| Q |
119 |
gacgagagaggaaacaacacttgaaggagcattagcagccaagcagtagaatgtgggttcaacatcagccaatgcaacagaaaagaatgtaattcgaaga |
218 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2797547 |
gatgagagaggaaacaacacttgaaggagcattagcagccaagcagcataatgtgggctcaacatcagccaatgcaacagaaaagaatgtaattcgaaga |
2797448 |
T |
|
| Q |
219 |
aaatcttatcctccatgtcaacactgtggaaagaaaggtcatccacgtgccctttagatgttggagaagacctgatgctaagtgtacca |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2797447 |
aaatcttatcctccatgtcaacactgtggaaagaaaggtcatcca----ccctttagatgttggagaagacctgatgctaagtgtacca |
2797363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 307
Target Start/End: Complemental strand, 6838842 - 6838558
Alignment:
| Q |
19 |
atgaagcaaccatcactactttggaaaataccaaagatttctcaaaaatcgctttggcagaattgcttaatgcattgaaggcacaagaacagaggagatt |
118 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6838842 |
atgaagcaaccatcactactttggagaataccaaagatttctcaaaaatttcttttgcagaattgcttaatgcattgaaggcacaagaacagagaagatt |
6838743 |
T |
|
| Q |
119 |
gacgagagaggaaacaacacttgaaggagcattagcagccaagcagtagaatgtgggttcaacatcagccaatgcaacagaaaagaatgtaattcgaaga |
218 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
6838742 |
gatgagagaggaaacaacacttgaaggagcattagcagccatgtagcagaatgtgggttcaacatcagccaatgcaacagaaaagaatgcaattcgaaga |
6838643 |
T |
|
| Q |
219 |
aaatcttatcctccatgtcaacactgtggaaagaaaggtcatccacgtgccctttagatgttggagaagacctgatgctaagtgtacca |
307 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6838642 |
aaatcttatcctccacgtcaacactgtggaaagaaaggtcatcca----ccctttagatgttggagaagacctgatgctaagtgtacca |
6838558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 163
Target Start/End: Complemental strand, 8977619 - 8977475
Alignment:
| Q |
19 |
atgaagcaaccatcactactttggaaaataccaaagatttctcaaaaatcgctttggcagaattgcttaatgcattgaaggcacaagaacagaggagatt |
118 |
Q |
| |
|
|||||| ||||||||||||||| || ||||||| |||||||| ||||| |||||||||||||||||||||||||||||| |||||||| || ||||| |
|
|
| T |
8977619 |
atgaagtaaccatcactactttagagaataccagagatttctaaaaaaaatctttggcagaattgcttaatgcattgaaggggcaagaacatagaagatt |
8977520 |
T |
|
| Q |
119 |
gacgagagaggaaacaacacttgaaggagcattagcagccaagca |
163 |
Q |
| |
|
|| || ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8977519 |
gatgaaagaagaaacaacacttgaaggagcattagcagccaagca |
8977475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 177 - 302
Target Start/End: Complemental strand, 8977425 - 8977304
Alignment:
| Q |
177 |
tcaacatcagccaatgcaacagaaaagaatgtaattcgaagaaaatcttatcctccatgtcaacactgtggaaagaaaggtcatccacgtgccctttaga |
276 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||| ||||||||||||| | |||| |||||| |||||||| |||||||||||| ||||||||| |
|
|
| T |
8977425 |
tcaaaatcagccaatgcaacagaaaagaatgaaattcaaagaaaatcttatacgccatttcaacattgtggaaaaaaaggtcatcca----ccctttaga |
8977330 |
T |
|
| Q |
277 |
tgttggagaagacctgatgctaagtg |
302 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
8977329 |
tgttggagaagacctgatgctaagtg |
8977304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 177 - 263
Target Start/End: Complemental strand, 28600495 - 28600409
Alignment:
| Q |
177 |
tcaacatcagccaatgcaacagaaaagaatgtaattcgaagaaaatcttatcctccatgtcaacactgtggaaagaaaggtcatcca |
263 |
Q |
| |
|
||||||||||| || |||| ||||||||||| |||| |||||||||||||||| || | ||| | |||||||||||| |||||||| |
|
|
| T |
28600495 |
tcaacatcagcgaaagcaaaagaaaagaatgaaatttgaagaaaatcttatccacctttccaatattgtggaaagaaatgtcatcca |
28600409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 300
Target Start/End: Original strand, 6385041 - 6385152
Alignment:
| Q |
183 |
tcagccaatgcaacagaaaagaatgtaattcgaagaaaatcttatcctccatgtcaacactgtggaaagaaaggtcatccacgtgccctttagatgttgg |
282 |
Q |
| |
|
|||||||||| || |||||| |||| ||||||||||||||||| | ||| |||| |||| ||||||||||||||| ||| || |||||| ||||| |
|
|
| T |
6385041 |
tcagccaatgtaaaagaaaataatgaaattcgaagaaaatcttcacttccttgtctacac--tggaaagaaaggtcaccca----ccatttagaggttgg |
6385134 |
T |
|
| Q |
283 |
agaagacctgatgctaag |
300 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
6385135 |
agaagacctgatgttaag |
6385152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 163
Target Start/End: Original strand, 6384839 - 6384981
Alignment:
| Q |
21 |
gaagcaaccatcactactttggaaaataccaaagatttctcaaaaatcgctttggcagaattgcttaatgcattgaaggcacaagaacagaggagattga |
120 |
Q |
| |
|
|||| |||||||||||| || | |||||||| |||||||||||| ||||| || ||| |||||||||||||||| |||||||| ||| ||| | |
|
|
| T |
6384839 |
gaagtaaccatcactacgtttaagaataccaagaatttctcaaaaagttctttgacaaaatagcttaatgcattgaagacacaagaatagataagacgta |
6384938 |
T |
|
| Q |
121 |
cgagagaggaaacaacacttgaaggagcattagcagccaagca |
163 |
Q |
| |
|
|||||||||||||||| |||| ||| |||||| ||||||| |
|
|
| T |
6384939 |
tgagagaggaaacaacatgagaagcagctttagcaaccaagca |
6384981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 177 - 302
Target Start/End: Original strand, 2802958 - 2803080
Alignment:
| Q |
177 |
tcaacatcagccaatgcaacaga-aaagaatgtaattcgaagaaaatcttatcctccatgtcaacactgtggaaagaaaggtcatccacgtgccctttag |
275 |
Q |
| |
|
||||||||||||||||||| | | |||||||| ||||||| ||||||||||||| || |||||||| |||||||||||||||||| || || |||| |
|
|
| T |
2802958 |
tcaacatcagccaatgcaaaacataaagaatgaaattcgatgaaaatcttatccaccttgtcaacattgtggaaagaaaggtcattca----ccatttat |
2803053 |
T |
|
| Q |
276 |
atgttggagaagacctgatgctaagtg |
302 |
Q |
| |
|
| | ||||||||||||||||||||||| |
|
|
| T |
2803054 |
agggtggagaagacctgatgctaagtg |
2803080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 49 - 137
Target Start/End: Original strand, 2802795 - 2802883
Alignment:
| Q |
49 |
ccaaagatttctcaaaaatcgctttggcagaattgcttaatgcattgaaggcacaagaacagaggagattgacgagagaggaaacaaca |
137 |
Q |
| |
|
|||| |||||||||||||| |||||| |||||||||||||||||||||||| |||||||| | ||||||| ||||||||| |||||| |
|
|
| T |
2802795 |
ccaaggatttctcaaaaatttctttggtagaattgcttaatgcattgaaggcgcaagaacatggaagattgatgagagaggacacaaca |
2802883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 79 - 164
Target Start/End: Complemental strand, 20083345 - 20083260
Alignment:
| Q |
79 |
aattgcttaatgcattgaaggcacaagaacagaggagattgacgagagaggaaacaacacttgaaggagcattagcagccaagcag |
164 |
Q |
| |
|
||||||||| |||||| ||||| |||||| |||| ||||| | |||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
20083345 |
aattgcttattgcattaaaggcgcaagaagagagaagattaatgagagaggaaacaacatttgaaggagcattagcatccaagcag |
20083260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 305
Target Start/End: Complemental strand, 20083217 - 20083088
Alignment:
| Q |
171 |
gtgggttcaacatcagccaatgcaacagaaaagaatgtaattcgaagaaaatcttatcctccatgtcaacactgtggaaagaaaggtcatccacgtgccc |
270 |
Q |
| |
|
||||| || |||||||||| | ||| ||||||||||| ||||||||| |||| |||||||| ||| ||||||| || ||||||||| || || ||| |
|
|
| T |
20083217 |
gtgggatcgacatcagccactacaagagaaaagaatgaaattcgaag-aaattgtatcctccctgttaacactgagggaagaaaggtaattca----ccc |
20083123 |
T |
|
| Q |
271 |
tttagatgttggagaagacctgatgctaagtgtac |
305 |
Q |
| |
|
|||||||||||| || ||| | ||||||||||||| |
|
|
| T |
20083122 |
tttagatgttggggatgacataatgctaagtgtac |
20083088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 13812434 - 13812490
Alignment:
| Q |
185 |
agccaatgcaacagaaaagaatgtaattcgaagaaaatcttatcctccatgtcaaca |
241 |
Q |
| |
|
||||||||||| ||||||||||| ||||| || |||||||||||| || |||||||| |
|
|
| T |
13812434 |
agccaatgcaaaagaaaagaatgaaattcaaaaaaaatcttatccgccttgtcaaca |
13812490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University