View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15598_low_24 (Length: 321)
Name: NF15598_low_24
Description: NF15598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15598_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 35205284 - 35205462
Alignment:
| Q |
1 |
gacttatgttggacaagagagtgaaacaacaaaacacgtgacacaaggggtgtgttataagaaattaaatgcaatagcagtaaatcattatcaggtatag |
100 |
Q |
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| T |
35205284 |
gacttatgttggacaagagagtgaaacaacaaaacacgtgacacagggggtgtgttataagaaattaaatgcaatagcagtaaatcattatcaggtatag |
35205383 |
T |
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| Q |
101 |
aaataaaataactcacataatcgccatggccgggtgcacttgaattggtttgatcagaccaagaagaatattcaatatatgtt |
183 |
Q |
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| T |
35205384 |
aaataaaataactcacataatcgccat----gggtgcacttgaattggtttgatcagaccaagaagaatattcaatatatgtt |
35205462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 191 - 299
Target Start/End: Original strand, 35206010 - 35206118
Alignment:
| Q |
191 |
catgataaaaacaaaaggagttcctcagcacacaaacacttggtgttacatatgccaccttcttcgaattcaaagggggcatcaactgtgtgtgcgtctc |
290 |
Q |
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| T |
35206010 |
catgataaaaacaaaaggagttcctcagcacacaaatacttggtgttacatatgccacctacttcgaattcaaagggggcatcaactgtgtgtgcgtctc |
35206109 |
T |
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| Q |
291 |
cgtacctag |
299 |
Q |
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| T |
35206110 |
cgtacctag |
35206118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 20456485 - 20456445
Alignment:
| Q |
192 |
atgataaaaacaaaaggagttcctcagcacacaaacacttg |
232 |
Q |
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| T |
20456485 |
atgataaaaacaaaaggagttcatcaacacacaaacacttg |
20456445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 7306188 - 7306224
Alignment:
| Q |
138 |
acttgaattggtttgatcagaccaagaagaatattca |
174 |
Q |
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| T |
7306188 |
acttgaattggtgtgatcagagcaagaagaatattca |
7306224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 21218796 - 21218832
Alignment:
| Q |
193 |
tgataaaaacaaaaggagttcctcagcacacaaacac |
229 |
Q |
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| T |
21218796 |
tgataaaaacaaaaggagttcatcaacacacaaacac |
21218832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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