View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15598_low_25 (Length: 316)
Name: NF15598_low_25
Description: NF15598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15598_low_25 |
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| [»] scaffold1118 (2 HSPs) |
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| [»] scaffold0902 (1 HSPs) |
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Alignment Details
Target: scaffold1118 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: scaffold1118
Description:
Target: scaffold1118; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 74 - 306
Target Start/End: Complemental strand, 1184 - 940
Alignment:
| Q |
74 |
tatgagaaatgagtttgttttctatcttttatttcccataacatggtatcattgaggctctctcatttccatggaga------gttag----tagttaca |
163 |
Q |
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| T |
1184 |
tatgagaaatgagtttgtattctatcttttaattcccatgacatggtatcattgagcctctctcatttccacggagaaagttcgttagaagttagttaca |
1085 |
T |
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| Q |
164 |
agttcattcttcattaattttccttgaatcttcattggttttccttgaaccttcatcaattttcttcgtggtttttcctgtgttttcc-ttgattcttca |
262 |
Q |
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| T |
1084 |
aattcattcttcatcaattttccttgaatcttcatcgtttttccttgaacgttcgtcaattttctttgcaggttttcctgttttttcctttgattcgtca |
985 |
T |
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| Q |
263 |
cagattttcttg-atattgctgcatcttcttttattttgtctctg |
306 |
Q |
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| T |
984 |
ccgattttcttgcacattgttgcaacttcttttattttctctctg |
940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1118; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 1274 - 1222
Alignment:
| Q |
17 |
aattagcttactccacttcattagcatgtaattaggtgttgtgtatctcatgc |
69 |
Q |
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| T |
1274 |
aattagtttaatccacttcattagcatgtaattaggtgttgtgtatctaatgc |
1222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0902
Description:
Target: scaffold0902; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 1162 - 1118
Alignment:
| Q |
12 |
taagaaattagcttactccacttcattagcatgtaattaggtgtt |
56 |
Q |
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| T |
1162 |
taagaaattagcttactccacttcattagcatgtaattaggtgtt |
1118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 102
Target Start/End: Original strand, 40904324 - 40904352
Alignment:
| Q |
74 |
tatgagaaatgagtttgttttctatcttt |
102 |
Q |
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| T |
40904324 |
tatgagaaatgagtttgttttctatcttt |
40904352 |
T |
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