View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15598_low_28 (Length: 268)
Name: NF15598_low_28
Description: NF15598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15598_low_28 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 3417202 - 3416934
Alignment:
| Q |
1 |
ttatttttctttcattttcttggatattcaacgtatatatatttgcatctatacaaatatgtattttttattaatttaagaaatgacaagaactatgcta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3417202 |
ttatttttctttcattttcttggatattcaacgtatatatatttgcatctatacaaatatgtattttttattaatttaagaaatgacaagaactatgcta |
3417103 |
T |
|
| Q |
101 |
cttggtttcctctacctgcgtcaaaactaacgtagatgattttcattttggtactcacctgattttcattttggttctcagcagatgatttttcttgcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3417102 |
cttggtttcctctacctgcgtcaaaactaacgcagatgattttcattttggtactcacctgattttcattttggttctcagcagatgatttttcttgcat |
3417003 |
T |
|
| Q |
201 |
cattaagacctttttgcgaa-ttaaagtgtgaattttggattgcaatattgtagagtttaaaatattaa |
268 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3417002 |
cattaagacctttttgcgaattttaagtgtgaattttggattgcaatattgtagagtttaaaatattaa |
3416934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 18829596 - 18829341
Alignment:
| Q |
1 |
ttatttttctttcattttcttggatattcaacgtatatatatttgcatctatacaaatatgtattttttattaatttaagaaatgacaagaactatgcta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||| |
|
|
| T |
18829596 |
ttatttttctttcattttcttggatattcaacgtatatgtatttgcatctatacaaatatgtattttt-attaatttaagaaatgataaaaactatgcta |
18829498 |
T |
|
| Q |
101 |
cttggtttcctctacctgcgtcaaaactaacgtagatgattttcattttggtactcacctgattttcattttggttctcagcagatgatttttcttgcat |
200 |
Q |
| |
|
|||||||||||||||||| | ||||||||| | |||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
18829497 |
cttggtttcctctacctgtg-caaaactaatgcagatgattttcattttggtactcagctgatttttattttggttttcagcagatgatttttcttgcat |
18829399 |
T |
|
| Q |
201 |
cattaagacctttttgcgaa-ttaaagtgtgaattttggattgcaatattgtagagtt |
257 |
Q |
| |
|
|||||||||||||| ||| || |||||| |||||||||||| |||||||||||||| |
|
|
| T |
18829398 |
tattaagacctttttatgaattttaagtgtaaattttggattgtaatattgtagagtt |
18829341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 22022502 - 22022723
Alignment:
| Q |
1 |
ttatttttctttcattttcttggatattcaacgtatatatatttgcatctatacaaatatgtattttttattaatttaagaaatgacaagaactatgcta |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
22022502 |
ttattttcctttcattttcttggatattcaacgtgtatatatttgcatctatacaaacatgtgtttt-tattaatttaagaaatgacaagaactatgcta |
22022600 |
T |
|
| Q |
101 |
cttggtttcctctacctgcgtcaaaactaacgtagatgattttcattttggtactcacctgattttca-ttttggttctcagcagatgatttttcttgca |
199 |
Q |
| |
|
||| ||||||||||| |||||||||||||| | ||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
22022601 |
cttagtttcctctacttgcgtcaaaactaatgcagatgattttcattttggttctcagctgattttcatttttggttctcagcagatgatttgtcttgca |
22022700 |
T |
|
| Q |
200 |
tcattaagacctttttgcgaatt |
222 |
Q |
| |
|
| ||||||||||||||||||||| |
|
|
| T |
22022701 |
ttattaagacctttttgcgaatt |
22022723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 34 - 157
Target Start/End: Original strand, 44472460 - 44472582
Alignment:
| Q |
34 |
tatatatatttgcatctatacaaatatgtattttttattaatttaagaaatgacaagaactatgctacttggtttcctctacctgcgtcaaaactaacgt |
133 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||| ||| | |
|
|
| T |
44472460 |
tatatatatatgcatctatacaaatatgtatttt-tattaatttaagaaatgacaagaaccatgctacttggtttcctctatctgtgtcaaaattaatgc |
44472558 |
T |
|
| Q |
134 |
agatgattttcattttggtactca |
157 |
Q |
| |
|
||||||||||||||||||| |||| |
|
|
| T |
44472559 |
agatgattttcattttggttctca |
44472582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 181 - 268
Target Start/End: Original strand, 22022737 - 22022825
Alignment:
| Q |
181 |
gcagatgatttttcttgcatcattaagacctttttgcgaa-ttaaagtgtgaattttggattgcaatattgtagagtttaaaatattaa |
268 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
22022737 |
gcagatgatttttcttgcattattaagacctttttgcgaatttttagtgtgaattttggattgtaatattgtagagtttaaagtattaa |
22022825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 4501952 - 4501993
Alignment:
| Q |
1 |
ttatttttctttcattttcttggatattcaacgtatatatat |
42 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4501952 |
ttatttttctttcattttcttggatattcaacgtatatatat |
4501993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 44472403 - 44472444
Alignment:
| Q |
1 |
ttatttttctttcattttcttggatattcaacgtatatatat |
42 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44472403 |
ttatttttctttcattttcttggatattcaacgtatatatat |
44472444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 44472562 - 44472623
Alignment:
| Q |
160 |
tgattttcattttggttctcagcagatgatttttcttgcatcattaagacctttttgcgaatt |
222 |
Q |
| |
|
||||||||||||||||||||| || || |||||| |||||| ||||||||||||||||||||| |
|
|
| T |
44472562 |
tgattttcattttggttctcaacatataattttt-ttgcattattaagacctttttgcgaatt |
44472623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 42 - 268
Target Start/End: Complemental strand, 6507966 - 6507740
Alignment:
| Q |
42 |
tttgcatctatacaaatatgtattttttattaatttaagaaatgacaagaactatgctacttggtttcctctacctgcgtcaaaactaacgtagatgatt |
141 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||| | |||||||| |
|
|
| T |
6507966 |
tttgcatctatacaaatatgtattttt-attaatttaagaaatgacaagaaccatgctacttggtttcctctatttgcgtccaaactaatgcagatgatt |
6507868 |
T |
|
| Q |
142 |
ttcattttggtactcacctgattttcattttggttctcagcagatgatttttcttgcatcattaagacctttttgcgaatt-aaagtgtgaattttggat |
240 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||| || ||||||||||||||| |||||||||||||| | | || ||||||||||||||||| |
|
|
| T |
6507867 |
ttcattttggtactcagctgatttttattttggttctcaacatatgatttttcttgcaatattaagacctttttacaatttctaagtgtgaattttggat |
6507768 |
T |
|
| Q |
241 |
tgcaatattgtagagtttaaaatattaa |
268 |
Q |
| |
|
|| |||||||||||||||||| |||||| |
|
|
| T |
6507767 |
tgtaatattgtagagtttaaagtattaa |
6507740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 6507996 - 6507968
Alignment:
| Q |
1 |
ttatttttctttcattttcttggatattc |
29 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
6507996 |
ttatttttctttcattttcttggatattc |
6507968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 102
Target Start/End: Complemental strand, 26414320 - 26414252
Alignment:
| Q |
33 |
gtatatatatttgcatctatacaaatatgtattttttattaatttaagaaatgacaagaactatgctact |
102 |
Q |
| |
|
|||||||| |||||| || ||||||||||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
26414320 |
gtatatatctttgcactgatgcaaatatgtattttt-attaatttaagaaatgacaagaactatgatact |
26414252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 27989087 - 27989155
Alignment:
| Q |
34 |
tatatatatttgcatctatacaaatatgtattttttattaatttaagaaatgacaagaactatgctactt |
103 |
Q |
| |
|
||||||| || ||||| ||||||||||||||||| |||||||||| | |||| |||||||||||||||| |
|
|
| T |
27989087 |
tatatatcttggcatccatacaaatatgtattttg-attaatttaaaagatgaaaagaactatgctactt |
27989155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 28075620 - 28075688
Alignment:
| Q |
34 |
tatatatatttgcatctatacaaatatgtattttttattaatttaagaaatgacaagaactatgctactt |
103 |
Q |
| |
|
||||||| || ||||| ||||||||||||||||| |||||||||| | |||| |||||||||||||||| |
|
|
| T |
28075620 |
tatatatcttggcatccatacaaatatgtattttg-attaatttaaaagatgaaaagaactatgctactt |
28075688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 27986655 - 27986714
Alignment:
| Q |
34 |
tatatatatttgcatctatacaaatatgtattttttattaatttaagaaatgacaagaact |
94 |
Q |
| |
|
||||||| |||||| |||||||||||||| ||||||||||||||||| || ||||||||| |
|
|
| T |
27986655 |
tatatatctttgcacttatacaaatatgta-tttttattaatttaagacattacaagaact |
27986714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 28073187 - 28073246
Alignment:
| Q |
34 |
tatatatatttgcatctatacaaatatgtattttttattaatttaagaaatgacaagaact |
94 |
Q |
| |
|
||||||| |||||| |||||||||||||| ||||||||||||||||| || ||||||||| |
|
|
| T |
28073187 |
tatatatctttgcacttatacaaatatgta-tttttattaatttaagacattacaagaact |
28073246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University