View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15598_low_29 (Length: 263)
Name: NF15598_low_29
Description: NF15598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15598_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 31974150 - 31973910
Alignment:
| Q |
1 |
atatacaggaagatctcaacatgattgatgctgaatataattatatatagattgcacttacatggtgtcttttcaaactaa-ttaactttgttcaacttg |
99 |
Q |
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| T |
31974150 |
atatacaggaagatctcaacatgattgatgctgaatatagttatatatagattacacttacatggtgtcttttcaaactaaattaactttgttcaacttg |
31974051 |
T |
|
| Q |
100 |
attttctccaactgtcgtagaatttgagttggaagtatgtcc-ttatacaattgatttgtaaaatgagggatgtctttctttataatctttagtcaaact |
198 |
Q |
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||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| | || ||||||| |
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| T |
31974050 |
gttttctccaactgtcatagaatttgagttggaagtatgtcagttataaaattgatttgtaaaatgagggatgtctttctttataatatctaatcaaact |
31973951 |
T |
|
| Q |
199 |
ttatcttagaatttggattaaacttaaatattcaacataag |
239 |
Q |
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|||||||| ||||||||||||||||||||||||| |||||| |
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| T |
31973950 |
ttatcttaaaatttggattaaacttaaatattcatcataag |
31973910 |
T |
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