View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15598_low_3 (Length: 744)
Name: NF15598_low_3
Description: NF15598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15598_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 611; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 611; E-Value: 0
Query Start/End: Original strand, 18 - 736
Target Start/End: Original strand, 1094587 - 1095312
Alignment:
| Q |
18 |
aagaacaatggagaggaagatagtttaatagacaacacgatgaactgatttccatcctccactgtctactactcttaattctcttatattgaatatatat |
117 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1094587 |
aagaacaatggaaaggaagatagtttaatagacaacacgatgaactgatttccatcctccactgtctactactcttaattctcttatattgaatatatat |
1094686 |
T |
|
| Q |
118 |
at--gatgc--------cagactgatggattgaatgtttggtttttcttcttctttttgtaacgttcgggtaatggagatttaacgagacaattaatagt |
207 |
Q |
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|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1094687 |
atatgatgcaagttgcacagactgatggattgaatgtttggtttttcttcttctttttgtaacgttcgggtaatggagatttaacgagacaattaatagt |
1094786 |
T |
|
| Q |
208 |
ggtatttgattgtcattatactcacaaccattgctcattggatcagtagtatcatgattcatgagtacttgctcaagtagagaatttcggttttaattga |
307 |
Q |
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| T |
1094787 |
ggtatttgattgtcattatactcacaaccattgctcattggatcagtagtatcat-------gagtacttgctcaagtagagaatttcggttttaattga |
1094879 |
T |
|
| Q |
308 |
tgcttgcttgcttaattaggttccaaaggtaaatattgcttttgttggagaagtgatgtaggagaatgaggggtgtgaatggagtttatggtttaaattt |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1094880 |
tgcttgcttgcttaattaggttccaaaggtaaatattgcttttgttggagaagtgatgtaggagaatgaggggtgtgaatggagtttatggtttaaattt |
1094979 |
T |
|
| Q |
408 |
ttatcaagtaaatatggggtggatggggttttttatagggtgtaatctagattcatcttgttggaaaaactaatgttgagtacagatagtggtggtgttc |
507 |
Q |
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| T |
1094980 |
ttaacaagtaaatatggggtggatggggttttttatagggtgtaatctagattcatcttggtggaaaaactaatgttgagtacagatagtggtggtgttc |
1095079 |
T |
|
| Q |
508 |
ctggtagttgattttctaaccgcatgccaaaagtagttggaaatggtatatatacattattttggtttgatttgtgggtgatcagagaaatttttatgga |
607 |
Q |
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| T |
1095080 |
ctggtagttggttttctaaccgcatgccaaaagtagttggaaatggtatatatactttattttggtttgatttgtgggtgatcagagaaatttttatgga |
1095179 |
T |
|
| Q |
608 |
taaactcaagcaatctttttagtttatttatcaattaataaacaagcatttgtggaagatatgttgaatgtgagtggaggtttaggc------gaccgga |
701 |
Q |
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| T |
1095180 |
t--actcaagcaatctttttagtttatttatcaattaataaacaagcatttgtggaagatatgttgaatgtgagtggaggtttaggctacatggaccgga |
1095277 |
T |
|
| Q |
702 |
ggttgcataaaaatattttcatttgggagaataat |
736 |
Q |
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| T |
1095278 |
ggttgcataaaaatattttcatttgggaggataat |
1095312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 290 - 736
Target Start/End: Original strand, 1116295 - 1116749
Alignment:
| Q |
290 |
aatttcggttttaattgatgcttgcttgcttaattaggttccaaaggtaaatattgcttttgttggagaagtgatgtaggagaatgaggggtgtgaatgg |
389 |
Q |
| |
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||||| ||||||| ||||||||||| | ||||||| ||| |||||||| ||||||| |||||||||||||||| ||| || ||||||| | ||||||| | |
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| T |
1116295 |
aattttggttttagttgatgcttgccttcttaattgggtcccaaaggtgaatattgattttgttggagaagtggtgttggtgaatgagcgatgtgaatag |
1116394 |
T |
|
| Q |
390 |
agtttatggtttaaatttttatcaagtaaatatggggtgga-tggggttttttatagggtgtaatctagattcatcttgttggaaaaactaatgttgagt |
488 |
Q |
| |
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|||| |||||||||||||| ||||||||||||||| ||| | |||||||||| | | |||||||||||||||||||||| ||| |||||||| ||||||| |
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| T |
1116395 |
agttaatggtttaaattttaatcaagtaaatatggagtgaaatggggtttttcacaaggtgtaatctagattcatcttggtgggaaaactaacgttgagt |
1116494 |
T |
|
| Q |
489 |
acagatagtggtggt---gttcctggtagttgattttctaaccgcatgccaaaagtagttggaaatggtatatatacattattttggtttgatttgtggg |
585 |
Q |
| |
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| T |
1116495 |
aaagatggtggtggtaatgttcctggtatttggttttctaatcgcttgtcaaaagtggttggaaatggtatagatactttattttggtttgatttgtggg |
1116594 |
T |
|
| Q |
586 |
tgatcagagaaatttttatggataaactcaagcaatctttttagtttatttatcaattaataaacaagcatttgtggaagatatgttgaatgtgagtgga |
685 |
Q |
| |
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|| | |||||| |||||||||||||| || ||||||||||||| ||| |||||||||||||||| | |||||| |||||| |||||| |||||||| |
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| T |
1116595 |
tggttggagaaacatttatggataaacttaaccaatctttttagtatatctatcaattaataaacaggtgtttgtgaaagataagttgaa--tgagtgga |
1116692 |
T |
|
| Q |
686 |
ggtttag------gcgaccggaggttgcataaaaatattttcatttgggagaataat |
736 |
Q |
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|||| || ||| ||||| ||||||||||||||||| |||||||| ||||| |
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| T |
1116693 |
ggttcagatgacttggactggaggctgcataaaaatattttcctttgggaggataat |
1116749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 283 - 503
Target Start/End: Original strand, 1097869 - 1098087
Alignment:
| Q |
283 |
agtagagaatttcggttttaattgatgcttgcttgcttaattaggttccaaaggtaaatattgcttttgttggagaagtgatgtaggagaatgaggggtg |
382 |
Q |
| |
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|||||| ||||| || || |||| || ||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||| |||| || | |
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| T |
1097869 |
agtagacaattttggcttaaatttatacttgcttgcttaattgggttccaaaggtaaatattgctttt-ttggagaagtggtgttggaggata-----ta |
1097962 |
T |
|
| Q |
383 |
tgaatggagtttatggtttaaatttttatcaagtaaatatggggtgg---atggggttttttatagggtgtaatctagattcatctt-gttggaaaaact |
478 |
Q |
| |
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||||| ||||||| ||||||||| |||| ||||||||||||||||| |||||||||||| ||||||||||||||| ||||| || ||||||||| |
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| T |
1097963 |
tgaatagagtttacggtttaaatacttatgaagtaaatatggggtggataatggggttttttgcttggtgtaatctagatttatcttggtgggaaaaact |
1098062 |
T |
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| Q |
479 |
aatgttgagtacagatagtggtggt |
503 |
Q |
| |
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||||||||||| |||| |||||||| |
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| T |
1098063 |
aatgttgagtaaagatggtggtggt |
1098087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 131 - 234
Target Start/End: Original strand, 1090976 - 1091076
Alignment:
| Q |
131 |
gatggattgaatgtttggtttttcttcttctttttgtaacgttcgggtaatggagatttaacgagacaattaatagtggtatttgattgtcattatactc |
230 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||| |||||| |||||||||| |||||||||||||||||| |
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| T |
1090976 |
gatggattgaatgtttggtttttcttcttctttctgtaacgttctggcaatggagatttaaggagaca---aatagtggtacttgattgtcattatactc |
1091072 |
T |
|
| Q |
231 |
acaa |
234 |
Q |
| |
|
|||| |
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|
| T |
1091073 |
acaa |
1091076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 642 - 697
Target Start/End: Original strand, 1098162 - 1098216
Alignment:
| Q |
642 |
ttaataaacaagcatttgtggaagatatgttgaatgtgagtggaggtttaggcgac |
697 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
1098162 |
ttaataaacaggcatttgtggaagatatgttgaatgtga-tggaggtttaggcgac |
1098216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 656 - 727
Target Start/End: Original strand, 1121176 - 1121253
Alignment:
| Q |
656 |
tttgtggaagatatgttgaatgtgagtggaggtttaggc------gaccggaggttgcataaaaatattttcatttgg |
727 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||| ||||| |
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|
| T |
1121176 |
tttgtggaagatatgttgaatgtgagtggaggtttaggcgacatggactggaggatgcataaaaatattttcctttgg |
1121253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 637 - 691
Target Start/End: Original strand, 8115592 - 8115646
Alignment:
| Q |
637 |
atcaattaataaacaagcatttgtggaagatatgttgaatgtgagtggaggttta |
691 |
Q |
| |
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||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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|
| T |
8115592 |
atcaattaataaacaggtgtttgtggaagatatgttgaatgtgagtggaggttta |
8115646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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