View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15598_low_32 (Length: 240)
Name: NF15598_low_32
Description: NF15598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15598_low_32 |
 | |
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| [»] scaffold0691 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 2838403 - 2838628
Alignment:
| Q |
1 |
cctcttatgttggaggtattgcctcacttcttcaatcagtgactggtcatcctttttgtgcaacatctgtggaagagggtcttcagttccccgacaaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2838403 |
cctcttatgttggaggtattgcctcacttcttcaatcagtgactggtcatcctttttgtgcaacatctgtggaagagggtcttcagttccccgacaaaat |
2838502 |
T |
|
| Q |
101 |
tgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgacgcaagcataacaatcaaagtttgctgttaccttttggctttcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2838503 |
tgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgacgcaagcataacaatcaaagtttgctgttaccttttggctttcaa |
2838602 |
T |
|
| Q |
201 |
aaactagcttggcaagagtggttttt |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
2838603 |
aaactagcttggcaagagtggttttt |
2838628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 5413221 - 5412996
Alignment:
| Q |
1 |
cctcttatgttggaggtattgcctcacttcttcaatcagtgactggtcatcctttttgtgcaacatctgtggaagagggtcttcagttccccgacaaaat |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||||| |||||||| ||||||| |||||||| ||||||| |||||||||||||||||||||| |
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|
| T |
5413221 |
cctcttatgttgcaggtattgcctcacttctataatcagtgaccggtcatccattttgtgtaacatctgcggaagagagtcttcagttccccgacaaaat |
5413122 |
T |
|
| Q |
101 |
tgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgacgcaagcataacaatcaaagtttgctgttaccttttggctttcaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||| ||||||||||||||||| |
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|
| T |
5413121 |
tgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgttacgcaagcacaacaatcaaagtgtgctgataccttttggctttcaa |
5413022 |
T |
|
| Q |
201 |
aaactagcttggcaagagtggttttt |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
5413021 |
aaactagcttggcaagagtggttttt |
5412996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 2855613 - 2855838
Alignment:
| Q |
1 |
cctcttatgttggaggtattgcctcacttcttcaatcagtgactggtcatcctttttgtgcaacatctgtggaagagggtcttcagttccccgacaaaat |
100 |
Q |
| |
|
|||||||||||| ||||||||||| |||| | ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
2855613 |
cctcttatgttgcaggtattgccttacttgtataatcagtgactggtcatccattttgtgcaacatcagtggaagagggtcttcagttccccgacaaaat |
2855712 |
T |
|
| Q |
101 |
tgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgacgcaagcataacaatcaaagtttgctgttaccttttggctttcaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||| |||| |
|
|
| T |
2855713 |
tgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgatgcaagcacgacaatcaaagtttgttgttaccttttggctgtcaa |
2855812 |
T |
|
| Q |
201 |
aaactagcttggcaagagtggttttt |
226 |
Q |
| |
|
||| ||||||||||||||| |||||| |
|
|
| T |
2855813 |
aaattagcttggcaagagtagttttt |
2855838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 2749330 - 2749105
Alignment:
| Q |
1 |
cctcttatgttggaggtattgcctcacttcttcaatcagtgactggtcatcctttttgtgcaacatctgtggaagagggtcttcagttccccgacaaaat |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||| ||||||||||||||| ||||||| |||||||| |||||| ||||| ||| | |||||| ||| |
|
|
| T |
2749330 |
cctcttatgttgcaggtattgcctcacttctataattagtgactggtcatccattttgtgtaacatctgcagaagagagtctttagtactccgacagaat |
2749231 |
T |
|
| Q |
101 |
tgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgacgcaagcataacaatcaaagtttgctgttaccttttggctttcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||| |||||||| |||||||| |
|
|
| T |
2749230 |
tgctccatcatgtttatcaacaaacctctcacagtgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgatacctttttgctttcaa |
2749131 |
T |
|
| Q |
201 |
aaactagcttggcaagagtggttttt |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
2749130 |
aaactagcttggcaagagtggttttt |
2749105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 2807602 - 2807377
Alignment:
| Q |
1 |
cctcttatgttggaggtattgcctcacttcttcaatcagtgactggtcatcctttttgtgcaacatctgtggaagagggtcttcagttccccgacaaaat |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||||| | ||||||| |||| | ||| | | ||||||||||||||||||| || |||||||| |
|
|
| T |
2807602 |
cctcttatgttgcaggtattgcctcacttctacaatcagtgatttgtcatccaatttgcgtaacttatttggaagagggtcttcagtttcctgacaaaat |
2807503 |
T |
|
| Q |
101 |
tgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgacgcaagcataacaatcaaagtttgctgttaccttttggctttcaa |
200 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||||||||||||| || ||||||| ||||||||||| || ||||||| ||||||| |||| |
|
|
| T |
2807502 |
tgctccatcatgtttatcatcaaccctctcacagtgtatgattgagaaactgcgatgcaagcacgacaatcaaagtgtgttgttaccgtttggctatcaa |
2807403 |
T |
|
| Q |
201 |
aaactagcttggcaagagtggttttt |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
2807402 |
aaactagcttggcaagagtggttttt |
2807377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 2769404 - 2769179
Alignment:
| Q |
1 |
cctcttatgttggaggtattgcctcacttcttcaatcagtgactggtcatcctttttgtgcaacatctgtggaagagggtcttcagttccccgacaaaat |
100 |
Q |
| |
|
|||||||||||| ||||||| ||| || ||| | ||||||| ||||||| ||||||| ||||||| | | ||||| ||||||||| || |||||||| |
|
|
| T |
2769404 |
cctcttatgttgtaggtatttccttacctctattaccagtgacatgtcatccattttgtgtaacatctttagcagaggttcttcagtttcctgacaaaat |
2769305 |
T |
|
| Q |
101 |
tgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgacgcaagcataacaatcaaagtttgctgttaccttttggctttcaa |
200 |
Q |
| |
|
||||||||||| ||||||| || ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||| ||| |
|
|
| T |
2769304 |
tgctccatcatttttatcagtaaccctctcacagtgtatgattgagaaactgtgatgcaagcacgacaatcaaagtttgcagttaccttttggctgtcat |
2769205 |
T |
|
| Q |
201 |
aaactagcttggcaagagtggttttt |
226 |
Q |
| |
|
||||||| |||||||||||||||||| |
|
|
| T |
2769204 |
aaactagtttggcaagagtggttttt |
2769179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 2759549 - 2759325
Alignment:
| Q |
1 |
cctcttatgttggaggtattgcctcacttcttcaatcagtgactggtcatcctttttgtgcaacatctgtggaagagggtcttcagttccccgacaaaat |
100 |
Q |
| |
|
||||||||||| ||||||| ||| || ||| |||||||||| ||||||| ||||||| ||| ||| ||||||||||||||||||| || |||||||| |
|
|
| T |
2759549 |
cctcttatgttctaggtatttccttacctctgtaatcagtgacctgtcatccattttgtgtaacttctttggaagagggtcttcagtttcctgacaaaat |
2759450 |
T |
|
| Q |
101 |
tgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgacgcaagcataacaatcaaagtttgctgttaccttttggctttcaa |
200 |
Q |
| |
|
||| ||||||| ||||||| || ||||||||||||||||||||||||||| || |||||| | ||||||||| | || ||||||||||||||| |||| |
|
|
| T |
2759449 |
tgcgccatcatttttatcagtaatcctctcacagtgtatgattgagaaactacgatgcaagcttgacaatcaaactgtgttgttaccttttggctgtcaa |
2759350 |
T |
|
| Q |
201 |
aaactagcttggcaagagtggtttt |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
2759349 |
aaactagcttggcaagagtggtttt |
2759325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 5 - 226
Target Start/End: Complemental strand, 2797692 - 2797471
Alignment:
| Q |
5 |
ttatgttggaggtattgcctcacttcttcaatcagtgactggtcatcctttttgtgcaacatctgtggaagagggtcttcagttccccgacaaaattgct |
104 |
Q |
| |
|
|||||||| |||||||||||||||| | ||||| ||||| ||||||| ||||||| |||||||| ||||||| ||||||| | | |||||||| || |
|
|
| T |
2797692 |
ttatgttgcaggtattgcctcacttgtataatcaatgacttgtcatccattttgtgtaacatctgcaaaagagggctttcagtttcgctacaaaattcct |
2797593 |
T |
|
| Q |
105 |
ccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgacgcaagcataacaatcaaagtttgctgttaccttttggctttcaaaaac |
204 |
Q |
| |
|
|||||||||| ||||| | || ||||| |||||||||||||||||||||| ||||||| ||||||||| |||| |||||||||||| || || ||||| |
|
|
| T |
2797592 |
ccatcatgttgatcaatatccccctcacggtgtatgattgagaaactgtgatgcaagcacgacaatcaaattttgttgttaccttttgactgtcgaaaac |
2797493 |
T |
|
| Q |
205 |
tagcttggcaagagtggttttt |
226 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
2797492 |
tagcttggcaagagtggttttt |
2797471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 2818892 - 2818667
Alignment:
| Q |
1 |
cctcttatgttggaggtattgcctcacttcttcaatcagtgactggtcatcctttttgtgcaacatctgtggaagagggtcttcagttccccgacaaaat |
100 |
Q |
| |
|
||||||||||| ||||||| ||| || ||| ||||||| || ||||||| ||||| | || |||| | || ||||||||||| | || || ||||| |
|
|
| T |
2818892 |
cctcttatgttctaggtatttccttacctctataatcagtaacctgtcatccattttgcgtaaaatctctagatcagggtcttcagcttcctgataaaat |
2818793 |
T |
|
| Q |
101 |
tgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgacgcaagcataacaatcaaagtttgctgttaccttttggctttcaa |
200 |
Q |
| |
|
||||||||||| ||||||| || ||||||||||||||||||||||||||| || |||||| ||||||||| | || ||||||||||||||| |||| |
|
|
| T |
2818792 |
tgctccatcatttttatcagtaatcctctcacagtgtatgattgagaaactacgatgcaagctcgacaatcaaactgtgttgttaccttttggctgtcaa |
2818693 |
T |
|
| Q |
201 |
aaactagcttggcaagagtggttttt |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
2818692 |
aaactagcttggcaagagtggttttt |
2818667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 163
Target Start/End: Complemental strand, 2790651 - 2790493
Alignment:
| Q |
5 |
ttatgttggaggtattgcctcacttcttcaatcagtgactggtcatcctttttgtgcaacatctgtggaagagggtcttcagttccccgacaaaattgct |
104 |
Q |
| |
|
||||||| |||||||||||||||| | ||| ||||||| ||||||| ||||||| |||||||| ||||||| |||||||| | | |||||||| || |
|
|
| T |
2790651 |
ttatgtttcaggtattgcctcacttgtagaatgagtgacttgtcatccattttgtgtaacatctgcaaaagagggccttcagtttcgctacaaaattcct |
2790552 |
T |
|
| Q |
105 |
ccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgacgcaagca |
163 |
Q |
| |
|
|||||||||| ||||| | || ||||| ||| ||||||||||||| |||| ||||||| |
|
|
| T |
2790551 |
ccatcatgttgatcaatatccccctcacggtgaatgattgagaaacggtgatgcaagca |
2790493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 5955 - 6179
Alignment:
| Q |
1 |
cctcttatgttggaggtattgcctcacttcttcaatcagtgactggtcatcctttttgtgcaacatctgtggaagagggtcttcagttccccgacaaaat |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||| | ||||| ||||||| ||||||| ||||| || |||||||||||||||||| ||||||||||| |
|
|
| T |
5955 |
cctcttatgttgcaggtattgcctcacttctataattaatgacttgtcatccattttgtgtaacatttgcggaagagggtcttcagtttcccgacaaaat |
6054 |
T |
|
| Q |
101 |
tgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgacgcaagcataacaatcaaagtttgctgttaccttttggctttcaa |
200 |
Q |
| |
|
||||||||||||||||| | || |||||||| ||||||| ||||||||||| || ||||||| ||||||||| | || ||||||||||||||| |||| |
|
|
| T |
6055 |
tgctccatcatgtttatgagtaaccctctcacggtgtatgtttgagaaactgcgatgcaagcacgacaatcaaattgtgttgttaccttttggctgtcaa |
6154 |
T |
|
| Q |
201 |
aaactagcttggcaagagtggtttt |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
6155 |
aaactagcttggcaagagtggtttt |
6179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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