View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15598_low_34 (Length: 225)

Name: NF15598_low_34
Description: NF15598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15598_low_34
NF15598_low_34
[»] chr7 (2 HSPs)
chr7 (44-210)||(23158209-23158391)
chr7 (1-46)||(23158136-23158181)
[»] chr8 (2 HSPs)
chr8 (65-113)||(17925453-17925501)
chr8 (74-113)||(42503535-42503574)
[»] chr6 (1 HSPs)
chr6 (67-109)||(34260537-34260579)
[»] chr3 (1 HSPs)
chr3 (74-113)||(29642913-29642952)


Alignment Details
Target: chr7 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 44 - 210
Target Start/End: Original strand, 23158209 - 23158391
Alignment:
Q  44 gttaaaatccactcattttgtaaggagctaaaatggttatttcaaactttgaatggattaaaattaaaaacat------------tgcttattatacacg 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||    
T  23158209 gttaaaatccactcattttgtaaggagctaaaatggttatttcaaactttgaatggattaaaattaaaaacatatctctttaaattgcttattatacacg 23158308  T
Q  132 actac----ataccatattaaatattgtagatactcaaaatttaatgctgagaattattgtcggaggttgtaatgaataaact 210  Q
    |||||    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  23158309 actacgtacataccatattaaatattgtagatactcaaaatttaatgctgagaattcttgtcggaggttgtaatgaataaact 23158391  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 23158136 - 23158181
Alignment:
Q  1 cctaaaatgataatcttacagtttaaaataagtgattgtagttgtt 46  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  23158136 cctaaaatgataatcttacagtttaaaataaatgattgtagttgtt 23158181  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 17925501 - 17925453
Alignment:
Q  65 aaggagctaaaatggttatttcaaactttgaatggattaaaattaaaaa 113  Q
    |||||||| |||||||| ||||||| |||||||||||||||||||||||    
T  17925501 aaggagctgaaatggttgtttcaaattttgaatggattaaaattaaaaa 17925453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 113
Target Start/End: Complemental strand, 42503574 - 42503535
Alignment:
Q  74 aaatggttatttcaaactttgaatggattaaaattaaaaa 113  Q
    |||||||| ||||||| |||||||||||||||||||||||    
T  42503574 aaatggttgtttcaaattttgaatggattaaaattaaaaa 42503535  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 67 - 109
Target Start/End: Original strand, 34260537 - 34260579
Alignment:
Q  67 ggagctaaaatggttatttcaaactttgaatggattaaaatta 109  Q
    |||||| |||||||||||||||| |||||||||||||||||||    
T  34260537 ggagctgaaatggttatttcaaattttgaatggattaaaatta 34260579  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 113
Target Start/End: Complemental strand, 29642952 - 29642913
Alignment:
Q  74 aaatggttatttcaaactttgaatggattaaaattaaaaa 113  Q
    |||||||| ||||||| |||||||||||||||||||||||    
T  29642952 aaatggttgtttcaaattttgaatggattaaaattaaaaa 29642913  T

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