View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15598_low_35 (Length: 222)
Name: NF15598_low_35
Description: NF15598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15598_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 205
Target Start/End: Original strand, 39679436 - 39679625
Alignment:
| Q |
16 |
gaacctgtgcaacaagcaaaacaagaagcatcaagaaggaaaaagatgtcaagagcacaagattcagtactcaaatacatggcaaagatcatggatgtat |
115 |
Q |
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| T |
39679436 |
gaacctgagcaacaagcaaaacaagaagcatcaagaaggaaaaagatgtcaagagcacaagattcagtactcaaatacatggcaaagatcatggatgtat |
39679535 |
T |
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| Q |
116 |
gcaaagccaaaggttttgtctatggaatcatccctgaaaagggtaaaccggtatcaggttcgtctgatagtttacgcgaatggtggaaag |
205 |
Q |
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| T |
39679536 |
gcaaagccaaaggttttgtctatggaatcatccctgaaaagggtaaaccggtatcaggttcgtctgatagtttacgcgaatggtggaaag |
39679625 |
T |
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Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 25 - 205
Target Start/End: Original strand, 38051988 - 38052168
Alignment:
| Q |
25 |
caacaagcaaaacaagaagcatcaagaaggaaaaagatgtcaagagcacaagattcagtactcaaatacatggcaaagatcatggatgtatgcaaagcca |
124 |
Q |
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|||||||||||| | || ||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||| ||| |||||||||| |
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| T |
38051988 |
caacaagcaaaagatgaggcatcaagaaggaaaaagatgtcaagagcacaagattcaattctcaaatacatgatgaagattatgacaatatgcaaagctc |
38052087 |
T |
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| Q |
125 |
aaggttttgtctatggaatcatccctgaaaagggtaaaccggtatcaggttcgtctgatagtttacgcgaatggtggaaag |
205 |
Q |
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| T |
38052088 |
aaggttttgtctatggtattgttccagagaaaggaaaaccagtaacaggttcttcagaaagcttgcgtgaatggtggaaag |
38052168 |
T |
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