View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15598_low_37 (Length: 214)
Name: NF15598_low_37
Description: NF15598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15598_low_37 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 9751674 - 9751875
Alignment:
| Q |
1 |
tgttcacagctcctaagtatagtgtttaagtcaccaaaaaagttccatggaaggttaaattgagtcaacatattacctagtgtttcccacagacgccttc |
100 |
Q |
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| T |
9751674 |
tgttcacagctcctaagtatagtgcttaagtcaccaaaaaagttccatggaaggttaaattgagtcaacatattacctagtgtttcccacagacgccttc |
9751773 |
T |
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| Q |
101 |
tcttcaagtaacaagttgatgcatagactgcaaccattgcaaactccttaccattatcaatcaaagaaaaagaaacatgttggtcatcaataagtattat |
200 |
Q |
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| T |
9751774 |
tcttcaagtaacaagttgatgcatagactgcaaccattgcaaactccttaccattatcaatcaaagaaaaagaaacatgttggtcatcaataagtattat |
9751873 |
T |
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| Q |
201 |
ct |
202 |
Q |
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|| |
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| T |
9751874 |
ct |
9751875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 125
Target Start/End: Original strand, 3566120 - 3566149
Alignment:
| Q |
96 |
ccttctcttcaagtaacaagttgatgcata |
125 |
Q |
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| T |
3566120 |
ccttctcttcaagtaacaagttgatgcata |
3566149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 191
Target Start/End: Original strand, 140198 - 140293
Alignment:
| Q |
96 |
ccttctcttcaagtaacaagttgatgcatagactgcaaccattgcaaactccttaccattatcaatcaaagaaaaagaaacatgttggtcatcaat |
191 |
Q |
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| T |
140198 |
ccttctcttcaagtaacaagttgatgcatatattgctgccaatgctagctccttaccgttatcagagatagagaaggaaacatgttgatcatcaat |
140293 |
T |
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