View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15598_low_38 (Length: 205)
Name: NF15598_low_38
Description: NF15598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15598_low_38 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 169; Significance: 8e-91; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 6838596 - 6838392
Alignment:
| Q |
1 |
cctttagatgttggagaaggcctaatgctaagtgtaccaagtgtaatcaaatttggcatgaagctgttatttgtaaaaataggaaacaacaacataatga |
100 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
6838596 |
cctttagatgttggagaagacctgatgctaagtgtaccaagtgtaatcaaatggggcatgaagctgttatttgtaaaaataggaatcaacaacataatga |
6838497 |
T |
|
| Q |
101 |
tgaggcaaaggttgttgatcaagaggaagagtaagatcacttattcgttgcaacatgtttctctagcattgaatcaagtgagaattgactgattgatagt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
6838496 |
tgaggcaaaggttgttgatcaagaggaagaggaggatcacttattcgttgcaacatgtttctctagcatcgaatcaagtgagaattggctgattgatagt |
6838397 |
T |
|
| Q |
201 |
ggttg |
205 |
Q |
| |
|
||||| |
|
|
| T |
6838396 |
ggttg |
6838392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 8977337 - 8977139
Alignment:
| Q |
1 |
cctttagatgttggagaaggcctaatgctaagtgtaccaagtgtaatcaaatttggcatgaagctgttatttgtaaaaataggaaacaacaacataatga |
100 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||| || ||||||||| ||||||||| ||||||||||||||||||||| |||||| ||| ||| |
|
|
| T |
8977337 |
cctttagatgttggagaagacctgatgctaagtgcac------taatcaaatggggcatgaagttgttatttgtaaaaataggaatcaacaagatattga |
8977244 |
T |
|
| Q |
101 |
tgaggcaaaggttgttgatcaagaggaagagtaagatcacttattcgttgcaacatgtttctctagcattgaatcaagtgagaattgactgattgatagt |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||| ||| |
|
|
| T |
8977243 |
tgaggcaaaggttgttgatcaaaaggaagatgaggatcacttattcgttgcaacatgtttctctagcatcaaatcaaatgagaattggctgattgacagt |
8977144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 3 - 196
Target Start/End: Original strand, 6385123 - 6385315
Alignment:
| Q |
3 |
tttagatgttggagaaggcctaatgctaagtgtaccaagtgtaatcaaatttggcatgaagctgttatttgtaaaaataggaaacaacaacataatgatg |
102 |
Q |
| |
|
|||||| |||||||||| ||| ||| |||| | ||||||||||||||||| ||||||||||| ||| ||| |||||| ||| ||||||| || ||| |
|
|
| T |
6385123 |
tttagaggttggagaagacctgatgttaagcgcaccaagtgtaatcaaatagggcatgaagctattacatgtgaaaataagaatcaacaacgtagtga-c |
6385221 |
T |
|
| Q |
103 |
aggcaaaggttgttgatcaagaggaagagtaagatcacttattcgttgcaacatgtttctctagcattgaatcaagtgagaattgactgattga |
196 |
Q |
| |
|
||| |||| || |||| ||||| |||||| | | | |||| ||| |||| ||||||||||||| ||| |||||||||||||||||| ||||||| |
|
|
| T |
6385222 |
aggaaaagattattgaacaagaagaagagaagggtgacttgttcattgcgacatgtttctctaacatcgaatcaagtgagaattgattgattga |
6385315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 2797401 - 2797341
Alignment:
| Q |
1 |
cctttagatgttggagaaggcctaatgctaagtgtaccaagtgtaatcaaatttggcatga |
61 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2797401 |
cctttagatgttggagaagacctgatgctaagtgtaccaagtgtaatcaaatggggcatga |
2797341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 32525983 - 32526187
Alignment:
| Q |
1 |
cctttagatgttggagaaggcctaatgctaagtgtaccaagtgtaatcaaatttggcatgaagctgttatttgtaaaaataggaaacaacaacataatga |
100 |
Q |
| |
|
|||| |||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
32525983 |
ccttaagatgttggagaagacctgatgctaagtgtaccaagtgtaatcaaatggggcatgaagctgatatttgtaaaaataggaatcaacaacataatga |
32526082 |
T |
|
| Q |
101 |
tgaggcaaaggttgttgatcaagaggaagagtaagatcacttattcgttgcaacatgtttctctagcattgaatcaagtgagaattgactgattgatagt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
32526083 |
tgaggcaaaggttgttgatcaagaggaagaggaggatcacttattcgttgcaacatgtttctctagcatcgaatcaagtgagaattggctgattgatagt |
32526182 |
T |
|
| Q |
201 |
ggttg |
205 |
Q |
| |
|
||||| |
|
|
| T |
32526183 |
ggttg |
32526187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 6e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 20083124 - 20082921
Alignment:
| Q |
1 |
cctttagatgttggagaaggcctaatgctaagtgtaccaagtgtaatcaaatttggcatgaagctgttatttgtaaaaataggaaacaacaacataatga |
100 |
Q |
| |
|
|||||||||||||| || | | ||||||||||||||| |||||||| ||||| || |||||||| |||||||||||||| | || ||||||| || ||| |
|
|
| T |
20083124 |
cctttagatgttggggatgacataatgctaagtgtactaagtgtaaccaaatgaggaatgaagctattatttgtaaaaat-gaaatcaacaacttagtga |
20083026 |
T |
|
| Q |
101 |
tgaggcaaaggttgttgatcaagaggaagagtaagatcacttattcgttgcaacatgtttctctagcattgaatcaagtgagaattgactgattgatagt |
200 |
Q |
| |
|
||| ||||| |||||| || |||| |||||| | ||||||||||| ||||||| ||||||||||||| |||||||||| ||||||| ||||||| | | |
|
|
| T |
20083025 |
tgacgcaaatgttgttaatgaagaagaagaggaggatcacttatttgttgcaagatgtttctctagctttgaatcaagatagaattggttgattgacaat |
20082926 |
T |
|
| Q |
201 |
ggttg |
205 |
Q |
| |
|
||||| |
|
|
| T |
20082925 |
ggttg |
20082921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 41 - 187
Target Start/End: Original strand, 2803085 - 2803229
Alignment:
| Q |
41 |
gtgtaatcaaatttggcatgaagctgttatttgtaa-aaataggaaacaacaacataatgatgaggcaaaggttgttgatcaagaggaagagtaagatca |
139 |
Q |
| |
|
|||||||||||| | | ||||| |||||| ||||| ||| | ||| |||||| ||| ||||| |||||||| ||||| ||||||||| ||| ||| | |
|
|
| T |
2803085 |
gtgtaatcaaatgggacgtgaagttgttatatgtaagaaaaaagaatcaacaaaatagtgatggggcaaaggatgttggtcaagaggaggag---gatta |
2803181 |
T |
|
| Q |
140 |
cttattcgttgcaacatgtttctctagcattgaatcaagtgagaattg |
187 |
Q |
| |
|
||| || ||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2803182 |
cttgtttgttacaacatgtttctctagcatcgaatcaagtgagaattg |
2803229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University