View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15598_low_4 (Length: 715)
Name: NF15598_low_4
Description: NF15598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15598_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 18 - 395
Target Start/End: Original strand, 38188768 - 38189145
Alignment:
| Q |
18 |
aatccaagcttgtaaactaactagaagaatttagttaaaagattttgtgcatgttcacttgtattagtttgacagtgtttacaaacaaggcgagtgcaca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38188768 |
aatccaagcttgtaaactaactagaagaatttagttaaaagactttgtgcatgttcacttgtattagtttgacagtgtttacaaacaaggcgagtgcaca |
38188867 |
T |
|
| Q |
118 |
attttcataaactcaaaagagagttcgacaactattgagacaggcataaacacagtccgagacagatgttaccaaatactaagtctcaatttcttattaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38188868 |
attttcataaactcaaaagagagttcgacaactattgagacaggcataaacacagtccgagacagatgttaccaaatactaagtctcaatttcttattaa |
38188967 |
T |
|
| Q |
218 |
gttgatagacaacaagcgtccatcacattttgaggcacaacacacatgcattttgtaacagtgaaagagataacttacttctcacatgcacctttcctat |
317 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38188968 |
gttgatagacaagaagcgtccatcacattttgaggcacaacacacatgcattttgtaacagtgaaagagataacttacttctcacatgcacctttcctat |
38189067 |
T |
|
| Q |
318 |
acttgctggcctgaaaagttttagtaactctagagctccttgatgaggtactattgggatgagatatccgtctccttt |
395 |
Q |
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| T |
38189068 |
acttgctggcctgaaaagttttagtaactctagagctccttgatgaggtattattgggatgagatatccgtttccttt |
38189145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 390 - 691
Target Start/End: Original strand, 38189302 - 38189603
Alignment:
| Q |
390 |
tcctttccatcttcatcaaactcagcaggggcaagcccggatttacaggcttcctcaagctgaatctgtttttgatgatcctccctggacttgaatgtcg |
489 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
38189302 |
tcctttccatcttcatcaaactcagcaggggcaagcccggatttacaggcttcctcaagctgaatctgtttttgatgatcctccctggacctgaatgtcg |
38189401 |
T |
|
| Q |
490 |
ctgcaatccaccaccataaaaatttaataaacatgcacaaaccgtctaactaaggcataaggcgaattgaaaagtacataatcaaattaaaatttaaatt |
589 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38189402 |
ctgcaatccaccaccataaaaatttaataaacatgcacaaaccgtctaactaaggcataaggcgaattgaaaagtacataatcaaatttaaatttaaatt |
38189501 |
T |
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| Q |
590 |
acaaagaggcaaaagcaactcgctaaacaattatacagagagttttaaatccatgaaaccctaaggggtaaaagcaacttcacattcaccggacactaca |
689 |
Q |
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| T |
38189502 |
acaaagaggcaaaagcaactcgctaaacaattatacagagagttttaaatccatgaaaccctaaggggcaaaagcaacttcacattcaccggacactaca |
38189601 |
T |
|
| Q |
690 |
ag |
691 |
Q |
| |
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|| |
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|
| T |
38189602 |
ag |
38189603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 5e-24; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 390 - 531
Target Start/End: Complemental strand, 38920669 - 38920529
Alignment:
| Q |
390 |
tcctttccatcttcatcaaactcagcaggggcaagcccggatttacaggcttcctcaagctgaatctgtttttgatgatcctccctggacttgaatgtcg |
489 |
Q |
| |
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||||| ||||||||||||| ||||||||| ||||| |||| ||||| ||||||||||||| ||| |||||| |||||||||| ||||| ||||||| | |
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| T |
38920669 |
tccttgccatcttcatcaacctcagcaggtgcaagtccggctttacgagcttcctcaagctcaatttgttttcgatgatcctctctggatttgaatgcca |
38920570 |
T |
|
| Q |
490 |
ctgcaatccaccaccataaaaatttaataaacatgcacaaac |
531 |
Q |
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|||||||||||| ||| ||||||||| |||||||| |||| |
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| T |
38920569 |
ctgcaatccacc-gaatacaaatttaattaacatgcagaaac |
38920529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 277 - 341
Target Start/End: Complemental strand, 38921637 - 38921573
Alignment:
| Q |
277 |
agtgaaagagataacttacttctcacatgcacctttcctatacttgctggcctgaaaagttttag |
341 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
38921637 |
agtgaaagagatcacttacttctcacatgcacctttcctatacttctgggcctgaaaagttttag |
38921573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 38921909 - 38921843
Alignment:
| Q |
18 |
aatccaagcttgtaaactaactagaagaatttagttaaaagattttgtgcatgttcacttgtattag |
84 |
Q |
| |
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|||||| || ||||||||||| | | |||||||||||||||||||||||| ||||| ||||||||| |
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| T |
38921909 |
aatccaggcgtgtaaactaacaacacaaatttagttaaaagattttgtgcaagttcaattgtattag |
38921843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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