View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15598_low_6 (Length: 614)
Name: NF15598_low_6
Description: NF15598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15598_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 532; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 1 - 606
Target Start/End: Complemental strand, 49086171 - 49085562
Alignment:
| Q |
1 |
ccccaaatgattacagtagcagaattcatcaatgtttcgaagcgttatttaaaaaatctttttgaatgataaaatacaatttgagagtatattttatgaa |
100 |
Q |
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| T |
49086171 |
ccccaaatggttacagaagcagaattcatcaatgtttcgaagcgttatttaaaaaatctttttgaatgataaaatacaattttagagcatattttatgaa |
49086072 |
T |
|
| Q |
101 |
tcgtgcttatattctactcnnnnnnnggcacagaaataatgtaagaacggacgaaatcattcctgcaaatgcaattcttccagctaaaagcaggatcttg |
200 |
Q |
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|| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49086071 |
tcttgcttatattctactcaaaaaaaggcacagaaataatgtaagaacggacgaaatcattcctgcaaatgcaattcttccagctaaaagcaggatcttg |
49085972 |
T |
|
| Q |
201 |
gcctcatcgttattagacataagcatactagttaaaccacagccctaacaagtaagatttaca----cgaggtacaataaaaaattcaaatcaatcacta |
296 |
Q |
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|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
49085971 |
gcttcatcgttattagacataagcatgctagttaaaccacagccctaacaagtaagatttaaataaacgaggtacaataaaaaattcaaatcaatcacta |
49085872 |
T |
|
| Q |
297 |
cataataattacaatcctaaatttgtaggagacagtcaatgagtcaatataattaacaaacaagccgacagaaagcactaaaaatgctattaaaaacaat |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49085871 |
cataataattacaatcctaaatttgtaggagacagtcaatgagtcaatgtaattaacaaacaagccgacagaaagcactaaaaatgctattaaaaacaat |
49085772 |
T |
|
| Q |
397 |
ttgatttcactagacctacactacagttaaccattgttgagtcaaattagtgttcaagtcagactgtaaatcaataatgaaggtaacttgaaacaaaaca |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49085771 |
ttgatttcactagacctacactacagttaaccattgttgagtcaaattagtgttcaagtcagactgtaaatcaataatgaaggtaacttgaaacaaaaca |
49085672 |
T |
|
| Q |
497 |
atctcagtagcctctggtttcagctactggaacttcaccctgtacttggcgaacaaactgccctttcacccgggggcggttctctgcctgtctttttcgg |
596 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49085671 |
atctcagtagcctctggtttcagctaccggaacttcaccctgtacttggcgaacaaactgccctttcacccgggggcggttctctgcctgtctttttcgg |
49085572 |
T |
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| Q |
597 |
ctttcatatc |
606 |
Q |
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|||||||||| |
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| T |
49085571 |
ctttcatatc |
49085562 |
T |
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