View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15598_low_9 (Length: 525)
Name: NF15598_low_9
Description: NF15598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15598_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 12 - 507
Target Start/End: Complemental strand, 37259782 - 37259284
Alignment:
| Q |
12 |
tattctggaatgcaattgaaattttatattgtcgtcaaaccctttattaacaca-----cacaaggcctttcatattttatttacgtgggacggctcata |
106 |
Q |
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| T |
37259782 |
tattctggaatgcaattgaaattttatattgtcgtcaaaccctttattaacacaacacacacaaggcctttcatattttatttacgtgggacggctcata |
37259683 |
T |
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| Q |
107 |
tatcttattattattatttttacgatatgatttctttctttaatttgaatgcaccaaaaaaggtataatccataatagtaattgattccactaattaatc |
206 |
Q |
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| T |
37259682 |
t--cttattattattatttttacgatatgatttctttctttaatttgaatgcaccaaaagaggtataatccataatagtaattgattccactaattaatc |
37259585 |
T |
|
| Q |
207 |
caatttgacttgttctctacttctccttattaccaattcctacaatcatggatggctatatatattgtcaagcatatttgtctaaagatcggacccattt |
306 |
Q |
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| T |
37259584 |
caattttacttgttctctacttctccttattactaattcctacaatcatggatggctatatatattgtcaagcatatttgtctaaagatcggacccattt |
37259485 |
T |
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| Q |
307 |
aatactttatcatattctttaattttgttttgcctcctacccactttgtaatcaacgccaatccatataacatatgttatatgccattaaagggatgctt |
406 |
Q |
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| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
37259484 |
agtactttatcatattctttaattttcttttgcctcctacccactttgtaatcaacgccaatccatataacatatattatatgccattaaagggatgctt |
37259385 |
T |
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| Q |
407 |
aaagttactaacaagtaacaaaaacagaatgaaacaatgccacctttgattcacatttacactgcatgcgcactacacaccacgcgttcctccatcttat |
506 |
Q |
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| T |
37259384 |
aaagttactaacaagtaacaaaaacagaatgaaacaatgccacctttgattcacatttacactgcatgcgcactacacaccacgcgttcctccatcttat |
37259285 |
T |
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