View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15599_high_1_N (Length: 373)
Name: NF15599_high_1_N
Description: NF15599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15599_high_1_N |
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| [»] scaffold0025 (1 HSPs) |
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Alignment Details
Target: scaffold0025 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 62 - 373
Target Start/End: Complemental strand, 24343 - 24026
Alignment:
| Q |
62 |
aatgcaattgagaaaatgacaaaattgaatgcagtcacacgtcggacattgacacaaacaccgacacattgacactggtaacctgggaagatgacaaaat |
161 |
Q |
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| T |
24343 |
aatgcaattgagaaaatgacaaaattgaatgtagtcaaacgtcggacattgacacaaacaccaacacattgacactgataacctgggaagatgacaaaat |
24244 |
T |
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| Q |
162 |
tgaatgcaatcacatgcgcaaatatcttgataccgacacgccttctattagaagtaatgtaataacatgcgtcaatatctg------cacactgacacgc |
255 |
Q |
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| T |
24243 |
tgaatgcaatcacatgcgtaaatatcttgataccgacatgccttctattagaagtaatgtaataacatgcgtcaatatctgaacactaacactgacacgc |
24144 |
T |
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| Q |
256 |
ggacacacattcgattagaagtgttagtgctacacacatttaacaaccaaaaactaaaattatttttcttctcaatattcaacattaacctatgaagcac |
355 |
Q |
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| T |
24143 |
ggacacacattccatcagaagtgttagtgctacacacatttaacaaccaaaaactaaaattatttttcttctcgatattcaacattaacctatgaagcac |
24044 |
T |
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| Q |
356 |
atacacgacggtaataat |
373 |
Q |
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| T |
24043 |
atacacgacggtaataat |
24026 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 18622410 - 18622457
Alignment:
| Q |
22 |
acaccgacttcggtaataattttagaaaatgacaaaattaaatgcaat |
69 |
Q |
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| T |
18622410 |
acaccgacatcgataataatttaagaaaatgacataattaaatgcaat |
18622457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 31667431 - 31667463
Alignment:
| Q |
33 |
ggtaataattttagaaaatgacaaaattaaatg |
65 |
Q |
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| T |
31667431 |
ggtaataattttagaaaatgacataattaaatg |
31667463 |
T |
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